Wall clock time and date at job start Mon Mar 30 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46779 * 2 1 4 4 C 1.50702 * 109.47158 * 119.99949 * 2 1 3 5 5 H 1.08008 * 119.99710 * 119.99904 * 4 2 1 6 6 C 1.37878 * 120.00284 * 300.00297 * 4 2 1 7 7 N 1.31512 * 120.00086 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99566 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47186 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46684 * 210.00154 * 8 6 4 11 11 H 1.48496 * 109.47508 * 329.99919 * 8 6 4 12 12 N 1.46897 * 109.46990 * 239.99930 * 2 1 3 13 13 C 1.46895 * 111.00428 * 299.70168 * 12 2 1 14 14 C 1.46906 * 111.00003 * 175.74514 * 12 2 1 15 15 C 1.52957 * 109.41514 * 301.45701 * 14 12 2 16 16 C 1.53235 * 109.39689 * 176.22275 * 15 14 12 17 17 C 1.51268 * 108.48584 * 54.73391 * 16 15 14 18 18 O 1.20762 * 120.85000 * 128.58798 * 17 16 15 19 19 C 1.51266 * 118.29729 * 308.60905 * 17 16 15 20 20 C 1.52956 * 109.41516 * 181.16632 * 14 12 2 21 21 H 1.08995 * 109.47113 * 66.90327 * 1 2 3 22 22 H 1.08995 * 109.46982 * 306.90301 * 1 2 3 23 23 H 1.09004 * 109.46591 * 186.90139 * 1 2 3 24 24 H 0.96996 * 119.99740 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.47311 * 60.00019 * 13 12 2 26 26 H 1.09002 * 109.47389 * 179.97438 * 13 12 2 27 27 H 1.08997 * 109.47379 * 300.00095 * 13 12 2 28 28 H 1.09000 * 109.40789 * 61.31116 * 14 12 2 29 29 H 1.09008 * 109.47828 * 296.27134 * 15 14 12 30 30 H 1.09000 * 109.48541 * 56.30983 * 15 14 12 31 31 H 1.08997 * 109.69134 * 295.00925 * 16 15 14 32 32 H 1.09004 * 109.61826 * 174.40925 * 16 15 14 33 33 H 1.09002 * 109.62931 * 291.63110 * 19 17 16 34 34 H 1.09004 * 109.78648 * 171.15749 * 19 17 16 35 35 H 1.08998 * 109.48637 * 303.69274 * 20 14 12 36 36 H 1.09003 * 109.47708 * 63.72808 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0197 -0.6925 -1.1994 13 6 1.5545 -2.0855 -1.2299 14 6 3.4846 -0.6246 -1.2853 15 6 3.9250 0.8399 -1.3135 16 6 5.4557 0.9113 -1.3080 17 6 5.9787 0.0822 -2.4600 18 8 6.7705 0.5442 -3.2461 19 6 5.4841 -1.3402 -2.6025 20 6 3.9524 -1.3300 -2.5594 21 1 -0.3633 0.4031 -0.9452 22 1 -0.3633 0.6171 0.8217 23 1 -0.3633 -1.0203 0.1235 24 1 1.9032 -0.5281 4.4375 25 1 0.4647 -2.1047 -1.2357 26 1 1.9310 -2.5748 -2.1282 27 1 1.9224 -2.6108 -0.3485 28 1 3.9216 -1.1176 -0.4170 29 1 3.5409 1.3177 -2.2150 30 1 3.5348 1.3539 -0.4351 31 1 5.8384 0.5143 -0.3678 32 1 5.7742 1.9468 -1.4279 33 1 5.8694 -1.9457 -1.7822 34 1 5.8208 -1.7545 -3.5528 35 1 3.5817 -2.3550 -2.5645 36 1 3.5677 -0.7998 -3.4306 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157241066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:52 Heat of formation + Delta-G solvation = -35.281168 kcal Electronic energy + Delta-G solvation = -16505.729102 eV Core-core repulsion = 13989.941467 eV Total energy + Delta-G solvation = -2515.787634 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76837 -37.90156 -34.80539 -32.35964 -31.19045 -29.92047 -27.44440 -25.28532 -24.51323 -22.59243 -21.04046 -19.19768 -18.84487 -16.69898 -16.11758 -15.22513 -15.05808 -14.68974 -14.39970 -13.99771 -13.59147 -13.15768 -12.75547 -12.57481 -12.34334 -12.07528 -11.78640 -11.66007 -11.22827 -11.06864 -10.99154 -10.69301 -10.58276 -10.13357 -10.10492 -9.92134 -9.61739 -9.37609 -9.01049 -8.62927 -7.22684 -6.16600 -4.17082 2.11932 3.22271 3.32572 3.34479 4.29300 4.32957 4.73139 4.91443 5.11000 5.17407 5.27117 5.49875 5.55158 5.68685 5.78003 5.84531 6.09307 6.10030 6.13608 6.27328 6.28249 6.34190 6.43214 6.54944 6.55631 6.65375 6.78417 6.81491 7.03028 7.17770 7.51945 7.64636 8.04018 8.08785 8.40003 8.84662 9.47184 10.96237 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.008744 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.303357 B = 3201.450811 C = 3480.889543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.542 4.542 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.266 1.266 12 N -0.529 5.529 13 C 0.026 3.974 14 C 0.085 3.915 15 C -0.105 4.105 16 C -0.167 4.167 17 C 0.367 3.633 18 O -0.473 6.473 19 C -0.168 4.168 20 C -0.110 4.110 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.264 0.736 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 0.288 -9.057 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.062 3.938 3 H 0.061 0.939 4 C -0.581 4.581 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.536 5.536 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.191 1.191 12 N -0.253 5.253 13 C -0.123 4.123 14 C -0.023 4.023 15 C -0.143 4.143 16 C -0.206 4.206 17 C 0.244 3.756 18 O -0.348 6.348 19 C -0.206 4.206 20 C -0.148 4.148 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.415 0.771 -9.689 10.015 hybrid contribution -0.399 0.250 1.218 1.306 sum 2.015 1.020 -8.471 8.767 Atomic orbital electron populations 1.22153 0.98697 1.00773 0.98604 1.19787 0.91363 0.95287 0.87387 0.93877 1.21564 1.32707 1.14103 0.89710 0.90609 1.24962 0.95462 0.96552 0.95872 1.69907 1.45410 1.40248 0.97996 0.86865 0.80731 0.83775 0.76868 1.20652 1.22590 1.19073 1.62454 1.08091 1.14309 1.40434 1.22307 1.00358 0.90048 0.99564 1.21461 0.89781 0.94963 0.96142 1.21566 0.91645 0.97590 1.03506 1.22316 0.98446 1.00900 0.98909 1.25025 0.76825 0.90133 0.83631 1.90361 1.28464 1.74163 1.41829 1.22297 0.98324 0.95863 1.04128 1.21676 0.91924 1.01915 0.99254 0.94344 0.94388 0.92906 0.92657 0.92242 0.93317 0.94312 0.92291 0.91714 0.89510 0.88128 0.89737 0.88460 0.89808 0.90663 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.13 37.16 0.30 -2.74 16 2 C 0.17 3.72 1.65 -68.86 -0.11 3.60 16 3 H 0.04 0.98 5.02 -51.93 -0.26 0.72 16 4 C -0.54 -13.97 7.64 -34.44 -0.26 -14.23 16 5 H 0.08 2.13 6.06 -52.48 -0.32 1.81 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.28 13.96 55.43 0.77 -25.51 16 8 Si 0.89 21.14 24.30 -169.99 -4.13 17.01 16 9 H -0.28 -6.58 6.93 56.52 0.39 -6.19 16 10 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 12 N -0.53 -10.03 4.62 -228.35 -1.06 -11.09 16 13 C 0.03 0.46 8.57 60.06 0.51 0.97 16 14 C 0.09 1.45 1.57 -67.75 -0.11 1.34 16 15 C -0.11 -1.69 5.05 -26.63 -0.13 -1.82 16 16 C -0.17 -2.38 6.17 -27.48 -0.17 -2.54 16 17 C 0.37 5.36 6.72 -28.48 -0.19 5.17 16 18 O -0.47 -8.19 17.89 6.00 0.11 -8.09 16 19 C -0.17 -2.12 6.17 -27.49 -0.17 -2.29 16 20 C -0.11 -1.52 5.02 -26.64 -0.13 -1.65 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.83 3.49 -51.93 -0.18 0.64 16 23 H 0.05 1.10 6.79 -51.93 -0.35 0.74 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 26 H 0.05 0.73 5.95 -51.93 -0.31 0.42 16 27 H 0.04 0.77 6.45 -51.93 -0.33 0.44 16 28 H 0.06 1.14 6.77 -51.93 -0.35 0.79 16 29 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.09 1.56 6.09 -51.93 -0.32 1.24 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.99 6.07 -51.93 -0.32 0.67 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 267.94 15.07 4.04 4.04 Total: -1.00 -29.02 267.94 -6.04 -35.06 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.21 Total: 0.83 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.56 Total: -12.27 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.28 Total: -36.59 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.11 Total: -8.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.13 Total: 17.01 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.02 -6.04 -35.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157241066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.217 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds