Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00203 * 2 1 4 4 C 1.50701 * 109.46949 * 293.95449 * 3 2 1 5 5 H 1.08000 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99808 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00182 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99941 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46785 * 90.00321 * 8 6 4 10 10 H 1.48496 * 109.47201 * 210.00024 * 8 6 4 11 11 H 1.48501 * 109.47332 * 330.00797 * 8 6 4 12 12 C 1.46897 * 110.99959 * 123.95627 * 2 1 3 13 13 C 1.50698 * 109.47457 * 66.04769 * 12 2 1 14 14 O 1.20763 * 119.99849 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.54894 * 110.48422 * 93.23949 * 15 13 12 17 17 C 1.55238 * 102.58338 * 156.67616 * 16 15 13 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 1.08995 * 109.47036 * 296.04698 * 1 2 3 21 21 H 1.09002 * 109.47417 * 56.04596 * 1 2 3 22 22 H 1.08997 * 109.47026 * 176.04167 * 1 2 3 23 23 H 1.09001 * 109.47251 * 53.95203 * 3 2 1 24 24 H 1.09001 * 109.47204 * 173.95432 * 3 2 1 25 25 H 0.97001 * 120.00401 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47121 * 306.03989 * 12 2 1 27 27 H 1.09002 * 109.46996 * 186.04395 * 12 2 1 28 28 H 1.09002 * 110.43350 * 330.69728 * 15 13 12 29 29 H 1.08996 * 110.75388 * 275.05970 * 16 15 13 30 30 H 1.08993 * 110.76071 * 38.44196 * 16 15 13 31 31 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 32 32 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 33 33 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 34 34 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 35 35 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 36 36 H 1.08995 * 110.03881 * 119.28625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1868 -3.1383 9 1 0.2705 4.8668 -2.9970 10 1 2.6252 5.1883 -3.4790 11 1 1.5006 3.1710 -4.2184 12 6 1.9954 -0.7660 1.1375 13 6 1.6370 -2.2204 0.9728 14 8 1.0075 -2.5816 0.0076 15 6 2.0631 -3.2240 2.0131 16 6 0.9441 -3.4219 3.0657 17 6 1.2619 -4.8302 3.6364 18 6 1.7303 -5.6397 2.4096 19 6 2.2397 -4.6185 1.3775 20 1 -0.3633 0.4512 0.9232 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3444 0.1082 25 1 2.9867 4.9180 -0.7770 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 2.9874 -2.9042 2.4943 29 1 1.0087 -2.6629 3.8453 30 1 -0.0378 -3.4091 2.5928 31 1 0.3667 -5.2770 4.0692 32 1 2.0560 -4.7718 4.3809 33 1 0.8960 -6.2055 1.9949 34 1 2.5358 -6.3170 2.6937 35 1 1.6526 -4.6886 0.4618 36 1 3.2925 -4.7996 1.1612 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158215138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -47.130011 kcal Electronic energy + Delta-G solvation = -15598.994346 eV Core-core repulsion = 13082.692907 eV Total energy + Delta-G solvation = -2516.301439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81197 -37.20685 -35.76136 -32.49200 -30.12507 -28.78984 -27.83633 -26.83196 -24.21831 -21.79251 -20.65856 -20.08907 -18.84590 -16.65110 -16.15155 -15.72872 -14.95297 -14.79987 -14.41230 -13.98114 -13.73944 -13.47423 -13.09374 -12.49591 -12.10805 -11.85824 -11.48574 -11.32282 -11.21847 -11.14729 -10.97449 -10.85721 -10.80200 -10.70367 -10.51010 -10.45445 -9.96293 -9.37304 -8.83395 -8.42832 -7.22716 -6.01884 -4.02596 2.33458 3.33747 3.39567 3.45328 4.12399 4.45323 4.47094 4.53356 4.83438 5.12926 5.30450 5.32968 5.34393 5.36527 5.47833 5.54132 5.71094 5.75080 5.79248 5.82528 5.91605 6.01308 6.08191 6.18382 6.25685 6.31130 6.38655 6.86625 7.24949 7.31596 7.79556 7.93293 8.10244 8.20166 8.54738 9.05357 9.61535 11.09203 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.066343 B = 0.005022 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.947006 B = 5574.239100 C = 5684.237439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.005 3.995 13 C 0.361 3.639 14 O -0.434 6.434 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.119 4.119 20 H 0.006 0.994 21 H 0.074 0.926 22 H 0.059 0.941 23 H -0.008 1.008 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -15.206 9.047 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.124 4.124 13 C 0.235 3.765 14 O -0.305 6.305 15 C -0.163 4.163 16 C -0.147 4.147 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.156 4.156 20 H 0.024 0.976 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.010 0.990 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.446 -15.448 8.107 17.506 hybrid contribution -0.272 1.103 0.073 1.139 sum -1.717 -14.345 8.180 16.602 Atomic orbital electron populations 1.22342 0.88366 1.00729 1.00116 1.61982 1.07579 1.17573 1.38268 1.19789 0.95349 0.81334 0.96860 1.21169 1.34717 0.96875 1.01687 0.91751 1.24984 0.95275 0.97297 0.97065 1.69953 1.38479 1.11435 1.34162 0.86481 0.77964 0.79183 0.83726 1.20732 1.21241 1.19709 1.22506 1.02165 0.92760 0.95002 1.24627 0.76038 0.91277 0.84604 1.90310 1.29651 1.81660 1.28895 1.22593 1.00668 0.96017 0.97063 1.22479 0.97824 0.97364 0.97027 1.22414 1.00955 0.95078 0.97533 1.22122 1.00573 0.97829 0.95544 1.22142 1.01698 0.92335 0.99450 0.97599 0.90709 0.92249 0.99047 0.95184 0.92939 0.92725 0.88185 0.88525 0.90814 0.91081 0.91598 0.91438 0.91845 0.91902 0.90164 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.03 60.06 0.54 1.25 16 2 N -0.53 -12.11 4.49 -245.83 -1.10 -13.21 16 3 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 4 C -0.51 -14.61 8.46 -34.44 -0.29 -14.90 16 5 H 0.06 1.87 7.12 -52.49 -0.37 1.49 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.00 0.09 5.38 -4.98 -0.03 0.06 16 13 C 0.36 5.80 6.01 -29.04 -0.17 5.63 16 14 O -0.43 -8.36 13.64 6.00 0.08 -8.28 16 15 C -0.14 -1.70 3.18 -90.11 -0.29 -1.99 16 16 C -0.11 -1.13 6.34 -24.55 -0.16 -1.29 16 17 C -0.12 -1.05 6.84 -24.88 -0.17 -1.22 16 18 C -0.12 -1.13 6.80 -25.62 -0.17 -1.31 16 19 C -0.12 -1.35 6.33 -25.62 -0.16 -1.51 16 20 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 22 H 0.06 1.20 5.89 -51.93 -0.31 0.89 16 23 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 24 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 27 H 0.10 1.68 7.93 -51.93 -0.41 1.27 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.07 6.84 -51.93 -0.36 0.72 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -31.64 291.03 -7.93 -39.57 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.99 Total: -4.52 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.02 Total: -8.73 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.37 Total: -39.43 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.64 -7.93 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158215138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.561 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds