Wall clock time and date at job start Mon Mar 30 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.47118 * 2 1 4 4 C 1.46897 * 110.99908 * 69.28424 * 3 2 1 5 5 C 1.50710 * 109.46851 * 68.88339 * 4 3 2 6 6 H 1.08000 * 119.99612 * 355.41260 * 5 4 3 7 7 C 1.37877 * 120.00089 * 175.40806 * 5 4 3 8 8 N 1.31522 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47315 * 90.00308 * 9 7 5 11 11 H 1.48505 * 109.47244 * 210.00353 * 9 7 5 12 12 H 1.48493 * 109.47369 * 330.00418 * 9 7 5 13 13 C 1.46902 * 110.99772 * 305.33511 * 3 2 1 14 14 H 1.09004 * 109.48281 * 64.90712 * 13 3 2 15 15 C 1.52957 * 109.48223 * 304.88358 * 13 3 2 16 16 C 1.52991 * 109.80167 * 176.42594 * 15 13 3 17 17 C 1.53232 * 109.41199 * 63.58309 * 16 15 13 18 18 C 1.51271 * 108.53680 * 305.37242 * 17 16 15 19 19 O 1.20757 * 120.84437 * 231.36974 * 18 17 16 20 20 C 1.51265 * 118.30071 * 51.35307 * 18 17 16 21 21 H 1.09002 * 109.46872 * 185.93982 * 1 2 3 22 22 H 1.08998 * 109.46841 * 305.93572 * 1 2 3 23 23 H 1.09001 * 109.47182 * 65.94011 * 1 2 3 24 24 H 1.08997 * 109.47168 * 239.99648 * 2 1 3 25 25 H 1.09001 * 109.46935 * 119.99631 * 2 1 3 26 26 H 1.08997 * 109.47176 * 188.87507 * 4 3 2 27 27 H 1.08994 * 109.47699 * 308.88361 * 4 3 2 28 28 H 0.96996 * 119.99563 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.41041 * 296.51197 * 15 13 3 30 30 H 1.08994 * 109.41891 * 56.29969 * 15 13 3 31 31 H 1.09001 * 109.47776 * 303.60199 * 16 15 13 32 32 H 1.08994 * 109.47287 * 183.56316 * 16 15 13 33 33 H 1.09002 * 109.62294 * 185.65683 * 17 16 15 34 34 H 1.09002 * 109.62728 * 65.09129 * 17 16 15 35 35 H 1.08996 * 109.62457 * 188.94072 * 20 18 17 36 36 H 1.08991 * 109.78700 * 68.45619 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7378 2.0430 1.2827 5 6 2.5898 1.4258 2.3618 6 1 3.2174 0.5767 2.1347 7 6 2.5682 1.9452 3.6388 8 7 1.8037 2.9790 3.9154 9 14 3.6237 1.1797 4.9764 10 1 4.9532 1.8411 4.9972 11 1 2.9611 1.3590 6.2933 12 1 3.7962 -0.2695 4.7023 13 6 1.4473 2.1457 -1.1188 14 1 0.3691 2.2335 -0.9849 15 6 1.7406 1.4193 -2.4326 16 6 1.0720 2.1579 -3.5936 17 6 1.6835 3.5566 -3.7271 18 6 1.5700 4.2603 -2.3928 19 8 1.0899 5.3656 -2.3147 20 6 2.0729 3.5439 -1.1591 21 1 -0.3633 -1.0222 0.1063 22 1 -0.3633 0.6031 0.8321 23 1 -0.3633 0.4190 -0.9384 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.9656 3.1060 1.2036 27 1 0.6849 1.9147 1.5334 28 1 1.7883 3.3442 4.8138 29 1 2.8178 1.3871 -2.5961 30 1 1.3529 0.4021 -2.3785 31 1 0.0027 2.2454 -3.4011 32 1 1.2310 1.6020 -4.5176 33 1 1.1426 4.1216 -4.4862 34 1 2.7332 3.4719 -4.0083 35 1 1.7822 4.1008 -0.2684 36 1 3.1587 3.4582 -1.1992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086600835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:23 Heat of formation + Delta-G solvation = -47.370899 kcal Electronic energy + Delta-G solvation = -16248.095687 eV Core-core repulsion = 13731.783802 eV Total energy + Delta-G solvation = -2516.311884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81973 -37.79266 -34.91259 -32.57076 -30.91321 -28.96382 -28.34206 -26.06531 -23.32867 -22.71614 -21.29147 -19.32434 -18.68393 -16.42027 -15.82649 -15.48444 -14.87716 -14.64274 -14.42700 -14.10133 -13.73981 -13.47495 -12.84458 -12.66054 -12.19581 -11.89343 -11.87491 -11.39427 -11.29737 -11.15236 -10.92825 -10.77043 -10.63818 -10.53557 -10.19401 -10.03960 -9.64759 -9.21743 -9.12660 -8.41217 -7.23630 -6.01909 -4.02854 2.16421 3.32238 3.38460 3.41347 4.27018 4.42954 4.71155 4.93833 4.97396 5.10494 5.32230 5.37707 5.50845 5.58653 5.69331 5.71868 5.80209 5.88789 5.94487 5.97339 6.12178 6.16497 6.26449 6.33917 6.51850 6.57901 6.63991 6.84930 7.29225 7.39946 7.70906 7.80165 8.09923 8.20574 8.54009 9.04122 9.60811 11.08798 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.007647 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.166661 B = 3660.910656 C = 4163.746321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.529 5.529 4 C 0.184 3.816 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.091 3.909 14 H 0.037 0.963 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.170 4.170 18 C 0.364 3.636 19 O -0.466 6.466 20 C -0.163 4.163 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.037 0.963 27 H -0.006 1.006 28 H 0.261 0.739 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -3.689 -13.238 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.253 5.253 4 C 0.059 3.941 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.018 4.018 14 H 0.055 0.945 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.207 4.207 18 C 0.240 3.760 19 O -0.340 6.340 20 C -0.201 4.201 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.447 -2.994 -13.091 13.437 hybrid contribution -0.331 -0.346 0.997 1.106 sum -0.778 -3.340 -12.094 12.571 Atomic orbital electron populations 1.22424 0.99546 1.01323 1.01547 1.22046 0.91875 0.91483 1.01723 1.62420 1.57263 1.01438 1.04136 1.19869 0.95116 0.95143 0.83963 1.21143 1.24909 1.15093 0.93216 0.91941 1.24984 0.95834 0.95139 0.98692 1.69960 1.39275 1.23714 1.20828 0.86519 0.80379 0.79568 0.81046 1.20682 1.21394 1.19912 1.21430 0.96342 0.91731 0.92281 0.94511 1.21747 1.01678 0.99335 0.93156 1.21495 1.00126 0.93969 0.99323 1.22328 1.03598 0.97961 0.96850 1.25019 0.72732 0.85659 0.92605 1.90379 1.34295 1.20343 1.88989 1.22419 1.03340 0.97135 0.97186 0.93283 0.91815 0.93574 0.92449 0.89944 0.94494 0.98861 0.92942 0.90743 0.90983 0.91835 0.90934 0.89939 0.88447 0.88655 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 8.98 37.16 0.33 -2.82 16 2 C 0.06 1.03 5.37 -3.82 -0.02 1.01 16 3 N -0.53 -10.63 4.55 -227.96 -1.04 -11.67 16 4 C 0.18 4.61 4.47 -4.97 -0.02 4.58 16 5 C -0.50 -13.84 8.50 -34.44 -0.29 -14.13 16 6 H 0.06 1.69 7.20 -52.49 -0.38 1.31 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.09 1.53 1.34 -67.61 -0.09 1.44 16 14 H 0.04 0.66 6.66 -51.93 -0.35 0.31 16 15 C -0.12 -1.55 4.64 -26.76 -0.12 -1.68 16 16 C -0.11 -1.18 5.94 -26.62 -0.16 -1.34 16 17 C -0.17 -1.91 6.17 -27.48 -0.17 -2.08 16 18 C 0.36 5.64 6.72 -28.48 -0.19 5.45 16 19 O -0.47 -8.81 17.89 6.00 0.11 -8.70 16 20 C -0.16 -2.77 5.11 -27.49 -0.14 -2.91 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.24 6.30 -51.93 -0.33 0.91 16 23 H 0.05 0.69 6.26 -51.93 -0.33 0.37 16 24 H 0.06 0.88 6.47 -51.93 -0.34 0.55 16 25 H 0.08 1.65 6.78 -51.93 -0.35 1.30 16 26 H 0.04 1.00 5.88 -51.93 -0.31 0.69 16 27 H -0.01 -0.17 6.19 -51.93 -0.32 -0.49 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.89 5.76 -51.93 -0.30 0.59 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.90 6.48 -51.93 -0.34 1.57 16 36 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -30.30 278.56 -7.41 -37.71 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.42 Total: -1.16 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.97 Total: -11.04 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.30 Total: -37.49 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.11 Total: -8.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.30 -7.41 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086600835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.657 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds