Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47205 * 2 1 4 4 C 1.46903 * 110.99856 * 296.64091 * 3 2 1 5 5 C 1.50696 * 109.47086 * 296.56867 * 4 3 2 6 6 H 1.08005 * 119.99995 * 354.58681 * 5 4 3 7 7 C 1.37873 * 119.99781 * 174.58742 * 5 4 3 8 8 N 1.31515 * 120.00526 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99905 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47192 * 270.00087 * 9 7 5 11 11 H 1.48494 * 109.47306 * 149.99927 * 9 7 5 12 12 H 1.48497 * 109.46955 * 30.00209 * 9 7 5 13 13 C 1.46897 * 110.99897 * 60.59316 * 3 2 1 14 14 H 1.08995 * 109.48401 * 297.89849 * 13 3 2 15 15 C 1.52957 * 109.48504 * 57.94342 * 13 3 2 16 16 C 1.52957 * 109.82298 * 183.57908 * 15 13 3 17 17 C 1.53233 * 109.39956 * 296.40075 * 16 15 13 18 18 C 1.51266 * 108.53891 * 54.62633 * 17 16 15 19 19 O 1.20762 * 120.84864 * 128.67803 * 18 17 16 20 20 C 1.51270 * 118.29815 * 308.65139 * 18 17 16 21 21 H 1.09005 * 109.46943 * 63.00569 * 1 2 3 22 22 H 1.09010 * 109.47251 * 182.99787 * 1 2 3 23 23 H 1.08997 * 109.47529 * 303.00118 * 1 2 3 24 24 H 1.09000 * 109.46928 * 239.99603 * 2 1 3 25 25 H 1.09003 * 109.46677 * 119.99879 * 2 1 3 26 26 H 1.08996 * 109.46741 * 176.56694 * 4 3 2 27 27 H 1.08997 * 109.47168 * 56.57011 * 4 3 2 28 28 H 0.96998 * 119.99310 * 359.97438 * 8 7 5 29 29 H 1.09003 * 109.41354 * 303.68457 * 15 13 3 30 30 H 1.08997 * 109.41728 * 63.46663 * 15 13 3 31 31 H 1.08998 * 109.48461 * 176.42236 * 16 15 13 32 32 H 1.09001 * 109.48178 * 56.37457 * 16 15 13 33 33 H 1.08998 * 109.62405 * 294.90685 * 17 16 15 34 34 H 1.08998 * 109.78133 * 174.43323 * 17 16 15 35 35 H 1.09001 * 109.62647 * 291.63379 * 20 18 17 36 36 H 1.09000 * 109.62517 * 171.06682 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6153 2.0862 -1.2259 5 6 2.2539 1.4221 -2.4184 6 1 2.9639 0.6210 -2.2745 7 6 1.9319 1.8372 -3.6931 8 7 1.0678 2.8130 -3.8684 9 14 2.7240 1.0144 -5.1714 10 1 3.9774 1.7290 -5.5230 11 1 1.7884 1.0598 -6.3236 12 1 3.0360 -0.3997 -4.8426 13 6 1.5603 2.1057 1.1947 14 1 0.4713 2.1528 1.1946 15 6 2.0393 1.3724 2.4486 16 6 1.4907 2.0661 3.6966 17 6 2.0611 3.4857 3.7820 18 6 1.7588 4.2043 2.4857 19 8 1.2324 5.2912 2.4883 20 6 2.1332 3.5268 1.1861 21 1 -0.3633 0.4665 -0.9158 22 1 -0.3634 -1.0263 0.0537 23 1 -0.3634 0.5597 0.8618 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.9381 3.1259 -1.1728 27 1 0.5307 2.0472 -1.3258 28 1 0.6568 3.2404 -3.1008 29 1 1.6863 0.3414 2.4226 30 1 3.1288 1.3804 2.4791 31 1 1.7824 1.5032 4.5833 32 1 0.4034 2.1141 3.6375 33 1 3.1397 3.4385 3.9316 34 1 1.5994 4.0194 4.6127 35 1 3.2186 3.4834 1.0952 36 1 1.7151 4.0851 0.3485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086600837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = -50.367299 kcal Electronic energy + Delta-G solvation = -16294.040221 eV Core-core repulsion = 13777.598403 eV Total energy + Delta-G solvation = -2516.441818 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90988 -37.88743 -35.07398 -32.77668 -30.99276 -28.80136 -28.44451 -25.72818 -23.42821 -22.71353 -21.46045 -19.47301 -18.83759 -16.63319 -16.16210 -15.60056 -14.85864 -14.55103 -14.43395 -13.91344 -13.78561 -13.67315 -12.96199 -12.74829 -12.36605 -11.96534 -11.76824 -11.49261 -11.44172 -11.17305 -10.91016 -10.76152 -10.67366 -10.64392 -10.11376 -10.09931 -9.80935 -9.28070 -8.65135 -8.36153 -7.33427 -6.36331 -4.05383 2.07296 3.44029 3.47004 3.62772 4.18385 4.49486 4.63549 4.85018 4.90295 5.01640 5.25840 5.36901 5.42331 5.50570 5.60157 5.67195 5.73753 5.85288 5.88368 5.90485 6.04579 6.07988 6.17857 6.29951 6.40257 6.47922 6.60334 6.81366 7.07732 7.15460 7.61334 7.78636 7.95799 8.32299 8.58125 8.87152 9.65156 11.02578 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.007556 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.381153 B = 3704.555848 C = 4159.152129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.060 3.940 3 N -0.523 5.523 4 C 0.174 3.826 5 C -0.587 4.587 6 H 0.057 0.943 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 1.073 2.927 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.289 1.289 13 C 0.088 3.912 14 H 0.037 0.963 15 C -0.120 4.120 16 C -0.111 4.111 17 C -0.169 4.169 18 C 0.364 3.636 19 O -0.466 6.466 20 C -0.163 4.163 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.022 0.978 27 H -0.011 1.011 28 H 0.267 0.733 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -3.909 13.530 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.247 5.247 4 C 0.049 3.951 5 C -0.626 4.626 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.902 3.098 10 H -0.215 1.215 11 H -0.212 1.212 12 H -0.215 1.215 13 C -0.021 4.021 14 H 0.055 0.945 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.207 4.207 18 C 0.240 3.760 19 O -0.339 6.339 20 C -0.201 4.201 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.006 0.994 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.938 -3.335 11.870 12.481 hybrid contribution -0.933 0.005 1.614 1.864 sum 1.006 -3.330 13.484 13.926 Atomic orbital electron populations 1.22381 0.99471 1.00924 1.01910 1.22030 0.92033 0.91062 1.01735 1.62329 1.58775 1.01801 1.01791 1.19952 0.93971 0.94364 0.86824 1.21968 1.27706 1.21520 0.91387 0.92467 1.25822 0.96151 0.96279 1.00744 1.70768 1.27068 1.22754 1.34518 0.83475 0.75834 0.75275 0.75222 1.21469 1.21154 1.21487 1.21482 0.96760 0.91737 0.92129 0.94487 1.21716 1.01875 0.99528 0.92664 1.21488 1.00659 0.93848 0.98900 1.22321 1.03534 0.97742 0.97114 1.25008 0.72871 0.85089 0.93051 1.90384 1.32517 1.20853 1.90177 1.22422 1.04189 0.97198 0.96255 0.91714 0.93261 0.93704 0.89697 0.92454 0.95994 0.99385 0.92285 0.90961 0.90690 0.90797 0.91815 0.88401 0.89826 0.87576 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.23 37.16 0.34 -2.95 16 2 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 3 N -0.52 -10.60 4.59 -227.98 -1.05 -11.64 16 4 C 0.17 4.34 3.60 -4.98 -0.02 4.32 16 5 C -0.59 -16.21 8.33 -34.44 -0.29 -16.49 16 6 H 0.06 1.58 7.16 -52.48 -0.38 1.21 16 7 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 8 N -0.91 -27.73 13.65 55.43 0.76 -26.98 16 9 Si 1.07 25.18 29.90 -169.99 -5.08 20.09 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.09 1.47 1.52 -67.62 -0.10 1.37 16 14 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 15 C -0.12 -1.54 4.91 -26.78 -0.13 -1.67 16 16 C -0.11 -1.16 5.94 -26.63 -0.16 -1.32 16 17 C -0.17 -1.88 6.17 -27.49 -0.17 -2.05 16 18 C 0.36 5.55 6.72 -28.48 -0.19 5.36 16 19 O -0.47 -8.66 17.89 6.00 0.11 -8.56 16 20 C -0.16 -2.72 4.99 -27.48 -0.14 -2.86 16 21 H 0.06 1.34 6.56 -51.93 -0.34 1.00 16 22 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.04 0.73 6.31 -51.93 -0.33 0.40 16 24 H 0.08 1.75 6.70 -51.93 -0.35 1.41 16 25 H 0.06 0.90 6.15 -51.93 -0.32 0.58 16 26 H 0.02 0.58 6.01 -51.93 -0.31 0.27 16 27 H -0.01 -0.30 5.94 -51.93 -0.31 -0.61 16 28 H 0.27 8.10 7.18 -40.82 -0.29 7.81 16 29 H 0.07 0.90 6.15 -51.93 -0.32 0.58 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.09 1.78 6.55 -51.93 -0.34 1.44 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -30.96 277.73 -7.42 -38.38 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.37 Total: -0.57 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.97 Total: -14.92 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.29 Total: -38.62 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.11 Total: -8.56 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.96 -7.42 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086600837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.988 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds