Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49535 * 2 1 4 4 C 1.53038 * 109.49890 * 239.93553 * 2 1 3 5 5 C 1.53048 * 109.53573 * 301.41250 * 4 2 1 6 6 H 1.09000 * 109.49547 * 58.62131 * 5 4 2 7 7 C 1.53005 * 109.49427 * 178.68424 * 5 4 2 8 8 C 1.53183 * 109.31318 * 298.63555 * 5 4 2 9 9 H 1.09009 * 109.58669 * 294.84743 * 8 5 4 10 10 C 1.52997 * 109.58880 * 174.42505 * 8 5 4 11 11 N 1.46921 * 108.77840 * 54.63476 * 8 5 4 12 12 C 1.34775 * 120.63153 * 126.38833 * 11 8 5 13 13 O 1.21687 * 120.00271 * 355.07663 * 12 11 8 14 14 C 1.46375 * 119.99901 * 175.06833 * 12 11 8 15 15 H 1.07997 * 120.00318 * 336.02722 * 14 12 11 16 16 C 1.40055 * 119.99899 * 156.02980 * 14 12 11 17 17 N 1.30669 * 120.00001 * 182.93045 * 16 14 12 18 18 Si 1.86803 * 120.00068 * 2.92605 * 16 14 12 19 19 H 1.48505 * 109.46703 * 84.75939 * 18 16 14 20 20 H 1.48493 * 109.47196 * 204.76042 * 18 16 14 21 21 H 1.48503 * 109.47155 * 324.76249 * 18 16 14 22 22 C 1.46927 * 118.73882 * 306.39541 * 11 8 5 23 23 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46901 * 300.06529 * 1 2 3 25 25 H 1.08998 * 109.46876 * 60.06943 * 1 2 3 26 26 H 1.09000 * 109.46144 * 181.39785 * 4 2 1 27 27 H 1.09004 * 109.46222 * 61.43080 * 4 2 1 28 28 H 1.08999 * 109.47256 * 60.00047 * 7 5 4 29 29 H 1.09007 * 109.46956 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47169 * 299.99664 * 7 5 4 31 31 H 1.09003 * 109.47471 * 56.87349 * 10 8 5 32 32 H 1.08998 * 109.47371 * 176.87594 * 10 8 5 33 33 H 1.09000 * 109.47066 * 296.87323 * 10 8 5 34 34 H 0.96999 * 119.99916 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.58511 * 293.81799 * 22 11 8 36 36 H 1.08995 * 109.59085 * 173.39538 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5031 -2.1555 -1.2665 6 1 0.4133 -2.1351 -1.2552 7 6 1.9875 -2.8668 -2.5316 8 6 2.0140 -2.9040 -0.0316 9 1 3.0980 -3.0042 -0.0876 10 6 1.3704 -4.2906 0.0306 11 7 1.6516 -2.1385 1.1690 12 6 0.9744 -2.7225 2.1773 13 8 0.5791 -3.8676 2.0619 14 6 0.7146 -1.9795 3.4114 15 1 1.3539 -1.1549 3.6901 16 6 -0.3632 -2.3379 4.2309 17 7 -0.6297 -1.6393 5.3025 18 14 -1.4196 -3.8147 3.7919 19 1 -0.7861 -5.0504 4.3182 20 1 -2.7680 -3.6549 4.3931 21 1 -1.5444 -3.9126 2.3154 22 6 2.0413 -0.7241 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5148 0.8893 25 1 -0.3633 0.5127 -0.8906 26 1 3.1306 -0.7441 -1.2354 27 1 1.6988 -0.1952 -2.1390 28 1 3.0772 -2.8879 -2.5419 29 1 1.6046 -3.8874 -2.5438 30 1 1.6260 -2.3323 -3.4100 31 1 1.5839 -4.8320 -0.8911 32 1 1.7767 -4.8421 0.8784 33 1 0.2919 -4.1856 0.1487 34 1 -1.3759 -1.8878 5.8702 35 1 3.1275 -0.6466 1.2978 36 1 1.6008 -0.2737 2.1387 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166680934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -48.137791 kcal Electronic energy + Delta-G solvation = -16978.295331 eV Core-core repulsion = 14461.950192 eV Total energy + Delta-G solvation = -2516.345139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62782 -36.73028 -33.74750 -32.75844 -32.40539 -28.86125 -26.75144 -25.90979 -25.42749 -23.16998 -20.73388 -19.59735 -18.42213 -16.46918 -15.82255 -15.02439 -14.67595 -14.30970 -14.14584 -13.76233 -13.39028 -12.76700 -12.48728 -12.26016 -11.99636 -11.73025 -11.68855 -11.29763 -11.16699 -11.08753 -11.01667 -10.71115 -10.56037 -10.25710 -10.18160 -10.03490 -9.73049 -9.35273 -8.96218 -7.45887 -7.23248 -6.55556 -4.75153 3.47522 3.50440 3.77063 4.23081 4.25759 4.56693 5.03680 5.10118 5.18324 5.39895 5.50858 5.60243 5.76152 5.80924 5.86286 5.95473 6.04669 6.05377 6.12479 6.26936 6.28531 6.33343 6.45371 6.49299 6.55078 6.60139 6.68643 6.85154 6.99671 7.11525 7.29237 7.75917 7.96585 8.39511 8.79841 9.20255 10.09712 10.46076 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.011177 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.351698 B = 2504.529403 C = 2967.129790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.069 0.931 4 C -0.105 4.105 5 C -0.107 4.107 6 H 0.075 0.925 7 C -0.143 4.143 8 C 0.156 3.844 9 H 0.048 0.952 10 C -0.126 4.126 11 N -0.624 5.624 12 C 0.558 3.442 13 O -0.604 6.604 14 C -0.533 4.533 15 H 0.088 0.912 16 C 0.100 3.900 17 N -0.837 5.837 18 Si 0.955 3.045 19 H -0.280 1.280 20 H -0.324 1.324 21 H -0.254 1.254 22 C 0.124 3.876 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.280 0.720 35 H 0.043 0.957 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 2.460 -11.763 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.088 0.912 4 C -0.142 4.142 5 C -0.127 4.127 6 H 0.093 0.907 7 C -0.201 4.201 8 C 0.051 3.949 9 H 0.066 0.934 10 C -0.183 4.183 11 N -0.358 5.358 12 C 0.366 3.634 13 O -0.495 6.495 14 C -0.569 4.569 15 H 0.105 0.895 16 C -0.116 4.116 17 N -0.467 5.467 18 Si 0.787 3.213 19 H -0.206 1.206 20 H -0.255 1.255 21 H -0.179 1.179 22 C 0.000 4.000 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.587 1.955 -11.642 12.337 hybrid contribution -0.315 -0.345 -0.069 0.472 sum 3.272 1.609 -11.710 12.265 Atomic orbital electron populations 1.21776 0.94927 1.02499 1.00632 1.21503 0.96748 0.98652 0.95731 0.91217 1.21570 0.99871 0.95428 0.97372 1.21640 1.01225 0.94885 0.94916 0.90658 1.21823 1.00823 1.00563 0.96913 1.20954 0.97084 0.92168 0.84664 0.93440 1.22185 1.02893 0.94399 0.98850 1.47760 1.60462 1.09950 1.17647 1.18314 0.76048 0.85806 0.83226 1.90348 1.56612 1.19969 1.82613 1.20757 1.15088 1.17966 1.03133 0.89455 1.25702 0.96687 0.96581 0.92653 1.69544 1.27255 1.37474 1.12458 0.85475 0.75077 0.80549 0.80159 1.20583 1.25524 1.17856 1.21525 0.97748 0.82391 0.98318 0.91957 0.92458 0.93960 0.92479 0.92651 0.93054 0.92367 0.93159 0.95916 0.91043 0.91078 0.91015 0.93849 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.70 37.16 0.32 -1.98 16 2 C -0.11 -1.63 3.21 -90.50 -0.29 -1.92 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.10 -1.45 4.71 -26.69 -0.13 -1.58 16 5 C -0.11 -1.65 1.99 -90.50 -0.18 -1.83 16 6 H 0.08 1.28 6.34 -51.93 -0.33 0.95 16 7 C -0.14 -1.81 8.97 37.16 0.33 -1.48 16 8 C 0.16 2.88 2.95 -67.61 -0.20 2.68 16 9 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 10 C -0.13 -2.51 7.43 37.16 0.28 -2.23 16 11 N -0.62 -13.35 2.41 -166.88 -0.40 -13.75 16 12 C 0.56 14.47 7.14 -12.99 -0.09 14.38 16 13 O -0.60 -16.62 7.68 5.20 0.04 -16.58 16 14 C -0.53 -14.83 8.95 -35.63 -0.32 -15.15 16 15 H 0.09 2.46 6.67 -52.49 -0.35 2.11 16 16 C 0.10 2.84 5.52 -17.37 -0.10 2.75 16 17 N -0.84 -23.84 13.92 55.55 0.77 -23.07 16 18 Si 0.96 25.08 26.17 -169.99 -4.45 20.63 16 19 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.32 -8.19 7.11 56.52 0.40 -7.78 16 21 H -0.25 -6.92 6.25 56.52 0.35 -6.56 16 22 C 0.12 2.28 5.67 -3.71 -0.02 2.26 16 23 H 0.06 1.18 5.97 -51.93 -0.31 0.87 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.74 6.54 -51.92 -0.34 0.40 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.37 6.47 -51.93 -0.34 0.04 16 32 H 0.07 1.58 6.72 -51.93 -0.35 1.24 16 33 H 0.07 1.60 6.77 -51.93 -0.35 1.25 16 34 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 35 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.10 2.01 5.71 -51.93 -0.30 1.72 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -29.77 268.63 -6.03 -35.80 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.65 Total: -2.97 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.39 Total: -4.11 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.37 Total: -36.82 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.04 Total: -16.58 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.45 Total: 20.63 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.77 -6.03 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166680934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.338 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds