Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00203 * 2 1 4 4 C 1.50701 * 109.46949 * 293.95449 * 3 2 1 5 5 H 1.08000 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99808 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00182 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99941 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46785 * 90.00321 * 8 6 4 10 10 H 1.48496 * 109.47201 * 210.00024 * 8 6 4 11 11 H 1.48501 * 109.47332 * 330.00797 * 8 6 4 12 12 C 1.46897 * 110.99959 * 123.95627 * 2 1 3 13 13 C 1.50698 * 109.47457 * 66.04769 * 12 2 1 14 14 O 1.20763 * 119.99849 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.54894 * 110.48422 * 93.23949 * 15 13 12 17 17 C 1.55238 * 102.58338 * 156.67616 * 16 15 13 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 1.08995 * 109.47036 * 296.04698 * 1 2 3 21 21 H 1.09002 * 109.47417 * 56.04596 * 1 2 3 22 22 H 1.08997 * 109.47026 * 176.04167 * 1 2 3 23 23 H 1.09001 * 109.47251 * 53.95203 * 3 2 1 24 24 H 1.09001 * 109.47204 * 173.95432 * 3 2 1 25 25 H 0.97001 * 120.00401 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47121 * 306.03989 * 12 2 1 27 27 H 1.09002 * 109.46996 * 186.04395 * 12 2 1 28 28 H 1.09002 * 110.43350 * 330.69728 * 15 13 12 29 29 H 1.08996 * 110.75388 * 275.05970 * 16 15 13 30 30 H 1.08993 * 110.76071 * 38.44196 * 16 15 13 31 31 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 32 32 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 33 33 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 34 34 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 35 35 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 36 36 H 1.08995 * 110.03881 * 119.28625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1868 -3.1383 9 1 0.2705 4.8668 -2.9970 10 1 2.6252 5.1883 -3.4790 11 1 1.5006 3.1710 -4.2184 12 6 1.9954 -0.7660 1.1375 13 6 1.6370 -2.2204 0.9728 14 8 1.0075 -2.5816 0.0076 15 6 2.0631 -3.2240 2.0131 16 6 0.9441 -3.4219 3.0657 17 6 1.2619 -4.8302 3.6364 18 6 1.7303 -5.6397 2.4096 19 6 2.2397 -4.6185 1.3775 20 1 -0.3633 0.4512 0.9232 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3444 0.1082 25 1 2.9867 4.9180 -0.7770 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 2.9874 -2.9042 2.4943 29 1 1.0087 -2.6629 3.8453 30 1 -0.0378 -3.4091 2.5928 31 1 0.3667 -5.2770 4.0692 32 1 2.0560 -4.7718 4.3809 33 1 0.8960 -6.2055 1.9949 34 1 2.5358 -6.3170 2.6937 35 1 1.6526 -4.6886 0.4618 36 1 3.2925 -4.7996 1.1612 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158215138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -67.095863 kcal Electronic energy + Delta-G solvation = -15599.860130 eV Core-core repulsion = 13082.692907 eV Total energy + Delta-G solvation = -2517.167223 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07101 -38.34404 -37.39706 -34.65126 -31.31227 -29.64837 -29.48921 -28.49744 -26.11131 -23.26370 -21.86219 -21.22808 -20.00017 -18.56970 -17.61636 -16.81648 -16.58168 -16.34540 -15.89385 -15.59681 -15.19644 -14.52455 -14.30744 -14.19810 -13.71807 -13.34993 -13.06168 -12.80164 -12.65159 -12.60893 -12.39543 -12.07392 -12.03821 -11.98064 -11.94143 -11.63816 -11.44593 -11.26128 -10.63726 -10.29685 -9.04474 -8.22812 -6.32426 1.05151 1.39851 1.41114 1.53261 2.38834 2.87846 3.09736 3.46363 3.63142 3.70885 4.03414 4.32225 4.41599 4.48158 4.51439 4.55641 4.55791 4.62161 4.65998 4.70740 4.82770 4.96924 5.05804 5.10624 5.12897 5.22182 5.24654 5.28733 5.38472 5.49762 5.62165 6.00603 6.24845 6.49514 6.74493 6.82841 7.37021 8.88176 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.066343 B = 0.005022 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.947006 B = 5574.239100 C = 5684.237439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.548 5.548 3 C 0.207 3.793 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.269 1.269 12 C -0.003 4.003 13 C 0.369 3.631 14 O -0.472 6.472 15 C -0.137 4.137 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.121 4.121 20 H 0.014 0.986 21 H 0.054 0.946 22 H 0.071 0.929 23 H -0.030 1.030 24 H 0.012 0.988 25 H 0.266 0.734 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -16.070 9.853 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.272 5.272 3 C 0.081 3.919 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.194 1.194 12 C -0.132 4.132 13 C 0.245 3.755 14 O -0.346 6.346 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.159 4.159 20 H 0.033 0.967 21 H 0.073 0.927 22 H 0.090 0.910 23 H -0.012 1.012 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.311 -16.331 8.934 18.661 hybrid contribution -0.298 1.345 -0.141 1.385 sum -1.609 -14.986 8.794 17.450 Atomic orbital electron populations 1.22240 0.87693 1.01137 0.99627 1.61859 1.08368 1.15670 1.41323 1.19448 0.94031 0.83191 0.95229 1.21449 1.35133 0.97654 1.02498 0.92575 1.25855 0.94886 0.97840 1.00689 1.70056 1.39098 1.11926 1.36068 0.85402 0.78133 0.78059 0.79149 1.19691 1.20294 1.19397 1.22723 1.02773 0.93682 0.94012 1.24923 0.74785 0.90964 0.84848 1.90306 1.31600 1.81983 1.30700 1.22623 1.02179 0.94789 0.96053 1.22535 0.96312 0.99220 0.96727 1.22416 1.02039 0.93464 0.97427 1.22124 1.01074 0.97518 0.95112 1.22167 1.01946 0.92713 0.99055 0.96729 0.92730 0.91024 1.01248 0.97012 0.92518 0.90869 0.87221 0.86137 0.89399 0.92631 0.90516 0.89746 0.92082 0.90162 0.92814 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.79 9.03 127.69 1.15 2.94 16 2 N -0.55 -25.37 4.49 -931.66 -4.18 -29.55 16 3 C 0.21 11.27 4.72 85.56 0.40 11.67 16 4 C -0.53 -31.11 8.46 25.60 0.22 -30.89 16 5 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 8 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.00 -0.12 5.38 85.56 0.46 0.34 16 13 C 0.37 11.58 6.01 29.10 0.17 11.76 16 14 O -0.47 -18.28 13.64 -1.46 -0.02 -18.30 16 15 C -0.14 -2.97 3.18 -10.46 -0.03 -3.00 16 16 C -0.11 -2.02 6.34 32.01 0.20 -1.81 16 17 C -0.12 -1.62 6.84 31.79 0.22 -1.40 16 18 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 19 C -0.12 -2.56 6.33 31.32 0.20 -2.36 16 20 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 21 H 0.05 2.54 6.76 -2.39 -0.02 2.52 16 22 H 0.07 2.91 5.89 -2.39 -0.01 2.89 16 23 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 24 H 0.01 0.67 7.93 -2.39 -0.02 0.65 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 27 H 0.11 3.62 7.93 -2.39 -0.02 3.60 16 28 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.05 1.43 6.84 -2.39 -0.02 1.41 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.39 291.03 2.81 -65.58 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.03 Total: 4.55 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 3.67 Total: -13.67 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -3.90 Total: -85.41 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.02 Total: -18.30 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.39 2.81 -65.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158215138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.512 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds