Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.40628 * 2 1 4 4 C 1.53069 * 109.40056 * 119.74344 * 2 1 3 5 5 C 1.53351 * 108.42324 * 169.02770 * 4 2 1 6 6 C 1.53101 * 108.52936 * 292.30706 * 5 4 2 7 7 N 1.45749 * 110.38381 * 51.11929 * 6 5 4 8 8 C 1.46500 * 117.94701 * 160.73931 * 7 6 5 9 9 C 1.52997 * 109.47473 * 269.73766 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00636 * 15 13 11 17 17 H 1.48494 * 109.47178 * 210.00332 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00579 * 15 13 11 19 19 C 1.33355 * 124.10895 * 340.46260 * 7 6 5 20 20 O 1.21283 * 118.25018 * 182.52992 * 19 7 6 21 21 H 1.09004 * 109.46997 * 179.82639 * 1 2 3 22 22 H 1.08996 * 109.47043 * 299.82714 * 1 2 3 23 23 H 1.09002 * 109.47245 * 59.83142 * 1 2 3 24 24 H 1.08994 * 109.67461 * 288.75882 * 4 2 1 25 25 H 1.09003 * 109.67400 * 49.26554 * 4 2 1 26 26 H 1.08996 * 109.60407 * 52.22813 * 5 4 2 27 27 H 1.09005 * 109.59781 * 172.54618 * 5 4 2 28 28 H 1.08999 * 109.50140 * 290.73913 * 6 5 4 29 29 H 1.09003 * 109.20072 * 171.30100 * 6 5 4 30 30 H 1.09002 * 109.47129 * 149.73509 * 8 7 6 31 31 H 1.08998 * 109.46845 * 29.74315 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 33 33 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 35 35 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 36 36 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0384 -0.7163 1.2536 5 6 3.5466 -0.9481 1.1011 6 6 3.7716 -1.9645 -0.0215 7 7 3.0492 -1.5631 -1.2220 8 6 3.4665 -2.1437 -2.5007 9 6 4.5326 -1.2529 -3.1416 10 6 4.9679 -1.8590 -4.4774 11 6 6.0175 -0.9813 -5.1089 12 1 6.3420 -0.0814 -4.6075 13 6 6.5643 -1.3276 -6.3264 14 7 6.1696 -2.4236 -6.9367 15 14 7.8649 -0.2392 -7.1096 16 1 9.2115 -0.6760 -6.6609 17 1 7.7764 -0.3477 -8.5879 18 1 7.6408 1.1712 -6.7024 19 6 2.0289 -0.7046 -1.2289 20 8 1.4737 -0.4811 -2.2838 21 1 -0.3633 -1.0277 -0.0031 22 1 -0.3633 0.5111 0.8915 23 1 -0.3634 0.5165 -0.8885 24 1 1.8490 -0.0986 2.1314 25 1 1.5285 -1.6737 1.3614 26 1 4.0378 -0.0076 0.8518 27 1 3.9530 -1.3366 2.0350 28 1 3.4201 -2.9451 0.2996 29 1 4.8370 -2.0224 -0.2445 30 1 2.6055 -2.2155 -3.1653 31 1 3.8783 -3.1385 -2.3309 32 1 5.3936 -1.1811 -2.4770 33 1 4.1207 -0.2582 -3.3115 34 1 5.3796 -2.8539 -4.3079 35 1 4.1068 -1.9305 -5.1417 36 1 6.5545 -2.6674 -7.7930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133764779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -85.338481 kcal Electronic energy + Delta-G solvation = -15730.654110 eV Core-core repulsion = 13212.695828 eV Total energy + Delta-G solvation = -2517.958282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61351 -37.53929 -36.85298 -35.31657 -33.29901 -31.62437 -28.66426 -27.63676 -25.60579 -23.56356 -23.14729 -21.95154 -19.58832 -18.56113 -17.66253 -17.45424 -16.52444 -16.23161 -15.65580 -15.48030 -15.11718 -14.51989 -14.31406 -13.99614 -13.88640 -13.62371 -13.19654 -12.92576 -12.74749 -12.62712 -12.50044 -12.28684 -12.13589 -11.83400 -11.63880 -11.57666 -11.46126 -11.31027 -10.58660 -10.54006 -9.64685 -8.22800 -6.34848 1.37194 1.39802 1.50857 1.66865 2.06773 2.39317 3.09747 3.55591 3.83269 3.84430 3.91670 4.11776 4.23459 4.43867 4.48321 4.53052 4.57115 4.64886 4.80535 4.84501 4.89314 4.96928 5.04765 5.12674 5.12987 5.16428 5.28091 5.40074 5.42502 5.55186 5.66716 5.79498 6.20638 6.56096 6.80392 7.23094 7.34295 8.89124 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045289 B = 0.005368 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.099741 B = 5214.647954 C = 5361.033828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.107 0.893 4 C -0.110 4.110 5 C -0.131 4.131 6 C 0.100 3.900 7 N -0.600 5.600 8 C 0.114 3.886 9 C -0.099 4.099 10 C 0.028 3.972 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.500 3.500 20 O -0.606 6.606 21 H 0.052 0.948 22 H 0.095 0.905 23 H 0.042 0.958 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.004 0.996 35 H -0.016 1.016 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 2.193 21.122 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.125 0.875 4 C -0.148 4.148 5 C -0.169 4.169 6 C -0.021 4.021 7 N -0.331 5.331 8 C -0.010 4.010 9 C -0.138 4.138 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.074 0.926 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.192 1.192 19 C 0.290 3.710 20 O -0.488 6.488 21 H 0.071 0.929 22 H 0.114 0.886 23 H 0.062 0.938 24 H 0.123 0.877 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.002 0.998 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.516 2.194 20.483 21.607 hybrid contribution 0.612 0.272 -1.270 1.436 sum -5.905 2.466 19.213 20.251 Atomic orbital electron populations 1.21641 0.91941 1.02362 1.02899 1.21318 0.98397 1.00628 0.91964 0.87527 1.21758 0.95269 1.01562 0.96171 1.21951 0.96971 0.99169 0.98759 1.21798 0.97060 0.99498 0.83777 1.47577 1.32599 1.43762 1.09121 1.21452 0.97346 0.97016 0.85146 1.21628 0.97201 0.97810 0.97118 1.18920 0.94529 0.95517 0.91991 1.21637 1.22511 1.08988 1.05297 0.92611 1.26003 0.99391 0.96744 0.97623 1.70094 1.44497 1.25804 1.16825 0.85408 0.79020 0.78971 0.77410 1.19102 1.20549 1.19169 1.21079 0.79115 0.79092 0.91729 1.90687 1.58498 1.64895 1.34693 0.92894 0.88578 0.93846 0.87676 0.90577 0.91486 0.86536 0.89878 0.90369 0.92726 0.89086 0.92117 0.95435 0.97784 0.99794 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.88 71.98 0.64 -1.97 16 2 C -0.10 -2.21 2.95 -11.68 -0.03 -2.24 16 3 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.11 -1.47 5.33 30.74 0.16 -1.30 16 5 C -0.13 -1.79 6.03 30.75 0.19 -1.61 16 6 C 0.10 2.02 6.32 86.55 0.55 2.57 16 7 N -0.60 -18.51 2.81 -826.29 -2.32 -20.83 16 8 C 0.11 4.35 5.22 86.38 0.45 4.80 16 9 C -0.10 -4.50 5.47 30.59 0.17 -4.33 16 10 C 0.03 1.58 4.97 29.85 0.15 1.73 16 11 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 0.01 5.46 84.66 0.46 0.48 16 14 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 15 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 C 0.50 16.57 7.03 87.72 0.62 17.19 16 20 O -0.61 -26.68 15.39 -3.04 -0.05 -26.72 16 21 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 22 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.08 7.80 -2.39 -0.02 1.06 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 27 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.59 8.10 -2.39 -0.02 1.58 16 30 H 0.05 2.40 7.13 -2.39 -0.02 2.38 16 31 H 0.09 3.07 8.01 -2.39 -0.02 3.05 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.25 293.85 4.54 -71.71 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.02 Total: 3.63 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.58 Total: -17.29 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.04 Total: -79.03 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.25 4.54 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133764779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -76.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds