Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.48531 * 111.00304 * 175.40443 * 12 2 1 14 14 C 1.54313 * 104.67213 * 200.80438 * 13 12 2 15 15 H 1.08996 * 112.55468 * 262.01475 * 14 13 12 16 16 C 1.56244 * 109.01979 * 136.38986 * 14 13 12 17 17 C 1.54843 * 104.37541 * 223.49359 * 16 14 13 18 18 C 1.54850 * 102.72932 * 38.63012 * 17 16 14 19 19 H 1.09009 * 110.46041 * 203.10696 * 18 17 16 20 20 O 1.42902 * 110.46378 * 80.53016 * 18 17 16 21 21 C 1.54159 * 104.32608 * 321.81406 * 18 17 16 22 22 H 1.08996 * 111.79784 * 260.36691 * 21 18 17 23 23 C 1.48528 * 110.99960 * 59.99644 * 12 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08998 * 110.39238 * 319.60865 * 13 12 2 29 29 H 1.09001 * 110.39207 * 82.00433 * 13 12 2 30 30 H 1.09004 * 110.06254 * 104.95382 * 16 14 13 31 31 H 1.08999 * 110.92900 * 342.46423 * 16 14 13 32 32 H 1.08998 * 110.75961 * 280.31818 * 17 16 14 33 33 H 1.09000 * 110.92186 * 157.01081 * 17 16 14 34 34 H 0.96699 * 113.99847 * 65.09822 * 20 18 17 35 35 H 1.09001 * 110.39672 * 277.99452 * 23 12 2 36 36 H 1.08997 * 110.39640 * 40.28060 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 3.5003 -0.6167 -1.2907 14 6 3.8141 -0.8780 -2.7788 15 1 4.0971 -1.9129 -2.9710 16 6 4.9001 0.1388 -3.2563 17 6 4.3988 0.6141 -4.6422 18 6 2.8682 0.7208 -4.4332 19 1 2.3472 0.6465 -5.3878 20 8 2.5379 1.9461 -3.7764 21 6 2.5210 -0.4829 -3.5348 22 1 2.1170 -1.3150 -4.1113 23 6 1.5434 -0.0188 -2.4346 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 3.8488 0.3734 -0.9970 29 1 3.9589 -1.3828 -0.6655 30 1 5.8643 -0.3608 -3.3507 31 1 4.9741 0.9811 -2.5685 32 1 4.6334 -0.1220 -5.4111 33 1 4.8225 1.5854 -4.8972 34 1 2.7354 2.7369 -4.2967 35 1 0.5273 -0.3343 -2.6717 36 1 1.5866 1.0640 -2.3176 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156457051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = -71.038994 kcal Electronic energy + Delta-G solvation = -16521.091883 eV Core-core repulsion = 14003.753673 eV Total energy + Delta-G solvation = -2517.338210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00015 -37.89381 -35.90728 -34.39784 -31.73358 -30.77639 -28.30350 -27.50863 -25.89129 -23.31249 -21.96384 -20.96950 -19.87463 -18.36623 -18.20758 -17.11135 -16.84729 -16.16766 -15.77018 -14.97836 -14.68798 -14.33262 -13.93831 -13.80298 -13.30422 -13.08298 -13.01315 -12.83361 -12.59726 -12.49638 -12.18777 -12.05172 -11.83823 -11.53556 -11.46850 -11.42823 -11.16606 -10.90661 -10.68973 -10.54952 -9.03497 -8.13441 -6.26300 1.38781 1.39659 1.52758 2.40485 3.13614 3.26440 3.49154 3.52721 3.87090 3.98589 4.31243 4.37986 4.43801 4.52404 4.58214 4.62270 4.76320 4.87890 4.96408 4.97002 4.98709 5.05159 5.13178 5.15629 5.20187 5.31186 5.41815 5.49443 5.52219 5.69859 5.73020 6.21311 6.34708 6.65028 6.88174 7.05129 7.43136 8.93214 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041980 B = 0.007702 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.816812 B = 3634.616885 C = 3936.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.210 3.790 3 H -0.045 1.045 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.519 5.519 13 C 0.057 3.943 14 C -0.089 4.089 15 H 0.098 0.902 16 C -0.114 4.114 17 C -0.141 4.141 18 C 0.102 3.898 19 H 0.083 0.917 20 O -0.579 6.579 21 C -0.089 4.089 22 H 0.104 0.896 23 C 0.036 3.964 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.012 0.988 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.387 0.613 35 H 0.059 0.941 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -0.495 -15.567 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H -0.027 1.027 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.243 5.243 13 C -0.072 4.072 14 C -0.107 4.107 15 H 0.117 0.883 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.043 3.957 19 H 0.101 0.899 20 O -0.388 6.388 21 C -0.108 4.108 22 H 0.123 0.877 23 C -0.092 4.092 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.077 0.923 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.829 -1.337 -14.907 16.062 hybrid contribution 0.393 1.114 0.941 1.510 sum 6.222 -0.223 -13.966 15.291 Atomic orbital electron populations 1.21604 0.97439 0.99075 0.99537 1.19152 0.92651 0.89818 0.88116 1.02710 1.21403 1.31052 1.12154 0.91102 0.92809 1.25794 0.95355 0.95810 1.02101 1.70042 1.37886 1.24262 1.24042 0.85411 0.78216 0.78548 0.78889 1.19192 1.20470 1.20226 1.65416 1.06450 1.50258 1.02151 1.22903 0.89554 0.97992 0.96722 1.22948 0.95066 1.00167 0.92568 0.88334 1.22754 0.97993 0.97343 0.97059 1.23133 0.94914 1.02844 0.96913 1.22545 0.94972 0.84105 0.94096 0.89883 1.86622 1.87299 1.16548 1.48308 1.22685 0.95236 0.97184 0.95655 0.87742 1.22957 0.98179 0.97540 0.90494 0.92111 0.94988 0.95706 0.92868 0.96999 0.92560 0.90179 0.93618 0.88426 0.89881 0.76329 0.92282 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.37 8.82 71.98 0.64 -5.73 16 2 C 0.21 11.80 1.83 44.17 0.08 11.88 16 3 H -0.04 -2.83 7.97 -2.39 -0.02 -2.85 16 4 C -0.52 -30.74 8.16 25.60 0.21 -30.53 16 5 H 0.05 3.18 7.24 -2.91 -0.02 3.16 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -55.93 11.32 21.45 0.24 -55.69 16 8 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 N -0.52 -24.65 5.19 -861.15 -4.47 -29.12 16 13 C 0.06 2.42 5.37 86.43 0.46 2.88 16 14 C -0.09 -2.72 4.04 -8.57 -0.03 -2.76 16 15 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.11 -2.86 6.38 32.35 0.21 -2.66 16 17 C -0.14 -2.61 6.62 31.86 0.21 -2.40 16 18 C 0.10 2.34 4.12 31.62 0.13 2.47 16 19 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 20 O -0.58 -15.86 10.89 -148.98 -1.62 -17.49 16 21 C -0.09 -2.63 3.87 -9.30 -0.04 -2.67 16 22 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 23 C 0.04 1.45 4.73 86.44 0.41 1.86 16 24 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 25 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.02 1.19 6.94 -2.38 -0.02 1.17 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.01 0.55 6.99 -2.39 -0.02 0.54 16 29 H 0.06 2.49 7.63 -2.39 -0.02 2.47 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.04 1.38 7.26 -2.39 -0.02 1.36 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.39 6.62 9.12 -74.06 -0.68 5.94 16 35 H 0.06 2.34 7.66 -2.39 -0.02 2.32 16 36 H 0.05 2.03 5.65 -2.39 -0.01 2.01 16 Total: -1.00 -69.85 275.34 -0.71 -70.56 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.38 Total: 10.79 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 2.72 Total: -26.75 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.22 Total: -84.81 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.62 Total: -17.49 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.85 -0.71 -70.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156457051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.478 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds