Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.40628 * 2 1 4 4 C 1.53069 * 109.40056 * 119.74344 * 2 1 3 5 5 C 1.53351 * 108.42324 * 169.02770 * 4 2 1 6 6 C 1.53101 * 108.52936 * 292.30706 * 5 4 2 7 7 N 1.45749 * 110.38381 * 51.11929 * 6 5 4 8 8 C 1.46500 * 117.94701 * 160.73931 * 7 6 5 9 9 C 1.52997 * 109.47473 * 269.73766 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00636 * 15 13 11 17 17 H 1.48494 * 109.47178 * 210.00332 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00579 * 15 13 11 19 19 C 1.33355 * 124.10895 * 340.46260 * 7 6 5 20 20 O 1.21283 * 118.25018 * 182.52992 * 19 7 6 21 21 H 1.09004 * 109.46997 * 179.82639 * 1 2 3 22 22 H 1.08996 * 109.47043 * 299.82714 * 1 2 3 23 23 H 1.09002 * 109.47245 * 59.83142 * 1 2 3 24 24 H 1.08994 * 109.67461 * 288.75882 * 4 2 1 25 25 H 1.09003 * 109.67400 * 49.26554 * 4 2 1 26 26 H 1.08996 * 109.60407 * 52.22813 * 5 4 2 27 27 H 1.09005 * 109.59781 * 172.54618 * 5 4 2 28 28 H 1.08999 * 109.50140 * 290.73913 * 6 5 4 29 29 H 1.09003 * 109.20072 * 171.30100 * 6 5 4 30 30 H 1.09002 * 109.47129 * 149.73509 * 8 7 6 31 31 H 1.08998 * 109.46845 * 29.74315 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 33 33 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 35 35 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 36 36 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0384 -0.7163 1.2536 5 6 3.5466 -0.9481 1.1011 6 6 3.7716 -1.9645 -0.0215 7 7 3.0492 -1.5631 -1.2220 8 6 3.4665 -2.1437 -2.5007 9 6 4.5326 -1.2529 -3.1416 10 6 4.9679 -1.8590 -4.4774 11 6 6.0175 -0.9813 -5.1089 12 1 6.3420 -0.0814 -4.6075 13 6 6.5643 -1.3276 -6.3264 14 7 6.1696 -2.4236 -6.9367 15 14 7.8649 -0.2392 -7.1096 16 1 9.2115 -0.6760 -6.6609 17 1 7.7764 -0.3477 -8.5879 18 1 7.6408 1.1712 -6.7024 19 6 2.0289 -0.7046 -1.2289 20 8 1.4737 -0.4811 -2.2838 21 1 -0.3633 -1.0277 -0.0031 22 1 -0.3633 0.5111 0.8915 23 1 -0.3634 0.5165 -0.8885 24 1 1.8490 -0.0986 2.1314 25 1 1.5285 -1.6737 1.3614 26 1 4.0378 -0.0076 0.8518 27 1 3.9530 -1.3366 2.0350 28 1 3.4201 -2.9451 0.2996 29 1 4.8370 -2.0224 -0.2445 30 1 2.6055 -2.2155 -3.1653 31 1 3.8783 -3.1385 -2.3309 32 1 5.3936 -1.1811 -2.4770 33 1 4.1207 -0.2582 -3.3115 34 1 5.3796 -2.8539 -4.3079 35 1 4.1068 -1.9305 -5.1417 36 1 6.5545 -2.6674 -7.7930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133764779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -64.110747 kcal Electronic energy + Delta-G solvation = -15729.733607 eV Core-core repulsion = 13212.695828 eV Total energy + Delta-G solvation = -2517.037779 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41134 -36.31117 -35.50185 -33.43311 -31.58030 -30.40555 -26.80773 -26.73681 -23.89185 -22.48251 -21.92834 -20.12546 -18.53774 -16.58502 -16.46637 -15.95736 -15.01999 -14.65729 -14.45324 -14.10737 -13.71138 -13.43218 -13.16374 -12.71707 -12.31534 -12.05225 -11.93372 -11.44079 -11.35665 -11.17591 -11.07916 -10.83376 -10.73856 -10.64830 -10.54424 -9.63356 -9.60305 -9.19476 -9.10690 -8.30439 -8.27335 -5.95474 -3.97477 2.93708 3.27055 3.34712 3.40798 3.45145 4.49625 4.50696 4.59195 4.63135 4.72452 5.19366 5.26914 5.35051 5.40216 5.46947 5.56614 5.59318 5.69284 5.73555 5.87072 5.88951 6.00921 6.10722 6.17034 6.28956 6.49620 6.71705 7.03767 7.16405 7.71596 7.75940 7.89105 8.04460 8.45839 8.50985 9.09044 9.66070 11.15972 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045289 B = 0.005368 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.099741 B = 5214.647954 C = 5361.033828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.118 4.118 5 C -0.137 4.137 6 C 0.112 3.888 7 N -0.601 5.601 8 C 0.104 3.896 9 C -0.119 4.119 10 C 0.024 3.976 11 C -0.518 4.518 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.513 3.487 20 O -0.548 6.548 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 1.576 18.549 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.118 0.882 4 C -0.156 4.156 5 C -0.174 4.174 6 C -0.011 4.011 7 N -0.334 5.334 8 C -0.017 4.017 9 C -0.157 4.157 10 C -0.014 4.014 11 C -0.556 4.556 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.300 3.700 20 O -0.425 6.425 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.490 1.587 17.855 19.427 hybrid contribution 0.927 0.505 -0.458 1.151 sum -6.562 2.092 17.398 18.711 Atomic orbital electron populations 1.21641 0.92584 1.02413 1.02505 1.21224 0.97917 1.00676 0.92928 0.88205 1.21742 0.95634 1.01081 0.97114 1.21920 0.96699 1.00190 0.98637 1.21404 0.97532 0.97459 0.84735 1.47463 1.32570 1.44316 1.09007 1.21819 0.99541 0.96637 0.83725 1.21912 0.95840 0.98902 0.99055 1.19037 0.96268 0.95949 0.90141 1.21232 1.21594 1.08448 1.04354 0.92823 1.25019 0.97015 0.95269 0.97163 1.69964 1.43196 1.24076 1.16308 0.86596 0.81926 0.81021 0.78473 1.20702 1.21198 1.19915 1.20010 0.79687 0.79581 0.90708 1.90716 1.56617 1.63054 1.32161 0.92598 0.92039 0.91235 0.90850 0.91194 0.90856 0.89963 0.91972 0.90365 0.89849 0.91166 0.93596 0.93075 0.96610 0.96352 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.88 37.15 0.33 -1.09 16 2 C -0.11 -1.24 2.95 -91.99 -0.27 -1.51 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.12 -1.02 5.33 -26.51 -0.14 -1.16 16 5 C -0.14 -1.20 6.03 -26.50 -0.16 -1.36 16 6 C 0.11 1.27 6.32 -4.39 -0.03 1.24 16 7 N -0.60 -9.40 2.81 -174.85 -0.49 -9.89 16 8 C 0.10 1.94 5.22 -4.04 -0.02 1.92 16 9 C -0.12 -2.61 5.47 -26.73 -0.15 -2.76 16 10 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 11 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 15 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.51 8.43 7.03 -11.87 -0.08 8.35 16 20 O -0.55 -11.45 15.39 5.56 0.09 -11.36 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.08 1.72 7.13 -51.93 -0.37 1.35 16 31 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -33.65 293.85 -7.56 -41.21 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -6.22 Total: -4.86 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.07 Total: -9.87 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.25 Total: -36.76 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.65 -7.56 -41.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133764779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.905 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds