Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00136 * 2 1 4 4 H 1.08001 * 119.99671 * 200.40140 * 3 2 1 5 5 C 1.38813 * 119.99976 * 20.40352 * 3 2 1 6 6 N 1.31612 * 120.00200 * 14.97795 * 5 3 2 7 7 Si 1.86804 * 119.99898 * 194.97992 * 5 3 2 8 8 H 1.48504 * 109.47043 * 85.00042 * 7 5 3 9 9 H 1.48488 * 109.47297 * 205.00090 * 7 5 3 10 10 H 1.48504 * 109.46950 * 325.00527 * 7 5 3 11 11 C 1.46501 * 119.99567 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.55102 * 180.20524 * 11 2 1 13 13 C 1.53145 * 109.55583 * 60.00045 * 11 2 1 14 14 C 1.53046 * 109.41842 * 181.43202 * 13 11 2 15 15 O 1.43035 * 109.44826 * 59.30838 * 14 13 11 16 16 C 1.42574 * 113.85585 * 301.28929 * 15 14 13 17 17 C 1.53389 * 113.62880 * 188.21143 * 16 15 14 18 18 C 1.53853 * 86.98297 * 89.43180 * 17 16 15 19 19 C 1.53425 * 113.56136 * 286.13428 * 16 15 14 20 20 C 1.52814 * 112.94246 * 57.09815 * 16 15 14 21 21 H 1.09006 * 109.46903 * 275.11908 * 1 2 3 22 22 H 1.09005 * 109.46879 * 35.11001 * 1 2 3 23 23 H 1.08992 * 109.47232 * 155.11534 * 1 2 3 24 24 H 0.97004 * 120.00203 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.47770 * 61.44467 * 13 11 2 26 26 H 1.09000 * 109.49083 * 301.42521 * 13 11 2 27 27 H 1.08992 * 109.47961 * 179.31118 * 14 13 11 28 28 H 1.09004 * 109.46844 * 299.32150 * 14 13 11 29 29 H 1.08996 * 113.63591 * 203.95520 * 17 16 15 30 30 H 1.09010 * 113.62931 * 334.90864 * 17 16 15 31 31 H 1.09006 * 113.60100 * 270.60038 * 18 17 16 32 32 H 1.08993 * 113.68067 * 139.74213 * 18 17 16 33 33 H 1.08998 * 113.62827 * 25.02656 * 19 16 15 34 34 H 1.09004 * 113.63003 * 155.89857 * 19 16 15 35 35 H 1.09000 * 109.57082 * 186.23060 * 20 16 15 36 36 H 1.09003 * 109.56432 * 65.88581 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3261 5 6 1.5210 2.3503 0.4191 6 7 0.3882 2.2833 1.0858 7 14 2.2827 4.0126 0.0368 8 1 1.8679 4.4465 -1.3215 9 1 1.8232 5.0095 1.0367 10 1 3.7627 3.9031 0.0909 11 6 2.1975 -1.2688 0.0006 12 1 3.2694 -1.0712 0.0042 13 6 1.8288 -2.0740 -1.2488 14 6 2.5682 -3.4139 -1.2272 15 8 2.2037 -4.1399 -0.0499 16 6 2.4919 -3.4512 1.1647 17 6 2.2865 -4.3074 2.4206 18 6 3.7539 -4.7428 2.2649 19 6 3.9857 -3.4208 1.5130 20 6 1.8212 -2.0805 1.2457 21 1 -0.3633 0.0917 1.0236 22 1 -0.3633 0.8407 -0.5911 23 1 -0.3633 -0.9322 -0.4324 24 1 -0.0509 3.0970 1.3790 25 1 2.1157 -1.5148 -2.1394 26 1 0.7536 -2.2524 -1.2625 27 1 2.2971 -3.9929 -2.1099 28 1 3.6435 -3.2354 -1.2257 29 1 2.0972 -3.7236 3.3214 30 1 1.5728 -5.1199 2.2836 31 1 3.8828 -5.6278 1.6418 32 1 4.2937 -4.8081 3.2095 33 1 4.6386 -3.5201 0.6458 34 1 4.2664 -2.5910 2.1617 35 1 2.1640 -1.5585 2.1391 36 1 0.7391 -2.2054 1.2867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086903989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = -22.409220 kcal Electronic energy + Delta-G solvation = -16571.514696 eV Core-core repulsion = 14056.285231 eV Total energy + Delta-G solvation = -2515.229465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41484 -38.02132 -36.71383 -34.26667 -31.66268 -30.49034 -28.08570 -26.67759 -26.05085 -24.17371 -23.52233 -20.82668 -19.88633 -18.81182 -17.27325 -17.02865 -16.62178 -16.06038 -15.51740 -15.33690 -14.98824 -14.74527 -14.46382 -13.93004 -13.78569 -13.23565 -12.88101 -12.86280 -12.56981 -12.44779 -12.27357 -12.10005 -11.93577 -11.88078 -11.67480 -11.58096 -11.45134 -10.75001 -10.63477 -10.22436 -8.81490 -7.83568 -5.29790 1.44833 1.46766 1.54796 2.49159 2.75818 3.28251 3.54733 3.64392 3.77020 3.94288 4.01341 4.05653 4.25360 4.37634 4.46693 4.56334 4.62958 4.81141 4.82615 4.84456 4.88596 4.98438 5.04679 5.07899 5.11510 5.22139 5.31961 5.41878 5.46629 5.51557 5.61128 5.67616 6.30384 6.39091 7.13199 7.86352 8.31027 9.19804 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.007584 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.056976 B = 3691.072253 C = 3818.600200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.264 4.264 4 H 0.071 0.929 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.295 1.295 10 H -0.268 1.268 11 C 0.173 3.827 12 H 0.056 0.944 13 C -0.160 4.160 14 C 0.070 3.930 15 O -0.369 6.369 16 C 0.089 3.911 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.163 4.163 20 C -0.132 4.132 21 H 0.001 0.999 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.247 0.753 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -13.110 -0.844 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.222 1.222 10 H -0.193 1.193 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.200 4.200 14 C -0.007 4.007 15 O -0.288 6.288 16 C 0.048 3.952 17 C -0.163 4.163 18 C -0.157 4.157 19 C -0.200 4.200 20 C -0.172 4.172 21 H 0.019 0.981 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.762 -13.151 -0.793 14.379 hybrid contribution -0.078 1.706 -0.061 1.709 sum 5.683 -11.444 -0.854 12.806 Atomic orbital electron populations 1.20417 0.83147 0.95415 0.97273 1.44220 1.01902 1.01356 1.85907 1.19590 0.97190 0.86276 1.36345 0.91081 1.25749 0.98656 1.01699 0.98921 1.70258 1.20355 1.27150 1.40872 0.85251 0.78332 0.79653 0.77032 1.21252 1.22184 1.19309 1.20526 0.95044 0.84873 0.92889 0.92576 1.22595 1.00946 0.97065 0.99371 1.22634 0.98428 0.91782 0.87867 1.87803 1.84323 1.43276 1.13428 1.22360 0.95442 0.91140 0.86219 1.22996 0.98611 0.99335 0.95367 1.22731 0.95290 0.96770 1.00904 1.23462 0.96024 0.99297 1.01249 1.22409 0.99936 0.95371 0.99493 0.98111 0.96707 0.95655 0.94332 0.91362 0.92616 0.86774 0.92302 0.88738 0.90472 0.89397 0.89818 0.90835 0.89806 0.92858 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.46 7.92 127.77 1.01 10.48 16 2 N -0.61 -31.52 2.83 -701.89 -1.98 -33.50 16 3 C -0.26 -14.79 9.61 84.03 0.81 -13.98 16 4 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 5 C -0.06 -3.16 5.06 84.86 0.43 -2.73 16 6 N -0.94 -56.83 10.67 21.65 0.23 -56.60 16 7 Si 0.97 45.71 29.58 68.60 2.03 47.74 16 8 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.17 7.20 2.60 45.15 0.12 7.32 16 12 H 0.06 2.36 7.82 -2.39 -0.02 2.34 16 13 C -0.16 -5.59 5.38 30.66 0.16 -5.42 16 14 C 0.07 1.93 6.73 72.00 0.48 2.41 16 15 O -0.37 -11.33 10.45 -148.98 -1.56 -12.89 16 16 C 0.09 2.70 1.03 -10.58 -0.01 2.69 16 17 C -0.13 -3.18 7.47 31.01 0.23 -2.95 16 18 C -0.12 -2.58 8.02 31.16 0.25 -2.33 16 19 C -0.16 -4.25 7.11 31.02 0.22 -4.03 16 20 C -0.13 -5.06 4.62 30.64 0.14 -4.92 16 21 H 0.00 0.03 7.40 -2.38 -0.02 0.02 16 22 H 0.01 0.80 7.22 -2.38 -0.02 0.79 16 23 H 0.03 1.15 6.42 -2.39 -0.02 1.13 16 24 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.06 1.50 7.21 -2.38 -0.02 1.49 16 29 H 0.09 2.32 8.09 -2.39 -0.02 2.30 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.83 7.26 -2.39 -0.02 1.81 16 34 H 0.08 2.27 8.02 -2.38 -0.02 2.25 16 35 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 36 H 0.05 1.89 7.52 -2.39 -0.02 1.87 16 Total: -1.00 -63.67 278.84 3.60 -60.07 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.04 Total: 8.65 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.85 Total: -13.47 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -1.75 Total: -90.10 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.56 Total: -12.89 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -63.67 3.60 -60.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086903989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.658 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds