Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.47118 * 2 1 4 4 C 1.46897 * 110.99908 * 69.28424 * 3 2 1 5 5 C 1.50710 * 109.46851 * 68.88339 * 4 3 2 6 6 H 1.08000 * 119.99612 * 355.41260 * 5 4 3 7 7 C 1.37877 * 120.00089 * 175.40806 * 5 4 3 8 8 N 1.31522 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47315 * 90.00308 * 9 7 5 11 11 H 1.48505 * 109.47244 * 210.00353 * 9 7 5 12 12 H 1.48493 * 109.47369 * 330.00418 * 9 7 5 13 13 C 1.46902 * 110.99772 * 305.33511 * 3 2 1 14 14 H 1.09004 * 109.48281 * 64.90712 * 13 3 2 15 15 C 1.52957 * 109.48223 * 304.88358 * 13 3 2 16 16 C 1.52991 * 109.80167 * 176.42594 * 15 13 3 17 17 C 1.53232 * 109.41199 * 63.58309 * 16 15 13 18 18 C 1.51271 * 108.53680 * 305.37242 * 17 16 15 19 19 O 1.20757 * 120.84437 * 231.36974 * 18 17 16 20 20 C 1.51265 * 118.30071 * 51.35307 * 18 17 16 21 21 H 1.09002 * 109.46872 * 185.93982 * 1 2 3 22 22 H 1.08998 * 109.46841 * 305.93572 * 1 2 3 23 23 H 1.09001 * 109.47182 * 65.94011 * 1 2 3 24 24 H 1.08997 * 109.47168 * 239.99648 * 2 1 3 25 25 H 1.09001 * 109.46935 * 119.99631 * 2 1 3 26 26 H 1.08997 * 109.47176 * 188.87507 * 4 3 2 27 27 H 1.08994 * 109.47699 * 308.88361 * 4 3 2 28 28 H 0.96996 * 119.99563 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.41041 * 296.51197 * 15 13 3 30 30 H 1.08994 * 109.41891 * 56.29969 * 15 13 3 31 31 H 1.09001 * 109.47776 * 303.60199 * 16 15 13 32 32 H 1.08994 * 109.47287 * 183.56316 * 16 15 13 33 33 H 1.09002 * 109.62294 * 185.65683 * 17 16 15 34 34 H 1.09002 * 109.62728 * 65.09129 * 17 16 15 35 35 H 1.08996 * 109.62457 * 188.94072 * 20 18 17 36 36 H 1.08991 * 109.78700 * 68.45619 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7378 2.0430 1.2827 5 6 2.5898 1.4258 2.3618 6 1 3.2174 0.5767 2.1347 7 6 2.5682 1.9452 3.6388 8 7 1.8037 2.9790 3.9154 9 14 3.6237 1.1797 4.9764 10 1 4.9532 1.8411 4.9972 11 1 2.9611 1.3590 6.2933 12 1 3.7962 -0.2695 4.7023 13 6 1.4473 2.1457 -1.1188 14 1 0.3691 2.2335 -0.9849 15 6 1.7406 1.4193 -2.4326 16 6 1.0720 2.1579 -3.5936 17 6 1.6835 3.5566 -3.7271 18 6 1.5700 4.2603 -2.3928 19 8 1.0899 5.3656 -2.3147 20 6 2.0729 3.5439 -1.1591 21 1 -0.3633 -1.0222 0.1063 22 1 -0.3633 0.6031 0.8321 23 1 -0.3633 0.4190 -0.9384 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.9656 3.1060 1.2036 27 1 0.6849 1.9147 1.5334 28 1 1.7883 3.3442 4.8138 29 1 2.8178 1.3871 -2.5961 30 1 1.3529 0.4021 -2.3785 31 1 0.0027 2.2454 -3.4011 32 1 1.2310 1.6020 -4.5176 33 1 1.1426 4.1216 -4.4862 34 1 2.7332 3.4719 -4.0083 35 1 1.7822 4.1008 -0.2684 36 1 3.1587 3.4582 -1.1992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086600835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = -67.691409 kcal Electronic energy + Delta-G solvation = -16248.976850 eV Core-core repulsion = 13731.783802 eV Total energy + Delta-G solvation = -2517.193048 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12793 -39.27346 -36.22425 -34.61993 -32.22675 -30.59141 -29.60574 -27.83609 -25.03152 -24.04494 -22.64594 -20.71696 -19.98081 -18.42328 -17.32448 -16.85265 -16.62149 -15.97940 -15.66647 -15.63020 -15.22669 -14.89237 -14.37228 -13.90309 -13.71378 -13.53603 -13.09429 -13.03356 -12.78947 -12.64126 -12.62966 -12.34262 -12.11273 -11.78376 -11.71423 -11.48556 -11.22599 -11.12388 -10.57897 -10.43485 -8.92393 -8.18333 -6.27640 0.90949 1.40805 1.42216 1.53041 2.40691 3.04045 3.14031 3.39902 3.76071 3.94300 4.06244 4.15622 4.30005 4.33597 4.43860 4.49663 4.60510 4.67381 4.76921 4.86838 4.97957 5.02936 5.07987 5.08965 5.20200 5.26073 5.29215 5.41044 5.44686 5.55925 5.69659 6.10047 6.42239 6.47168 6.69218 6.89546 7.41516 8.92480 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.007647 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.166661 B = 3660.910656 C = 4163.746321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 N -0.533 5.533 4 C 0.200 3.800 5 C -0.516 4.516 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.091 3.909 14 H 0.021 0.979 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.157 4.157 18 C 0.369 3.631 19 O -0.509 6.509 20 C -0.166 4.166 21 H 0.073 0.927 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.007 0.993 27 H -0.037 1.037 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.048 0.952 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -5.771 -15.592 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.072 4.072 3 N -0.257 5.257 4 C 0.073 3.927 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.793 3.207 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.185 1.185 13 C -0.018 4.018 14 H 0.039 0.961 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.195 4.195 18 C 0.248 3.752 19 O -0.386 6.386 20 C -0.204 4.204 21 H 0.092 0.908 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.025 0.975 27 H -0.019 1.019 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.504 -5.107 -15.471 16.300 hybrid contribution -0.642 0.308 1.714 1.856 sum -0.138 -4.799 -13.758 14.571 Atomic orbital electron populations 1.22327 0.98588 1.02184 1.00865 1.22128 0.92705 0.89998 1.02400 1.62334 1.57990 1.02582 1.02746 1.19465 0.92874 0.93839 0.86476 1.21506 1.24832 1.15032 0.94104 0.91671 1.25927 0.97148 0.95564 1.01348 1.70110 1.41083 1.25334 1.21396 0.85403 0.78455 0.79190 0.77689 1.20013 1.21160 1.18541 1.21566 0.95091 0.91676 0.93423 0.96133 1.21733 1.02867 0.99511 0.90983 1.21517 0.99439 0.93323 0.99883 1.22344 1.05821 0.97818 0.93489 1.25440 0.70970 0.84885 0.93949 1.90370 1.36310 1.22231 1.89644 1.22405 1.03848 0.97358 0.96767 0.90821 0.95799 0.91669 0.88467 0.92427 0.97515 1.01925 0.92937 0.89547 0.89711 0.92283 0.86907 0.88410 0.85520 0.93339 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 8.98 71.98 0.65 -5.23 16 2 C 0.06 1.93 5.37 86.30 0.46 2.39 16 3 N -0.53 -21.64 4.55 -875.13 -3.98 -25.62 16 4 C 0.20 10.57 4.47 85.56 0.38 10.95 16 5 C -0.52 -29.15 8.50 25.60 0.22 -28.94 16 6 H 0.07 3.56 7.20 -2.91 -0.02 3.54 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 13 C 0.09 3.04 1.34 44.98 0.06 3.10 16 14 H 0.02 0.75 6.66 -2.38 -0.02 0.74 16 15 C -0.11 -2.48 4.64 30.58 0.14 -2.34 16 16 C -0.10 -1.72 5.94 30.67 0.18 -1.54 16 17 C -0.16 -2.96 6.17 30.11 0.19 -2.78 16 18 C 0.37 11.28 6.72 29.46 0.20 11.48 16 19 O -0.51 -19.67 17.89 -1.44 -0.03 -19.70 16 20 C -0.17 -5.82 5.11 30.11 0.15 -5.67 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.02 0.95 6.30 -2.39 -0.02 0.93 16 23 H 0.06 1.85 6.26 -2.39 -0.01 1.83 16 24 H 0.10 2.64 6.47 -2.39 -0.02 2.63 16 25 H 0.06 2.29 6.78 -2.39 -0.02 2.27 16 26 H 0.01 0.40 5.88 -2.39 -0.01 0.38 16 27 H -0.04 -2.13 6.19 -2.39 -0.01 -2.15 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.08 1.69 5.76 -2.39 -0.01 1.67 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 2.13 6.48 -2.39 -0.02 2.11 16 36 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 Total: -1.00 -70.04 278.56 2.46 -67.59 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.06 Total: 6.76 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.09 Total: -18.26 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.70 Total: -83.11 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.03 Total: -19.70 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.04 2.46 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086600835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.104 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds