Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00099 * 2 1 4 4 H 1.07996 * 120.00504 * 203.44654 * 3 2 1 5 5 C 1.38815 * 119.99680 * 23.44809 * 3 2 1 6 6 N 1.31615 * 120.00049 * 11.55269 * 5 3 2 7 7 Si 1.86804 * 119.99899 * 191.54809 * 5 3 2 8 8 H 1.48500 * 109.47041 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46802 * 120.00473 * 7 5 3 10 10 H 1.48498 * 109.47057 * 240.00305 * 7 5 3 11 11 C 1.46495 * 120.00269 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.55803 * 180.19985 * 11 2 1 13 13 C 1.53155 * 109.63686 * 300.46445 * 11 2 1 14 14 C 1.53046 * 109.41174 * 178.51871 * 13 11 2 15 15 O 1.43046 * 109.44788 * 300.68383 * 14 13 11 16 16 C 1.42829 * 113.91530 * 58.72727 * 15 14 13 17 17 C 1.53415 * 113.58711 * 73.81521 * 16 15 14 18 18 C 1.53840 * 86.97267 * 89.67728 * 17 16 15 19 19 C 1.53387 * 113.78996 * 171.83290 * 16 15 14 20 20 C 1.52814 * 112.79168 * 302.96013 * 16 15 14 21 21 H 1.08999 * 109.47043 * 274.24394 * 1 2 3 22 22 H 1.09008 * 109.46960 * 34.23823 * 1 2 3 23 23 H 1.08999 * 109.47559 * 154.23888 * 1 2 3 24 24 H 0.97008 * 120.00134 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.48172 * 298.49890 * 13 11 2 26 26 H 1.08996 * 109.48412 * 58.53813 * 13 11 2 27 27 H 1.08999 * 109.47360 * 60.67352 * 14 13 11 28 28 H 1.08999 * 109.47922 * 180.68271 * 14 13 11 29 29 H 1.09004 * 113.63267 * 204.19498 * 17 16 15 30 30 H 1.08998 * 113.63382 * 335.15271 * 17 16 15 31 31 H 1.09000 * 113.60541 * 270.59086 * 18 17 16 32 32 H 1.09004 * 113.60334 * 139.72108 * 18 17 16 33 33 H 1.09003 * 113.63238 * 25.03642 * 19 16 15 34 34 H 1.09003 * 113.62954 * 155.98580 * 19 16 15 35 35 H 1.08993 * 109.56913 * 294.01280 * 20 16 15 36 36 H 1.09002 * 109.56009 * 173.78209 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3384 0.4784 6 7 0.4047 2.2579 1.1367 7 14 2.3367 4.0036 0.1878 8 1 3.5995 3.8232 -0.5726 9 1 1.4103 4.8656 -0.5892 10 1 2.6322 4.6457 1.4938 11 6 2.1975 -1.2686 -0.0006 12 1 3.2694 -1.0711 0.0031 13 6 1.8215 -2.0806 1.2424 14 6 2.5613 -3.4202 1.2178 15 8 2.2038 -4.1401 0.0346 16 6 2.4991 -3.4448 -1.1776 17 6 3.9948 -3.4116 -1.5175 18 6 3.7673 -4.7280 -2.2803 19 6 2.3008 -4.2919 -2.4409 20 6 1.8284 -2.0738 -1.2522 21 1 -0.3633 0.0760 1.0248 22 1 -0.3633 0.8496 -0.5782 23 1 -0.3634 -0.9255 -0.4466 24 1 -0.0201 3.0633 1.4714 25 1 2.1031 -1.5263 2.1376 26 1 0.7463 -2.2593 1.2484 27 1 3.6366 -3.2416 1.2236 28 1 2.2852 -4.0040 2.0959 29 1 4.2785 -2.5779 -2.1598 30 1 4.6430 -3.5170 -0.6476 31 1 3.8932 -5.6176 -1.6630 32 1 4.3113 -4.7857 -3.2232 33 1 1.5866 -5.1056 -2.3137 34 1 2.1162 -3.7015 -3.3383 35 1 0.7467 -2.1986 -1.3000 36 1 2.1746 -1.5460 -2.1408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086903992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = -5.484108 kcal Electronic energy + Delta-G solvation = -16554.424695 eV Core-core repulsion = 14039.929158 eV Total energy + Delta-G solvation = -2514.495537 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12285 -36.40378 -35.26351 -32.38394 -29.83245 -29.06146 -26.00273 -25.57362 -24.38917 -22.82289 -21.90422 -19.34973 -18.51220 -16.76191 -15.85771 -15.73193 -14.82601 -14.62001 -14.04884 -13.83026 -13.56033 -13.01342 -12.81023 -12.40774 -12.18469 -11.86714 -11.22699 -11.10385 -10.89481 -10.84906 -10.64492 -10.48627 -10.45044 -10.26031 -10.12442 -9.93213 -9.84620 -9.33059 -8.93184 -8.50665 -6.70415 -5.69613 -3.16292 3.37980 3.45043 3.47090 3.95838 4.49412 4.76140 4.83602 5.00365 5.18614 5.36775 5.44864 5.50792 5.62688 5.72617 5.84589 5.87907 5.90421 5.97204 6.02230 6.13761 6.23772 6.25704 6.37828 6.46854 6.55341 6.69214 6.82581 6.99028 7.07450 7.43177 7.65190 7.77629 7.83238 8.43378 9.26991 9.90632 10.40860 11.35008 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041600 B = 0.007536 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.916620 B = 3714.844147 C = 3933.156218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.181 3.819 12 H 0.061 0.939 13 C -0.167 4.167 14 C 0.065 3.935 15 O -0.365 6.365 16 C 0.099 3.901 17 C -0.163 4.163 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.145 4.145 21 H 0.028 0.972 22 H 0.041 0.959 23 H -0.001 1.001 24 H 0.251 0.749 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -11.622 -4.232 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.072 3.928 12 H 0.079 0.921 13 C -0.207 4.207 14 C -0.012 4.012 15 O -0.284 6.284 16 C 0.058 3.942 17 C -0.201 4.201 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.185 4.185 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.264 -11.628 -4.160 13.065 hybrid contribution 0.392 1.304 0.072 1.364 sum 4.656 -10.324 -4.088 12.041 Atomic orbital electron populations 1.20743 0.82796 0.95424 0.99162 1.43951 1.01796 1.00179 1.85783 1.19274 0.98504 0.85667 1.34846 0.91495 1.25042 0.97849 0.98520 0.98316 1.70079 1.18814 1.27051 1.39373 0.86198 0.78625 0.84410 0.77411 1.20355 1.21651 1.21748 1.20311 0.95799 0.86032 0.90644 0.92119 1.22739 1.00991 0.95378 1.01561 1.22585 0.98186 0.93571 0.86872 1.87835 1.84110 1.43353 1.13100 1.22245 0.94123 0.92379 0.85440 1.23470 0.97690 0.98157 1.00771 1.22789 0.96580 0.97820 1.00092 1.22947 0.97259 0.99717 0.96437 1.22565 1.01074 0.93851 1.00981 0.95401 0.94069 0.98267 0.93856 0.91092 0.91780 0.93645 0.89677 0.89375 0.91326 0.90213 0.91808 0.90949 0.89058 0.91559 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 7.98 59.85 0.48 4.60 16 2 N -0.60 -15.15 2.82 -173.20 -0.49 -15.64 16 3 C -0.25 -7.03 9.59 -15.06 -0.14 -7.18 16 4 H 0.07 1.82 7.82 -52.49 -0.41 1.41 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.82 10.66 55.49 0.59 -26.23 16 7 Si 0.90 22.02 29.57 -169.99 -5.03 17.00 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.18 3.78 2.60 -67.68 -0.18 3.60 16 12 H 0.06 1.29 7.84 -51.93 -0.41 0.88 16 13 C -0.17 -3.19 5.39 -26.63 -0.14 -3.33 16 14 C 0.06 1.03 6.73 37.18 0.25 1.28 16 15 O -0.36 -6.09 10.47 -35.23 -0.37 -6.46 16 16 C 0.10 1.54 1.03 -90.30 -0.09 1.44 16 17 C -0.16 -2.24 7.12 -26.08 -0.19 -2.43 16 18 C -0.14 -1.62 8.02 -25.86 -0.21 -1.83 16 19 C -0.13 -1.65 7.47 -26.09 -0.20 -1.84 16 20 C -0.15 -2.64 4.61 -26.66 -0.12 -2.76 16 21 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 22 H 0.04 1.11 7.27 -51.92 -0.38 0.74 16 23 H 0.00 -0.02 6.37 -51.93 -0.33 -0.36 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.06 1.29 7.63 -51.93 -0.40 0.89 16 27 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.19 8.02 -51.93 -0.42 0.77 16 30 H 0.07 0.94 7.27 -51.93 -0.38 0.56 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.07 1.27 6.51 -51.93 -0.34 0.93 16 36 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 LS Contribution 278.99 15.07 4.20 4.20 Total: -1.00 -29.74 278.99 -7.62 -37.36 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.90 Total: -1.72 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.63 Total: -8.51 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.10 Total: -41.86 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.37 Total: -6.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.74 -7.62 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086903992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.871 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds