Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00099 * 2 1 4 4 H 1.07996 * 120.00504 * 203.44654 * 3 2 1 5 5 C 1.38815 * 119.99680 * 23.44809 * 3 2 1 6 6 N 1.31615 * 120.00049 * 11.55269 * 5 3 2 7 7 Si 1.86804 * 119.99899 * 191.54809 * 5 3 2 8 8 H 1.48500 * 109.47041 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46802 * 120.00473 * 7 5 3 10 10 H 1.48498 * 109.47057 * 240.00305 * 7 5 3 11 11 C 1.46495 * 120.00269 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.55803 * 180.19985 * 11 2 1 13 13 C 1.53155 * 109.63686 * 300.46445 * 11 2 1 14 14 C 1.53046 * 109.41174 * 178.51871 * 13 11 2 15 15 O 1.43046 * 109.44788 * 300.68383 * 14 13 11 16 16 C 1.42829 * 113.91530 * 58.72727 * 15 14 13 17 17 C 1.53415 * 113.58711 * 73.81521 * 16 15 14 18 18 C 1.53840 * 86.97267 * 89.67728 * 17 16 15 19 19 C 1.53387 * 113.78996 * 171.83290 * 16 15 14 20 20 C 1.52814 * 112.79168 * 302.96013 * 16 15 14 21 21 H 1.08999 * 109.47043 * 274.24394 * 1 2 3 22 22 H 1.09008 * 109.46960 * 34.23823 * 1 2 3 23 23 H 1.08999 * 109.47559 * 154.23888 * 1 2 3 24 24 H 0.97008 * 120.00134 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.48172 * 298.49890 * 13 11 2 26 26 H 1.08996 * 109.48412 * 58.53813 * 13 11 2 27 27 H 1.08999 * 109.47360 * 60.67352 * 14 13 11 28 28 H 1.08999 * 109.47922 * 180.68271 * 14 13 11 29 29 H 1.09004 * 113.63267 * 204.19498 * 17 16 15 30 30 H 1.08998 * 113.63382 * 335.15271 * 17 16 15 31 31 H 1.09000 * 113.60541 * 270.59086 * 18 17 16 32 32 H 1.09004 * 113.60334 * 139.72108 * 18 17 16 33 33 H 1.09003 * 113.63238 * 25.03642 * 19 16 15 34 34 H 1.09003 * 113.62954 * 155.98580 * 19 16 15 35 35 H 1.08993 * 109.56913 * 294.01280 * 20 16 15 36 36 H 1.09002 * 109.56009 * 173.78209 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3384 0.4784 6 7 0.4047 2.2579 1.1367 7 14 2.3367 4.0036 0.1878 8 1 3.5995 3.8232 -0.5726 9 1 1.4103 4.8656 -0.5892 10 1 2.6322 4.6457 1.4938 11 6 2.1975 -1.2686 -0.0006 12 1 3.2694 -1.0711 0.0031 13 6 1.8215 -2.0806 1.2424 14 6 2.5613 -3.4202 1.2178 15 8 2.2038 -4.1401 0.0346 16 6 2.4991 -3.4448 -1.1776 17 6 3.9948 -3.4116 -1.5175 18 6 3.7673 -4.7280 -2.2803 19 6 2.3008 -4.2919 -2.4409 20 6 1.8284 -2.0738 -1.2522 21 1 -0.3633 0.0760 1.0248 22 1 -0.3633 0.8496 -0.5782 23 1 -0.3634 -0.9255 -0.4466 24 1 -0.0201 3.0633 1.4714 25 1 2.1031 -1.5263 2.1376 26 1 0.7463 -2.2593 1.2484 27 1 3.6366 -3.2416 1.2236 28 1 2.2852 -4.0040 2.0959 29 1 4.2785 -2.5779 -2.1598 30 1 4.6430 -3.5170 -0.6476 31 1 3.8932 -5.6176 -1.6630 32 1 4.3113 -4.7857 -3.2232 33 1 1.5866 -5.1056 -2.3137 34 1 2.1162 -3.7015 -3.3383 35 1 0.7467 -2.1986 -1.3000 36 1 2.1746 -1.5460 -2.1408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086903992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = -22.996949 kcal Electronic energy + Delta-G solvation = -16555.184109 eV Core-core repulsion = 14039.929158 eV Total energy + Delta-G solvation = -2515.254951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39043 -38.00587 -36.71459 -34.26103 -31.68721 -30.46757 -28.08254 -26.65600 -26.05887 -24.15987 -23.52587 -20.81850 -19.87479 -18.80408 -17.34949 -16.98463 -16.59778 -16.03507 -15.49253 -15.36987 -15.03357 -14.67967 -14.48417 -14.02848 -13.66699 -13.20479 -12.89952 -12.85071 -12.56781 -12.51992 -12.22371 -12.10991 -11.99500 -11.77879 -11.65204 -11.60997 -11.41304 -10.81237 -10.62747 -10.21219 -8.78092 -7.83857 -5.33346 1.44433 1.45390 1.56108 2.48510 2.74851 3.28979 3.54490 3.65771 3.77687 3.95901 4.01041 4.06535 4.25589 4.39280 4.46701 4.55057 4.61989 4.79952 4.83321 4.85689 4.90398 4.98651 5.04885 5.09606 5.12366 5.21615 5.35278 5.40193 5.47691 5.52288 5.61955 5.67816 6.31621 6.38407 7.13563 7.85793 8.31482 9.19540 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041600 B = 0.007536 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.916620 B = 3714.844147 C = 3933.156218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.612 5.612 3 C -0.263 4.263 4 H 0.071 0.929 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.174 3.826 12 H 0.056 0.944 13 C -0.159 4.159 14 C 0.072 3.928 15 O -0.371 6.371 16 C 0.086 3.914 17 C -0.163 4.163 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.134 4.134 21 H 0.001 0.999 22 H 0.014 0.986 23 H 0.024 0.976 24 H 0.248 0.752 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -12.904 -5.210 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.199 4.199 14 C -0.005 4.005 15 O -0.290 6.290 16 C 0.046 3.954 17 C -0.201 4.201 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.173 4.173 21 H 0.019 0.981 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.747 -12.948 -5.152 15.074 hybrid contribution -0.061 1.670 0.376 1.713 sum 5.686 -11.278 -4.776 13.503 Atomic orbital electron populations 1.20417 0.83216 0.95431 0.97193 1.44189 1.01867 1.01337 1.85997 1.19617 0.98712 0.86853 1.34137 0.91173 1.25834 0.98581 1.02007 0.98525 1.70247 1.20275 1.27597 1.40658 0.85161 0.78083 0.79876 0.77088 1.18929 1.21797 1.21854 1.20518 0.95045 0.84883 0.92809 0.92578 1.22598 1.00522 0.97037 0.99754 1.22582 0.98352 0.91791 0.87736 1.87843 1.84359 1.43310 1.13461 1.22454 0.95501 0.91233 0.86249 1.23480 0.95936 0.99500 1.01171 1.22734 0.95572 0.96744 1.00829 1.22995 0.98392 0.99366 0.95199 1.22413 1.00449 0.95282 0.99181 0.98113 0.96691 0.95738 0.94306 0.92833 0.93209 0.92360 0.87293 0.89242 0.91266 0.89797 0.89642 0.90618 0.88034 0.92908 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.47 7.98 127.77 1.02 10.48 16 2 N -0.61 -31.54 2.82 -701.89 -1.98 -33.52 16 3 C -0.26 -14.73 9.59 84.03 0.81 -13.93 16 4 H 0.07 3.80 7.82 -2.91 -0.02 3.78 16 5 C -0.05 -3.12 5.12 84.86 0.43 -2.69 16 6 N -0.94 -56.97 10.66 21.65 0.23 -56.73 16 7 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 8 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 11 C 0.17 7.26 2.60 45.15 0.12 7.37 16 12 H 0.06 2.36 7.84 -2.39 -0.02 2.35 16 13 C -0.16 -6.06 5.39 30.66 0.17 -5.89 16 14 C 0.07 2.15 6.73 72.00 0.48 2.63 16 15 O -0.37 -11.50 10.47 -148.98 -1.56 -13.06 16 16 C 0.09 2.49 1.03 -10.59 -0.01 2.48 16 17 C -0.16 -4.04 7.12 31.02 0.22 -3.82 16 18 C -0.12 -2.46 8.02 31.16 0.25 -2.21 16 19 C -0.12 -2.83 7.47 31.01 0.23 -2.60 16 20 C -0.13 -4.74 4.61 30.64 0.14 -4.60 16 21 H 0.00 0.03 7.39 -2.39 -0.02 0.02 16 22 H 0.01 0.81 7.27 -2.38 -0.02 0.80 16 23 H 0.02 1.11 6.37 -2.39 -0.02 1.10 16 24 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 2.01 7.63 -2.39 -0.02 1.99 16 27 H 0.06 1.60 7.22 -2.39 -0.02 1.58 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.09 2.19 8.02 -2.38 -0.02 2.17 16 30 H 0.07 1.70 7.27 -2.39 -0.02 1.68 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.05 1.99 6.51 -2.39 -0.02 1.97 16 36 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 Total: -1.00 -63.75 278.99 3.61 -60.14 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.04 Total: 8.29 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 3.86 Total: -12.76 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.75 Total: -90.26 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.56 Total: -13.06 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -63.75 3.61 -60.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086903992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.140 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds