Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47205 * 2 1 4 4 C 1.46903 * 110.99856 * 296.64091 * 3 2 1 5 5 C 1.50696 * 109.47086 * 296.56867 * 4 3 2 6 6 H 1.08005 * 119.99995 * 354.58681 * 5 4 3 7 7 C 1.37873 * 119.99781 * 174.58742 * 5 4 3 8 8 N 1.31515 * 120.00526 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99905 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47192 * 270.00087 * 9 7 5 11 11 H 1.48494 * 109.47306 * 149.99927 * 9 7 5 12 12 H 1.48497 * 109.46955 * 30.00209 * 9 7 5 13 13 C 1.46897 * 110.99897 * 60.59316 * 3 2 1 14 14 H 1.08995 * 109.48401 * 297.89849 * 13 3 2 15 15 C 1.52957 * 109.48504 * 57.94342 * 13 3 2 16 16 C 1.52957 * 109.82298 * 183.57908 * 15 13 3 17 17 C 1.53233 * 109.39956 * 296.40075 * 16 15 13 18 18 C 1.51266 * 108.53891 * 54.62633 * 17 16 15 19 19 O 1.20762 * 120.84864 * 128.67803 * 18 17 16 20 20 C 1.51270 * 118.29815 * 308.65139 * 18 17 16 21 21 H 1.09005 * 109.46943 * 63.00569 * 1 2 3 22 22 H 1.09010 * 109.47251 * 182.99787 * 1 2 3 23 23 H 1.08997 * 109.47529 * 303.00118 * 1 2 3 24 24 H 1.09000 * 109.46928 * 239.99603 * 2 1 3 25 25 H 1.09003 * 109.46677 * 119.99879 * 2 1 3 26 26 H 1.08996 * 109.46741 * 176.56694 * 4 3 2 27 27 H 1.08997 * 109.47168 * 56.57011 * 4 3 2 28 28 H 0.96998 * 119.99310 * 359.97438 * 8 7 5 29 29 H 1.09003 * 109.41354 * 303.68457 * 15 13 3 30 30 H 1.08997 * 109.41728 * 63.46663 * 15 13 3 31 31 H 1.08998 * 109.48461 * 176.42236 * 16 15 13 32 32 H 1.09001 * 109.48178 * 56.37457 * 16 15 13 33 33 H 1.08998 * 109.62405 * 294.90685 * 17 16 15 34 34 H 1.08998 * 109.78133 * 174.43323 * 17 16 15 35 35 H 1.09001 * 109.62647 * 291.63379 * 20 18 17 36 36 H 1.09000 * 109.62517 * 171.06682 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6153 2.0862 -1.2259 5 6 2.2539 1.4221 -2.4184 6 1 2.9639 0.6210 -2.2745 7 6 1.9319 1.8372 -3.6931 8 7 1.0678 2.8130 -3.8684 9 14 2.7240 1.0144 -5.1714 10 1 3.9774 1.7290 -5.5230 11 1 1.7884 1.0598 -6.3236 12 1 3.0360 -0.3997 -4.8426 13 6 1.5603 2.1057 1.1947 14 1 0.4713 2.1528 1.1946 15 6 2.0393 1.3724 2.4486 16 6 1.4907 2.0661 3.6966 17 6 2.0611 3.4857 3.7820 18 6 1.7588 4.2043 2.4857 19 8 1.2324 5.2912 2.4883 20 6 2.1332 3.5268 1.1861 21 1 -0.3633 0.4665 -0.9158 22 1 -0.3634 -1.0263 0.0537 23 1 -0.3634 0.5597 0.8618 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.9381 3.1259 -1.1728 27 1 0.5307 2.0472 -1.3258 28 1 0.6568 3.2404 -3.1008 29 1 1.6863 0.3414 2.4226 30 1 3.1288 1.3804 2.4791 31 1 1.7824 1.5032 4.5833 32 1 0.4034 2.1141 3.6375 33 1 3.1397 3.4385 3.9316 34 1 1.5994 4.0194 4.6127 35 1 3.2186 3.4834 1.0952 36 1 1.7151 4.0851 0.3485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086600837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = -71.284850 kcal Electronic energy + Delta-G solvation = -16294.947274 eV Core-core repulsion = 13777.598403 eV Total energy + Delta-G solvation = -2517.348871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20942 -39.38283 -36.41954 -34.81016 -32.30584 -30.35478 -29.75719 -27.52570 -25.22021 -24.07694 -22.81605 -20.89380 -20.11028 -18.70725 -17.56686 -16.95755 -16.24260 -15.89898 -15.71095 -15.59887 -15.45438 -15.13456 -14.43294 -14.00275 -13.81676 -13.43865 -13.23613 -13.13616 -13.08225 -12.59074 -12.46481 -12.40932 -11.94325 -11.90930 -11.83312 -11.53334 -11.20062 -10.77283 -10.54932 -10.49797 -9.05056 -8.65822 -6.36089 0.83868 1.52536 1.61710 1.78990 2.55848 2.94593 3.16605 3.28695 3.66213 3.84622 3.96423 4.08208 4.20034 4.26661 4.36294 4.42000 4.47233 4.60846 4.69851 4.71017 4.83719 4.93282 4.98437 5.00879 5.07968 5.16007 5.20604 5.26222 5.36094 5.47004 5.83324 6.01486 6.38267 6.43992 6.45426 6.66990 7.44645 8.72093 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.007556 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.381153 B = 3704.555848 C = 4159.152129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.591 4.591 6 H 0.057 0.943 7 C -0.041 4.041 8 N -0.942 5.942 9 Si 1.122 2.878 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.088 3.912 14 H 0.022 0.978 15 C -0.112 4.112 16 C -0.103 4.103 17 C -0.157 4.157 18 C 0.369 3.631 19 O -0.507 6.507 20 C -0.166 4.166 21 H 0.020 0.980 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.100 0.900 26 H -0.001 1.001 27 H -0.039 1.039 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -5.983 15.856 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.069 4.069 3 N -0.251 5.251 4 C 0.061 3.939 5 C -0.630 4.630 6 H 0.076 0.924 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.943 3.057 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.021 4.021 14 H 0.040 0.960 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.195 4.195 18 C 0.248 3.752 19 O -0.384 6.384 20 C -0.204 4.204 21 H 0.039 0.961 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.016 0.984 27 H -0.021 1.021 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.218 -5.431 14.235 15.572 hybrid contribution -1.332 0.653 0.931 1.751 sum 1.886 -4.778 15.166 16.012 Atomic orbital electron populations 1.22284 0.98882 1.02421 1.00203 1.22108 0.92533 0.89820 1.02487 1.62254 1.59052 1.02700 1.01125 1.19592 0.91925 0.93508 0.88857 1.22304 1.27151 1.21080 0.92434 0.92445 1.27386 0.95921 0.96079 1.04385 1.70908 1.28918 1.24471 1.33725 0.82876 0.75349 0.75634 0.71844 1.20012 1.21225 1.19056 1.21630 0.95973 0.91827 0.92656 0.95999 1.21707 1.02626 0.99621 0.91027 1.21507 1.00302 0.93283 0.99023 1.22342 1.05563 0.97495 0.94078 1.25423 0.71302 0.84367 0.94135 1.90377 1.34582 1.22748 1.90684 1.22417 1.04311 0.97288 0.96387 0.96076 0.90395 0.92408 0.92264 0.88240 0.98358 1.02135 0.94032 0.89776 0.89544 0.86801 0.92254 0.85494 0.88276 0.86910 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.17 9.23 71.98 0.66 -5.50 16 2 C 0.06 2.07 5.46 86.30 0.47 2.54 16 3 N -0.53 -21.47 4.59 -875.19 -4.02 -25.49 16 4 C 0.19 9.85 3.60 85.56 0.31 10.16 16 5 C -0.59 -33.56 8.33 25.60 0.21 -33.35 16 6 H 0.06 3.20 7.16 -2.91 -0.02 3.18 16 7 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 8 N -0.94 -59.53 13.65 21.45 0.29 -59.24 16 9 Si 1.12 50.85 29.90 68.60 2.05 52.90 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.09 2.89 1.52 44.98 0.07 2.96 16 14 H 0.02 0.79 6.37 -2.39 -0.02 0.78 16 15 C -0.11 -2.44 4.91 30.57 0.15 -2.29 16 16 C -0.10 -1.68 5.94 30.66 0.18 -1.50 16 17 C -0.16 -2.89 6.17 30.11 0.19 -2.70 16 18 C 0.37 11.04 6.72 29.46 0.20 11.23 16 19 O -0.51 -19.21 17.89 -1.45 -0.03 -19.24 16 20 C -0.17 -5.70 4.99 30.11 0.15 -5.55 16 21 H 0.02 0.88 6.56 -2.38 -0.02 0.87 16 22 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 23 H 0.06 1.81 6.31 -2.39 -0.02 1.80 16 24 H 0.06 2.42 6.70 -2.39 -0.02 2.40 16 25 H 0.10 2.74 6.15 -2.39 -0.01 2.73 16 26 H 0.00 -0.08 6.01 -2.39 -0.01 -0.10 16 27 H -0.04 -2.23 5.94 -2.39 -0.01 -2.24 16 28 H 0.25 16.22 7.18 -92.71 -0.67 15.55 16 29 H 0.08 1.67 6.15 -2.39 -0.01 1.66 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.05 2.03 6.55 -2.39 -0.02 2.01 16 Total: -1.00 -71.50 277.73 2.52 -68.98 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.16 Total: 8.01 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.05 Total: -25.93 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -3.73 Total: -84.73 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.03 Total: -19.24 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -71.50 2.52 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086600837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.303 kcal (2) G-P(sol) polarization free energy of solvation -71.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds