Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49535 * 2 1 4 4 C 1.53038 * 109.49890 * 239.93553 * 2 1 3 5 5 C 1.53048 * 109.53573 * 301.41250 * 4 2 1 6 6 H 1.09000 * 109.49547 * 58.62131 * 5 4 2 7 7 C 1.53005 * 109.49427 * 178.68424 * 5 4 2 8 8 C 1.53183 * 109.31318 * 298.63555 * 5 4 2 9 9 H 1.09009 * 109.58669 * 294.84743 * 8 5 4 10 10 C 1.52997 * 109.58880 * 174.42505 * 8 5 4 11 11 N 1.46921 * 108.77840 * 54.63476 * 8 5 4 12 12 C 1.34775 * 120.63153 * 126.38833 * 11 8 5 13 13 O 1.21687 * 120.00271 * 355.07663 * 12 11 8 14 14 C 1.46375 * 119.99901 * 175.06833 * 12 11 8 15 15 H 1.07997 * 120.00318 * 336.02722 * 14 12 11 16 16 C 1.40055 * 119.99899 * 156.02980 * 14 12 11 17 17 N 1.30669 * 120.00001 * 182.93045 * 16 14 12 18 18 Si 1.86803 * 120.00068 * 2.92605 * 16 14 12 19 19 H 1.48505 * 109.46703 * 84.75939 * 18 16 14 20 20 H 1.48493 * 109.47196 * 204.76042 * 18 16 14 21 21 H 1.48503 * 109.47155 * 324.76249 * 18 16 14 22 22 C 1.46927 * 118.73882 * 306.39541 * 11 8 5 23 23 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46901 * 300.06529 * 1 2 3 25 25 H 1.08998 * 109.46876 * 60.06943 * 1 2 3 26 26 H 1.09000 * 109.46144 * 181.39785 * 4 2 1 27 27 H 1.09004 * 109.46222 * 61.43080 * 4 2 1 28 28 H 1.08999 * 109.47256 * 60.00047 * 7 5 4 29 29 H 1.09007 * 109.46956 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47169 * 299.99664 * 7 5 4 31 31 H 1.09003 * 109.47471 * 56.87349 * 10 8 5 32 32 H 1.08998 * 109.47371 * 176.87594 * 10 8 5 33 33 H 1.09000 * 109.47066 * 296.87323 * 10 8 5 34 34 H 0.96999 * 119.99916 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.58511 * 293.81799 * 22 11 8 36 36 H 1.08995 * 109.59085 * 173.39538 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5031 -2.1555 -1.2665 6 1 0.4133 -2.1351 -1.2552 7 6 1.9875 -2.8668 -2.5316 8 6 2.0140 -2.9040 -0.0316 9 1 3.0980 -3.0042 -0.0876 10 6 1.3704 -4.2906 0.0306 11 7 1.6516 -2.1385 1.1690 12 6 0.9744 -2.7225 2.1773 13 8 0.5791 -3.8676 2.0619 14 6 0.7146 -1.9795 3.4114 15 1 1.3539 -1.1549 3.6901 16 6 -0.3632 -2.3379 4.2309 17 7 -0.6297 -1.6393 5.3025 18 14 -1.4196 -3.8147 3.7919 19 1 -0.7861 -5.0504 4.3182 20 1 -2.7680 -3.6549 4.3931 21 1 -1.5444 -3.9126 2.3154 22 6 2.0413 -0.7241 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5148 0.8893 25 1 -0.3633 0.5127 -0.8906 26 1 3.1306 -0.7441 -1.2354 27 1 1.6988 -0.1952 -2.1390 28 1 3.0772 -2.8879 -2.5419 29 1 1.6046 -3.8874 -2.5438 30 1 1.6260 -2.3323 -3.4100 31 1 1.5839 -4.8320 -0.8911 32 1 1.7767 -4.8421 0.8784 33 1 0.2919 -4.1856 0.1487 34 1 -1.3759 -1.8878 5.8702 35 1 3.1275 -0.6466 1.2978 36 1 1.6008 -0.2737 2.1387 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166680934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -66.356381 kcal Electronic energy + Delta-G solvation = -16979.085349 eV Core-core repulsion = 14461.950192 eV Total energy + Delta-G solvation = -2517.135157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22178 -38.48688 -35.29488 -34.69220 -34.07138 -30.39153 -28.45826 -27.32907 -26.94868 -24.70402 -22.14128 -21.31795 -19.94326 -18.40867 -17.75719 -16.70040 -16.24571 -16.07100 -15.50530 -15.13181 -14.88919 -14.46849 -14.17967 -13.97921 -13.74466 -13.25351 -13.14779 -12.78807 -12.74497 -12.62635 -12.54532 -12.34186 -12.21236 -11.88385 -11.62947 -11.42055 -11.25248 -11.12642 -10.93300 -9.36706 -9.04242 -8.73931 -6.93143 1.32817 1.36266 1.62044 2.14138 2.33555 2.69606 3.32042 3.81353 3.90901 3.97259 4.14556 4.30881 4.41690 4.49615 4.66247 4.73585 4.80816 4.85927 4.89637 4.94666 4.97877 5.08636 5.12075 5.15885 5.20382 5.27038 5.39077 5.43862 5.46456 5.61300 5.66468 5.74763 6.10145 6.33116 6.69810 7.21374 8.07122 8.32256 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.011177 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.351698 B = 2504.529403 C = 2967.129790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.099 4.099 5 C -0.103 4.103 6 H 0.054 0.946 7 C -0.137 4.137 8 C 0.148 3.852 9 H 0.065 0.935 10 C -0.117 4.117 11 N -0.624 5.624 12 C 0.555 3.445 13 O -0.625 6.625 14 C -0.549 4.549 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.861 5.861 18 Si 1.001 2.999 19 H -0.290 1.290 20 H -0.307 1.307 21 H -0.274 1.274 22 C 0.118 3.882 23 H 0.029 0.971 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.288 0.712 35 H 0.064 0.936 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 3.223 -14.328 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.118 0.882 4 C -0.136 4.136 5 C -0.122 4.122 6 H 0.073 0.927 7 C -0.195 4.195 8 C 0.045 3.955 9 H 0.083 0.917 10 C -0.174 4.174 11 N -0.356 5.356 12 C 0.361 3.639 13 O -0.518 6.518 14 C -0.586 4.586 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.493 5.493 18 Si 0.834 3.166 19 H -0.217 1.217 20 H -0.237 1.237 21 H -0.201 1.201 22 C -0.006 4.006 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.671 2.747 -14.221 15.219 hybrid contribution -0.582 -0.573 0.683 1.065 sum 4.089 2.174 -13.539 14.309 Atomic orbital electron populations 1.21737 0.96093 1.00521 1.01162 1.21505 0.95648 1.00049 0.94821 0.88195 1.21565 1.00809 0.93949 0.97287 1.21575 1.00046 0.96128 0.94455 0.92720 1.21779 1.01729 1.00139 0.95855 1.21238 0.97972 0.91468 0.84805 0.91666 1.21967 1.00468 0.95644 0.99319 1.47730 1.58991 1.11365 1.17491 1.18194 0.76532 0.85385 0.83828 1.90347 1.57520 1.20765 1.83148 1.20948 1.15130 1.17995 1.04484 0.90682 1.26177 0.97617 0.97924 0.92895 1.69558 1.28258 1.38390 1.13106 0.84789 0.74955 0.78411 0.78465 1.21677 1.23688 1.20054 1.21707 0.98849 0.80781 0.99214 0.95137 0.94256 0.91106 0.90755 0.89955 0.91576 0.92833 0.91091 0.92318 0.94081 0.94485 0.90194 0.91776 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.70 71.98 0.63 -3.70 16 2 C -0.10 -2.80 3.21 -10.72 -0.03 -2.83 16 3 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.10 -2.29 4.71 30.62 0.14 -2.14 16 5 C -0.10 -2.85 1.99 -10.71 -0.02 -2.87 16 6 H 0.05 1.77 6.34 -2.39 -0.02 1.75 16 7 C -0.14 -2.88 8.97 71.98 0.65 -2.24 16 8 C 0.15 5.24 2.95 44.97 0.13 5.37 16 9 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 10 C -0.12 -4.60 7.43 71.98 0.53 -4.06 16 11 N -0.62 -26.49 2.41 -800.10 -1.93 -28.42 16 12 C 0.56 29.47 7.14 86.36 0.62 30.09 16 13 O -0.62 -35.35 7.68 -4.31 -0.03 -35.38 16 14 C -0.55 -31.46 8.95 24.83 0.22 -31.24 16 15 H 0.08 4.39 6.67 -2.91 -0.02 4.37 16 16 C 0.07 3.92 5.52 85.31 0.47 4.39 16 17 N -0.86 -49.92 13.92 21.84 0.30 -49.62 16 18 Si 1.00 53.02 26.17 68.60 1.79 54.81 16 19 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 20 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 21 H -0.27 -15.32 6.25 99.48 0.62 -14.70 16 22 C 0.12 4.19 5.67 86.36 0.49 4.68 16 23 H 0.03 1.14 5.97 -2.38 -0.01 1.12 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.17 6.54 -2.38 -0.02 1.15 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.85 6.47 -2.39 -0.02 1.84 16 32 H 0.04 1.83 6.72 -2.39 -0.02 1.82 16 33 H 0.04 1.69 6.77 -2.39 -0.02 1.67 16 34 H 0.29 15.36 8.29 -92.71 -0.77 14.59 16 35 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.07 2.94 5.71 -2.39 -0.01 2.92 16 Total: -1.00 -66.08 268.63 4.93 -61.15 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 0.97 Total: 2.02 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 3.83 Total: -4.56 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.62 Total: -78.04 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.03 Total: -35.38 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.79 Total: 54.81 kcal Total: -66.08 4.93 -61.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166680934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.208 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds