Wall clock time and date at job start Mon Mar 30 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47268 * 2 1 4 4 C 1.50707 * 109.47093 * 240.00173 * 2 1 3 5 5 H 1.07998 * 120.00184 * 267.80894 * 4 2 1 6 6 C 1.37880 * 119.99700 * 87.81114 * 4 2 1 7 7 N 1.31511 * 120.00139 * 353.80288 * 6 4 2 8 8 Si 1.86796 * 119.99805 * 173.53199 * 6 4 2 9 9 H 1.48501 * 109.47016 * 89.99648 * 8 6 4 10 10 H 1.48493 * 109.47178 * 209.99904 * 8 6 4 11 11 H 1.48504 * 109.47153 * 330.00000 * 8 6 4 12 12 N 1.46895 * 109.47137 * 120.00142 * 2 1 3 13 13 C 1.47605 * 111.00221 * 198.87334 * 12 2 1 14 14 C 1.52878 * 87.77657 * 138.23657 * 13 12 2 15 15 C 1.47581 * 111.00274 * 295.00273 * 12 2 1 16 16 C 1.52636 * 114.19764 * 88.30895 * 14 13 12 17 17 C 1.53298 * 108.88057 * 185.46170 * 16 14 13 18 18 O 1.42897 * 109.30294 * 304.97045 * 17 16 14 19 19 C 1.42903 * 114.38979 * 63.11715 * 18 17 16 20 20 C 1.52630 * 114.20203 * 220.44722 * 14 13 12 21 21 H 1.09001 * 109.46952 * 66.47908 * 1 2 3 22 22 H 1.08993 * 109.47090 * 186.47723 * 1 2 3 23 23 H 1.08994 * 109.46951 * 306.48021 * 1 2 3 24 24 H 0.96999 * 120.00349 * 354.59881 * 7 6 4 25 25 H 1.08993 * 113.50749 * 252.96343 * 13 12 2 26 26 H 1.09000 * 113.49888 * 23.51216 * 13 12 2 27 27 H 1.09006 * 113.49975 * 336.49012 * 15 12 2 28 28 H 1.08997 * 113.50548 * 106.97422 * 15 12 2 29 29 H 1.09000 * 109.56828 * 305.27724 * 16 14 13 30 30 H 1.09000 * 109.56934 * 65.64258 * 16 14 13 31 31 H 1.09002 * 109.49922 * 185.02198 * 17 16 14 32 32 H 1.09003 * 109.50422 * 64.91495 * 17 16 14 33 33 H 1.09007 * 109.50165 * 176.94024 * 19 18 17 34 34 H 1.08999 * 109.52772 * 56.85069 * 19 18 17 35 35 H 1.08997 * 109.57109 * 294.36053 * 20 14 13 36 36 H 1.09010 * 109.57221 * 54.72124 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2461 -1.7684 -1.1939 6 6 2.2191 -0.0096 -2.4032 7 7 1.8451 1.2487 -2.4839 8 14 3.0103 -0.8450 -3.8746 9 1 1.9577 -1.4763 -4.7105 10 1 3.7442 0.1631 -4.6808 11 1 3.9580 -1.8863 -3.4023 12 7 2.0197 -0.6925 1.1994 13 6 3.4253 -0.3385 1.4778 14 6 3.0488 -0.2541 2.9571 15 6 1.6470 0.0424 2.4237 16 6 3.1646 -1.5776 3.7086 17 6 2.6320 -1.3872 5.1335 18 8 3.3268 -0.3052 5.7568 19 6 3.1316 0.9625 5.1267 20 6 3.6939 0.9118 3.7014 21 1 -0.3633 0.4101 -0.9423 22 1 -0.3633 -1.0210 0.1159 23 1 -0.3633 0.6110 0.8263 24 1 1.3676 1.6610 -1.7471 25 1 4.1283 -1.1407 1.2533 26 1 3.7254 0.6182 1.0504 27 1 1.4617 1.1032 2.2545 28 1 0.8528 -0.4386 2.9947 29 1 2.5765 -2.3401 3.1979 30 1 4.2096 -1.8851 3.7475 31 1 2.7917 -2.3005 5.7067 32 1 1.5662 -1.1619 5.0965 33 1 3.6498 1.7350 5.6950 34 1 2.0664 1.1908 5.0897 35 1 4.7737 0.7678 3.7398 36 1 3.4664 1.8449 3.1858 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:02 Heat of formation + Delta-G solvation = -24.742182 kcal Electronic energy + Delta-G solvation = -16398.439755 eV Core-core repulsion = 13883.109125 eV Total energy + Delta-G solvation = -2515.330630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58279 -37.83285 -34.23700 -31.81925 -31.10810 -29.38504 -25.86083 -25.17762 -24.11796 -23.59995 -21.81427 -19.93149 -18.11841 -16.88762 -15.94486 -15.89564 -15.10095 -14.71526 -14.49248 -14.15820 -13.72828 -13.10841 -12.83766 -12.67361 -12.19571 -11.90602 -11.49817 -11.19413 -11.16516 -10.91997 -10.76549 -10.72322 -10.50744 -10.27837 -10.13068 -9.98160 -9.62236 -9.18453 -8.63788 -8.33618 -7.81553 -6.38081 -4.08990 3.42471 3.45741 3.62116 3.93303 4.49734 4.61108 4.70751 4.95643 5.13319 5.18160 5.30278 5.33213 5.47415 5.56585 5.68999 5.78713 5.82913 5.95839 5.99954 6.10694 6.17076 6.28533 6.35866 6.39823 6.43006 6.57402 6.66207 6.74276 6.93072 7.08078 7.26057 7.58365 7.96524 8.24801 8.57944 8.84668 9.62843 10.99153 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046981 B = 0.006860 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.841376 B = 4080.870886 C = 4181.035020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.162 3.838 3 H 0.010 0.990 4 C -0.579 4.579 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 1.069 2.931 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.288 1.288 12 N -0.458 5.458 13 C 0.032 3.968 14 C -0.098 4.098 15 C 0.004 3.996 16 C -0.120 4.120 17 C 0.063 3.937 18 O -0.388 6.388 19 C 0.065 3.935 20 C -0.139 4.139 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.015 0.985 24 H 0.268 0.732 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -1.571 12.924 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 H 0.028 0.972 4 C -0.618 4.618 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.551 5.551 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.181 5.181 13 C -0.098 4.098 14 C -0.098 4.098 15 C -0.125 4.125 16 C -0.157 4.157 17 C -0.014 4.014 18 O -0.307 6.307 19 C -0.012 4.012 20 C -0.177 4.177 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.473 -2.023 11.387 11.827 hybrid contribution -0.645 0.739 1.124 1.491 sum 1.827 -1.284 12.511 12.709 Atomic orbital electron populations 1.21872 0.98613 0.99594 0.98834 1.19986 0.91867 0.93042 0.89611 0.97236 1.21829 1.47731 0.97219 0.95002 0.92642 1.25838 0.96166 0.95687 1.00874 1.70774 1.36812 1.12405 1.35087 0.83545 0.76420 0.75078 0.75181 1.21493 1.21005 1.21431 1.68974 1.03549 1.44075 1.01467 1.23442 0.94299 1.00352 0.91665 1.21699 0.97435 0.95237 0.95463 1.23691 0.95826 0.97721 0.95277 1.21772 1.02203 0.96690 0.95057 1.22617 0.95448 0.89827 0.93480 1.87837 1.72121 1.16569 1.54187 1.22552 0.99849 0.85603 0.93160 1.22079 1.01018 0.98472 0.96106 0.93057 0.93674 0.96607 0.92094 0.90830 0.92056 0.92594 0.91347 0.89659 0.91263 0.89160 0.93296 0.89308 0.93334 0.91018 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.91 37.16 0.33 -2.74 16 2 C 0.16 4.08 1.29 -68.86 -0.09 3.99 16 3 H 0.01 0.27 6.42 -51.93 -0.33 -0.06 16 4 C -0.58 -16.29 8.35 -34.44 -0.29 -16.58 16 5 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 6 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 7 N -0.91 -27.37 13.56 55.43 0.75 -26.62 16 8 Si 1.07 25.34 29.91 -169.99 -5.08 20.25 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.46 -9.93 5.92 -237.89 -1.41 -11.34 16 13 C 0.03 0.62 6.62 -7.23 -0.05 0.58 16 14 C -0.10 -1.55 0.86 -155.01 -0.13 -1.68 16 15 C 0.00 0.08 5.75 -7.23 -0.04 0.03 16 16 C -0.12 -1.70 5.33 -26.76 -0.14 -1.84 16 17 C 0.06 0.79 6.82 37.31 0.25 1.04 16 18 O -0.39 -5.33 10.72 -35.23 -0.38 -5.70 16 19 C 0.07 0.80 6.82 37.32 0.25 1.06 16 20 C -0.14 -1.89 5.39 -26.76 -0.14 -2.04 16 21 H 0.05 1.27 7.78 -51.93 -0.40 0.87 16 22 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.01 0.32 7.55 -51.93 -0.39 -0.07 16 24 H 0.27 7.99 6.43 -40.82 -0.26 7.72 16 25 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 26 H 0.06 1.29 7.58 -51.93 -0.39 0.90 16 27 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 28 H 0.07 1.15 7.86 -51.93 -0.41 0.75 16 29 H 0.08 1.29 7.95 -51.93 -0.41 0.88 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.98 8.01 -51.92 -0.42 0.56 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -30.13 282.94 -7.99 -38.12 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.00 Total: -1.21 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.14 Total: -17.76 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.66 Total: -37.96 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.38 Total: -5.70 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.13 -7.99 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.377 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds