Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47268 * 2 1 4 4 C 1.50707 * 109.47093 * 240.00173 * 2 1 3 5 5 H 1.07998 * 120.00184 * 267.80894 * 4 2 1 6 6 C 1.37880 * 119.99700 * 87.81114 * 4 2 1 7 7 N 1.31511 * 120.00139 * 353.80288 * 6 4 2 8 8 Si 1.86796 * 119.99805 * 173.53199 * 6 4 2 9 9 H 1.48501 * 109.47016 * 89.99648 * 8 6 4 10 10 H 1.48493 * 109.47178 * 209.99904 * 8 6 4 11 11 H 1.48504 * 109.47153 * 330.00000 * 8 6 4 12 12 N 1.46895 * 109.47137 * 120.00142 * 2 1 3 13 13 C 1.47605 * 111.00221 * 198.87334 * 12 2 1 14 14 C 1.52878 * 87.77657 * 138.23657 * 13 12 2 15 15 C 1.47581 * 111.00274 * 295.00273 * 12 2 1 16 16 C 1.52636 * 114.19764 * 88.30895 * 14 13 12 17 17 C 1.53298 * 108.88057 * 185.46170 * 16 14 13 18 18 O 1.42897 * 109.30294 * 304.97045 * 17 16 14 19 19 C 1.42903 * 114.38979 * 63.11715 * 18 17 16 20 20 C 1.52630 * 114.20203 * 220.44722 * 14 13 12 21 21 H 1.09001 * 109.46952 * 66.47908 * 1 2 3 22 22 H 1.08993 * 109.47090 * 186.47723 * 1 2 3 23 23 H 1.08994 * 109.46951 * 306.48021 * 1 2 3 24 24 H 0.96999 * 120.00349 * 354.59881 * 7 6 4 25 25 H 1.08993 * 113.50749 * 252.96343 * 13 12 2 26 26 H 1.09000 * 113.49888 * 23.51216 * 13 12 2 27 27 H 1.09006 * 113.49975 * 336.49012 * 15 12 2 28 28 H 1.08997 * 113.50548 * 106.97422 * 15 12 2 29 29 H 1.09000 * 109.56828 * 305.27724 * 16 14 13 30 30 H 1.09000 * 109.56934 * 65.64258 * 16 14 13 31 31 H 1.09002 * 109.49922 * 185.02198 * 17 16 14 32 32 H 1.09003 * 109.50422 * 64.91495 * 17 16 14 33 33 H 1.09007 * 109.50165 * 176.94024 * 19 18 17 34 34 H 1.08999 * 109.52772 * 56.85069 * 19 18 17 35 35 H 1.08997 * 109.57109 * 294.36053 * 20 14 13 36 36 H 1.09010 * 109.57221 * 54.72124 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2461 -1.7684 -1.1939 6 6 2.2191 -0.0096 -2.4032 7 7 1.8451 1.2487 -2.4839 8 14 3.0103 -0.8450 -3.8746 9 1 1.9577 -1.4763 -4.7105 10 1 3.7442 0.1631 -4.6808 11 1 3.9580 -1.8863 -3.4023 12 7 2.0197 -0.6925 1.1994 13 6 3.4253 -0.3385 1.4778 14 6 3.0488 -0.2541 2.9571 15 6 1.6470 0.0424 2.4237 16 6 3.1646 -1.5776 3.7086 17 6 2.6320 -1.3872 5.1335 18 8 3.3268 -0.3052 5.7568 19 6 3.1316 0.9625 5.1267 20 6 3.6939 0.9118 3.7014 21 1 -0.3633 0.4101 -0.9423 22 1 -0.3633 -1.0210 0.1159 23 1 -0.3633 0.6110 0.8263 24 1 1.3676 1.6610 -1.7471 25 1 4.1283 -1.1407 1.2533 26 1 3.7254 0.6182 1.0504 27 1 1.4617 1.1032 2.2545 28 1 0.8528 -0.4386 2.9947 29 1 2.5765 -2.3401 3.1979 30 1 4.2096 -1.8851 3.7475 31 1 2.7917 -2.3005 5.7067 32 1 1.5662 -1.1619 5.0965 33 1 3.6498 1.7350 5.6950 34 1 2.0664 1.1908 5.0897 35 1 4.7737 0.7678 3.7398 36 1 3.4664 1.8449 3.1858 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -45.663644 kcal Electronic energy + Delta-G solvation = -16399.346978 eV Core-core repulsion = 13883.109125 eV Total energy + Delta-G solvation = -2516.237852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.99945 -39.06831 -36.13419 -33.50546 -32.15861 -31.09612 -27.63950 -26.68607 -25.99689 -24.68199 -23.19860 -21.74655 -19.48191 -18.85095 -17.24814 -16.95141 -16.56140 -16.21516 -15.74555 -15.66422 -15.59746 -14.73672 -14.31953 -14.02395 -13.74962 -13.29151 -13.19106 -13.09327 -12.65202 -12.62660 -12.28110 -12.19066 -12.08511 -11.96618 -11.54863 -11.49299 -11.00674 -10.71351 -10.47269 -10.34505 -9.60011 -8.65078 -6.36619 1.49834 1.57727 1.76427 2.52809 2.97522 3.08422 3.23133 3.31168 3.71182 4.01528 4.08092 4.10434 4.29441 4.41903 4.46153 4.50617 4.54539 4.59082 4.64581 4.69876 4.72398 4.81058 4.84571 4.88579 4.98969 5.02103 5.14802 5.19359 5.27006 5.37387 5.69310 5.95546 6.12941 6.27874 6.44300 6.64487 7.42740 8.72433 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046981 B = 0.006860 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.841376 B = 4080.870886 C = 4181.035020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.165 3.835 3 H -0.019 1.019 4 C -0.590 4.590 5 H 0.042 0.958 6 C -0.029 4.029 7 N -0.937 5.937 8 Si 1.114 2.886 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.473 5.473 13 C 0.023 3.977 14 C -0.076 4.076 15 C 0.007 3.993 16 C -0.117 4.117 17 C 0.066 3.934 18 O -0.397 6.397 19 C 0.067 3.933 20 C -0.137 4.137 21 H 0.029 0.971 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.257 0.743 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -2.210 14.421 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 H -0.001 1.001 4 C -0.629 4.629 5 H 0.060 0.940 6 C -0.227 4.227 7 N -0.575 5.575 8 Si 0.936 3.064 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.195 5.195 13 C -0.106 4.106 14 C -0.076 4.076 15 C -0.122 4.122 16 C -0.155 4.155 17 C -0.011 4.011 18 O -0.316 6.316 19 C -0.010 4.010 20 C -0.175 4.175 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.685 -2.669 12.912 13.456 hybrid contribution -0.710 0.927 0.706 1.365 sum 1.975 -1.741 13.618 13.870 Atomic orbital electron populations 1.21696 0.97380 0.99996 0.98706 1.19825 0.92747 0.91357 0.90383 1.00132 1.22097 1.47580 0.96721 0.96487 0.93982 1.27193 0.96173 0.95613 1.03744 1.70887 1.38245 1.13391 1.34936 0.82973 0.76297 0.74625 0.72517 1.19905 1.20733 1.20017 1.68883 1.04849 1.44327 1.01450 1.23473 0.93228 0.98963 0.94945 1.21615 0.95380 0.97273 0.93379 1.23722 0.97726 0.97152 0.93563 1.21776 1.02561 0.95124 0.96048 1.22686 0.95497 0.90610 0.92274 1.87841 1.72375 1.17070 1.54347 1.22650 1.00454 0.85815 0.92080 1.22077 1.01207 0.97195 0.96989 0.95209 0.93439 0.94057 0.93281 0.91427 0.94155 0.93076 0.89754 0.90673 0.90767 0.86918 0.92757 0.87020 0.92752 0.90534 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.91 71.98 0.64 -4.98 16 2 C 0.16 8.45 1.29 44.17 0.06 8.51 16 3 H -0.02 -1.07 6.42 -2.38 -0.02 -1.08 16 4 C -0.59 -33.83 8.35 25.60 0.21 -33.62 16 5 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 6 C -0.03 -1.68 5.45 84.66 0.46 -1.21 16 7 N -0.94 -57.26 13.56 21.45 0.29 -56.97 16 8 Si 1.11 51.09 29.91 68.60 2.05 53.14 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.47 -20.54 5.92 -906.54 -5.36 -25.90 16 13 C 0.02 0.93 6.62 83.71 0.55 1.48 16 14 C -0.08 -2.30 0.86 -52.50 -0.04 -2.35 16 15 C 0.01 0.26 5.75 83.72 0.48 0.74 16 16 C -0.12 -3.09 5.33 30.57 0.16 -2.93 16 17 C 0.07 1.44 6.82 72.08 0.49 1.93 16 18 O -0.40 -9.57 10.72 -148.98 -1.60 -11.16 16 19 C 0.07 1.43 6.82 72.08 0.49 1.92 16 20 C -0.14 -3.48 5.39 30.57 0.16 -3.31 16 21 H 0.03 1.49 7.78 -2.39 -0.02 1.47 16 22 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.04 1.69 7.55 -2.39 -0.02 1.67 16 24 H 0.26 15.84 6.43 -92.71 -0.60 15.24 16 25 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 26 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 27 H 0.05 1.83 7.69 -2.38 -0.02 1.81 16 28 H 0.08 2.65 7.86 -2.39 -0.02 2.63 16 29 H 0.07 2.15 7.95 -2.39 -0.02 2.13 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.14 7.90 -2.39 -0.02 1.13 16 33 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.81 8.01 -2.38 -0.02 1.79 16 Total: -1.00 -64.82 282.94 0.26 -64.56 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.20 Total: 10.16 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.68 Total: -33.82 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -5.07 Total: -82.88 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.60 Total: -11.16 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -64.82 0.26 -64.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.899 kcal (2) G-P(sol) polarization free energy of solvation -64.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds