Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.48531 * 111.00304 * 175.40443 * 12 2 1 14 14 C 1.54313 * 104.67213 * 200.80438 * 13 12 2 15 15 H 1.08996 * 112.55468 * 262.01475 * 14 13 12 16 16 C 1.56244 * 109.01979 * 136.38986 * 14 13 12 17 17 C 1.54843 * 104.37541 * 223.49359 * 16 14 13 18 18 C 1.54850 * 102.72932 * 38.63012 * 17 16 14 19 19 H 1.09009 * 110.46041 * 203.10696 * 18 17 16 20 20 O 1.42902 * 110.46378 * 80.53016 * 18 17 16 21 21 C 1.54159 * 104.32608 * 321.81406 * 18 17 16 22 22 H 1.08996 * 111.79784 * 260.36691 * 21 18 17 23 23 C 1.48528 * 110.99960 * 59.99644 * 12 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08998 * 110.39238 * 319.60865 * 13 12 2 29 29 H 1.09001 * 110.39207 * 82.00433 * 13 12 2 30 30 H 1.09004 * 110.06254 * 104.95382 * 16 14 13 31 31 H 1.08999 * 110.92900 * 342.46423 * 16 14 13 32 32 H 1.08998 * 110.75961 * 280.31818 * 17 16 14 33 33 H 1.09000 * 110.92186 * 157.01081 * 17 16 14 34 34 H 0.96699 * 113.99847 * 65.09822 * 20 18 17 35 35 H 1.09001 * 110.39672 * 277.99452 * 23 12 2 36 36 H 1.08997 * 110.39640 * 40.28060 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 3.5003 -0.6167 -1.2907 14 6 3.8141 -0.8780 -2.7788 15 1 4.0971 -1.9129 -2.9710 16 6 4.9001 0.1388 -3.2563 17 6 4.3988 0.6141 -4.6422 18 6 2.8682 0.7208 -4.4332 19 1 2.3472 0.6465 -5.3878 20 8 2.5379 1.9461 -3.7764 21 6 2.5210 -0.4829 -3.5348 22 1 2.1170 -1.3150 -4.1113 23 6 1.5434 -0.0188 -2.4346 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 3.8488 0.3734 -0.9970 29 1 3.9589 -1.3828 -0.6655 30 1 5.8643 -0.3608 -3.3507 31 1 4.9741 0.9811 -2.5685 32 1 4.6334 -0.1220 -5.4111 33 1 4.8225 1.5854 -4.8972 34 1 2.7354 2.7369 -4.2967 35 1 0.5273 -0.3343 -2.6717 36 1 1.5866 1.0640 -2.3176 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156457051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = -47.691563 kcal Electronic energy + Delta-G solvation = -16520.079462 eV Core-core repulsion = 14003.753673 eV Total energy + Delta-G solvation = -2516.325790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66858 -36.39478 -34.40574 -32.56140 -29.95193 -29.36967 -26.73399 -25.58736 -24.26585 -21.56482 -20.77563 -19.20978 -18.48351 -17.10753 -16.26755 -15.69764 -15.25665 -14.66785 -14.08430 -13.27087 -12.99747 -12.77987 -12.60298 -12.08411 -12.03639 -11.54463 -11.20072 -11.04479 -10.89194 -10.63359 -10.51668 -10.31394 -10.23631 -10.14174 -9.95390 -9.82246 -9.69986 -9.54336 -8.76897 -8.34322 -7.11998 -5.92541 -3.96449 3.34383 3.41755 3.46904 4.32139 4.47977 4.62949 4.75049 5.04008 5.36557 5.41393 5.52632 5.54409 5.60267 5.71513 5.75082 5.93033 5.98979 6.00623 6.20652 6.35726 6.49568 6.65246 6.79080 6.82134 6.92939 6.97601 7.16930 7.21295 7.61362 7.73337 7.85158 7.92760 8.27485 8.43979 8.68639 9.11001 9.68187 11.14433 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.007702 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.816812 B = 3634.616885 C = 3936.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.203 3.797 3 H 0.000 1.000 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.508 5.508 13 C 0.058 3.942 14 C -0.094 4.094 15 H 0.080 0.920 16 C -0.115 4.115 17 C -0.154 4.154 18 C 0.102 3.898 19 H 0.054 0.946 20 O -0.548 6.548 21 C -0.090 4.090 22 H 0.083 0.917 23 C 0.038 3.962 24 H 0.084 0.916 25 H 0.032 0.968 26 H 0.007 0.993 27 H 0.258 0.742 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.366 0.634 35 H 0.061 0.939 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 0.412 -13.805 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.097 3.903 3 H 0.017 0.983 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.233 5.233 13 C -0.071 4.071 14 C -0.113 4.113 15 H 0.098 0.902 16 C -0.152 4.152 17 C -0.192 4.192 18 C 0.043 3.957 19 H 0.072 0.928 20 O -0.353 6.353 21 C -0.109 4.109 22 H 0.101 0.899 23 C -0.090 4.090 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.213 0.787 35 H 0.079 0.921 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.812 -0.440 -13.116 13.978 hybrid contribution 0.728 0.793 0.392 1.146 sum 5.540 0.353 -12.724 13.882 Atomic orbital electron populations 1.21791 0.97835 0.99421 0.99893 1.19385 0.92374 0.92063 0.86510 0.98252 1.21176 1.30579 1.12070 0.89827 0.92108 1.24943 0.95349 0.95129 0.98981 1.69913 1.37250 1.23150 1.23115 0.86487 0.78561 0.79621 0.83013 1.19786 1.21213 1.21086 1.65499 1.04848 1.50635 1.02271 1.22898 0.91107 0.99982 0.93083 1.22934 0.93680 0.98303 0.96379 0.90167 1.22789 0.97741 0.98745 0.95967 1.23165 0.96687 1.01146 0.98169 1.22450 0.93318 0.85834 0.94145 0.92801 1.86682 1.86865 1.15093 1.46701 1.22585 0.96928 0.94974 0.96423 0.89865 1.22951 0.96952 0.98791 0.90326 0.89787 0.94901 0.97402 0.93165 0.94346 0.91127 0.92266 0.91074 0.91057 0.91686 0.78689 0.92071 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.82 37.16 0.33 -3.09 16 2 C 0.20 5.46 1.83 -68.86 -0.13 5.34 16 3 H 0.00 0.00 7.97 -51.93 -0.41 -0.42 16 4 C -0.50 -14.29 8.16 -34.44 -0.28 -14.57 16 5 H 0.06 1.75 7.24 -52.49 -0.38 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -26.44 11.32 55.43 0.63 -25.81 16 8 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.51 -11.76 5.19 -223.54 -1.16 -12.92 16 13 C 0.06 1.20 5.37 -2.23 -0.01 1.18 16 14 C -0.09 -1.52 4.04 -87.19 -0.35 -1.87 16 15 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.11 -1.57 6.38 -24.02 -0.15 -1.72 16 17 C -0.15 -1.74 6.62 -24.78 -0.16 -1.91 16 18 C 0.10 1.33 4.12 -25.15 -0.10 1.23 16 19 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 20 O -0.55 -7.86 10.89 -35.23 -0.38 -8.25 16 21 C -0.09 -1.43 3.87 -88.32 -0.34 -1.77 16 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 23 C 0.04 0.76 4.73 -2.23 -0.01 0.75 16 24 H 0.08 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.01 0.17 6.94 -51.93 -0.36 -0.19 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.04 0.85 6.99 -51.93 -0.36 0.49 16 29 H 0.07 1.51 7.63 -51.93 -0.40 1.11 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.09 7.26 -51.93 -0.38 0.71 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.37 3.47 9.12 45.56 0.42 3.88 16 35 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 36 H 0.07 1.42 5.65 -51.93 -0.29 1.12 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -31.20 275.34 -8.07 -39.28 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.98 Total: 1.49 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.31 Total: -14.91 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.53 Total: -38.73 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.38 Total: -8.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.20 -8.07 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156457051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.414 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds