Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00136 * 2 1 4 4 H 1.08001 * 119.99671 * 200.40140 * 3 2 1 5 5 C 1.38813 * 119.99976 * 20.40352 * 3 2 1 6 6 N 1.31612 * 120.00200 * 14.97795 * 5 3 2 7 7 Si 1.86804 * 119.99898 * 194.97992 * 5 3 2 8 8 H 1.48504 * 109.47043 * 85.00042 * 7 5 3 9 9 H 1.48488 * 109.47297 * 205.00090 * 7 5 3 10 10 H 1.48504 * 109.46950 * 325.00527 * 7 5 3 11 11 C 1.46501 * 119.99567 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.55102 * 180.20524 * 11 2 1 13 13 C 1.53145 * 109.55583 * 60.00045 * 11 2 1 14 14 C 1.53046 * 109.41842 * 181.43202 * 13 11 2 15 15 O 1.43035 * 109.44826 * 59.30838 * 14 13 11 16 16 C 1.42574 * 113.85585 * 301.28929 * 15 14 13 17 17 C 1.53389 * 113.62880 * 188.21143 * 16 15 14 18 18 C 1.53853 * 86.98297 * 89.43180 * 17 16 15 19 19 C 1.53425 * 113.56136 * 286.13428 * 16 15 14 20 20 C 1.52814 * 112.94246 * 57.09815 * 16 15 14 21 21 H 1.09006 * 109.46903 * 275.11908 * 1 2 3 22 22 H 1.09005 * 109.46879 * 35.11001 * 1 2 3 23 23 H 1.08992 * 109.47232 * 155.11534 * 1 2 3 24 24 H 0.97004 * 120.00203 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.47770 * 61.44467 * 13 11 2 26 26 H 1.09000 * 109.49083 * 301.42521 * 13 11 2 27 27 H 1.08992 * 109.47961 * 179.31118 * 14 13 11 28 28 H 1.09004 * 109.46844 * 299.32150 * 14 13 11 29 29 H 1.08996 * 113.63591 * 203.95520 * 17 16 15 30 30 H 1.09010 * 113.62931 * 334.90864 * 17 16 15 31 31 H 1.09006 * 113.60100 * 270.60038 * 18 17 16 32 32 H 1.08993 * 113.68067 * 139.74213 * 18 17 16 33 33 H 1.08998 * 113.62827 * 25.02656 * 19 16 15 34 34 H 1.09004 * 113.63003 * 155.89857 * 19 16 15 35 35 H 1.09000 * 109.57082 * 186.23060 * 20 16 15 36 36 H 1.09003 * 109.56432 * 65.88581 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3261 5 6 1.5210 2.3503 0.4191 6 7 0.3882 2.2833 1.0858 7 14 2.2827 4.0126 0.0368 8 1 1.8679 4.4465 -1.3215 9 1 1.8232 5.0095 1.0367 10 1 3.7627 3.9031 0.0909 11 6 2.1975 -1.2688 0.0006 12 1 3.2694 -1.0712 0.0042 13 6 1.8288 -2.0740 -1.2488 14 6 2.5682 -3.4139 -1.2272 15 8 2.2037 -4.1399 -0.0499 16 6 2.4919 -3.4512 1.1647 17 6 2.2865 -4.3074 2.4206 18 6 3.7539 -4.7428 2.2649 19 6 3.9857 -3.4208 1.5130 20 6 1.8212 -2.0805 1.2457 21 1 -0.3633 0.0917 1.0236 22 1 -0.3633 0.8407 -0.5911 23 1 -0.3633 -0.9322 -0.4324 24 1 -0.0509 3.0970 1.3790 25 1 2.1157 -1.5148 -2.1394 26 1 0.7536 -2.2524 -1.2625 27 1 2.2971 -3.9929 -2.1099 28 1 3.6435 -3.2354 -1.2257 29 1 2.0972 -3.7236 3.3214 30 1 1.5728 -5.1199 2.2836 31 1 3.8828 -5.6278 1.6418 32 1 4.2937 -4.8081 3.2095 33 1 4.6386 -3.5201 0.6458 34 1 4.2664 -2.5910 2.1617 35 1 2.1640 -1.5585 2.1391 36 1 0.7391 -2.2054 1.2867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086903989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = -4.960831 kcal Electronic energy + Delta-G solvation = -16570.758077 eV Core-core repulsion = 14056.285231 eV Total energy + Delta-G solvation = -2514.472846 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12433 -36.41188 -35.26549 -32.39649 -29.81753 -29.07427 -26.00569 -25.54072 -24.38270 -22.83233 -21.90291 -19.33997 -18.52038 -16.77095 -15.80689 -15.71950 -14.83933 -14.62724 -14.10259 -13.82081 -13.47174 -13.08853 -12.76990 -12.38151 -12.13132 -11.91066 -11.24353 -11.06971 -10.90416 -10.83801 -10.62507 -10.50826 -10.36763 -10.30392 -10.18017 -9.92652 -9.81340 -9.32541 -8.90563 -8.50515 -6.74043 -5.69315 -3.12889 3.39506 3.45602 3.46669 3.97316 4.50463 4.79808 4.87163 5.03889 5.21422 5.35829 5.42773 5.48347 5.60916 5.70197 5.86652 5.89475 5.93543 6.01929 6.05925 6.14099 6.22974 6.26058 6.40226 6.44662 6.58075 6.70551 6.81174 6.97854 7.06132 7.43290 7.66315 7.75893 7.83442 8.41852 9.26673 9.91205 10.40270 11.35458 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.007584 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.056976 B = 3691.072253 C = 3818.600200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.180 3.820 12 H 0.061 0.939 13 C -0.169 4.169 14 C 0.066 3.934 15 O -0.364 6.364 16 C 0.097 3.903 17 C -0.126 4.126 18 C -0.135 4.135 19 C -0.163 4.163 20 C -0.142 4.142 21 H 0.028 0.972 22 H 0.040 0.960 23 H -0.001 1.001 24 H 0.252 0.748 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -11.716 -0.363 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.072 3.928 12 H 0.079 0.921 13 C -0.209 4.209 14 C -0.011 4.011 15 O -0.283 6.283 16 C 0.057 3.943 17 C -0.164 4.164 18 C -0.173 4.173 19 C -0.201 4.201 20 C -0.182 4.182 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.245 -11.718 -0.302 12.467 hybrid contribution 0.386 1.302 -0.195 1.372 sum 4.631 -10.416 -0.496 11.410 Atomic orbital electron populations 1.20745 0.82727 0.95366 0.99295 1.43980 1.01831 1.00195 1.85711 1.19239 0.96906 0.85081 1.37111 0.91426 1.24955 0.97935 0.98276 0.98652 1.70090 1.18905 1.26706 1.39544 0.86288 0.78593 0.84145 0.77614 1.21526 1.21791 1.20627 1.20304 0.95791 0.86013 0.90699 0.92117 1.22727 1.01217 0.95733 1.01208 1.22539 0.98113 0.93256 0.87191 1.87794 1.84073 1.43326 1.13122 1.22259 0.94221 0.92647 0.85221 1.22951 0.97164 0.99638 0.96607 1.22790 0.96634 0.97726 1.00137 1.23471 0.97645 0.98164 1.00782 1.22584 1.00884 0.93468 1.01279 0.95366 0.94078 0.98206 0.93813 0.91295 0.91566 0.89667 0.93620 0.89001 0.90991 0.90273 0.91812 0.91431 0.89295 0.91067 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 7.92 59.85 0.47 4.59 16 2 N -0.60 -15.13 2.83 -173.20 -0.49 -15.62 16 3 C -0.25 -7.05 9.61 -15.06 -0.14 -7.19 16 4 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 5 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 6 N -0.91 -26.74 10.67 55.49 0.59 -26.15 16 7 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.76 2.60 -67.69 -0.18 3.59 16 12 H 0.06 1.29 7.82 -51.93 -0.41 0.88 16 13 C -0.17 -3.06 5.38 -26.63 -0.14 -3.20 16 14 C 0.07 1.01 6.73 37.18 0.25 1.26 16 15 O -0.36 -6.05 10.45 -35.23 -0.37 -6.42 16 16 C 0.10 1.55 1.03 -90.30 -0.09 1.46 16 17 C -0.13 -1.73 7.47 -26.09 -0.19 -1.93 16 18 C -0.14 -1.68 8.02 -25.85 -0.21 -1.89 16 19 C -0.16 -2.31 7.11 -26.07 -0.19 -2.50 16 20 C -0.14 -2.72 4.62 -26.66 -0.12 -2.84 16 21 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 22 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 23 H 0.00 -0.01 6.42 -51.93 -0.33 -0.35 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.66 7.21 -51.93 -0.37 0.28 16 29 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 30 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.93 7.26 -51.93 -0.38 0.56 16 34 H 0.09 1.27 8.02 -51.93 -0.42 0.85 16 35 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 36 H 0.06 1.30 7.52 -51.93 -0.39 0.91 16 LS Contribution 278.84 15.07 4.20 4.20 Total: -1.00 -29.66 278.84 -7.62 -37.28 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.90 Total: -1.58 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.63 Total: -8.74 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.10 Total: -41.77 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.37 Total: -6.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.66 -7.62 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086903989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.316 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds