Wall clock time and date at job start Mon Mar 30 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46901 * 2 1 4 4 C 1.50703 * 109.47359 * 239.99768 * 2 1 3 5 5 H 1.08000 * 119.99514 * 245.05971 * 4 2 1 6 6 C 1.37872 * 119.99780 * 65.06234 * 4 2 1 7 7 N 1.31512 * 120.00259 * 8.65371 * 6 4 2 8 8 Si 1.86800 * 119.99795 * 188.65299 * 6 4 2 9 9 H 1.48501 * 109.47264 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47290 * 300.00015 * 8 6 4 11 11 H 1.48501 * 109.47014 * 60.00050 * 8 6 4 12 12 N 1.46902 * 109.46862 * 119.99635 * 2 1 3 13 13 C 1.46886 * 111.00303 * 301.98953 * 12 2 1 14 14 C 1.51231 * 109.38408 * 177.93715 * 13 12 2 15 15 O 1.42686 * 108.78413 * 59.16124 * 14 13 12 16 16 C 1.42941 * 115.18041 * 300.27518 * 15 14 13 17 17 H 1.09009 * 112.51983 * 287.09356 * 16 15 14 18 18 C 1.55496 * 106.84152 * 163.40678 * 16 15 14 19 19 C 1.54369 * 104.03204 * 282.66384 * 18 16 15 20 20 C 1.52678 * 106.33754 * 336.90012 * 19 18 16 21 21 C 1.45421 * 111.00067 * 176.12788 * 12 2 1 22 22 H 1.09002 * 109.48686 * 298.12689 * 21 12 2 23 23 H 1.09007 * 109.47338 * 186.06837 * 1 2 3 24 24 H 1.08998 * 109.47698 * 306.07250 * 1 2 3 25 25 H 1.09005 * 109.47186 * 66.07032 * 1 2 3 26 26 H 0.96996 * 120.00146 * 5.59396 * 7 6 4 27 27 H 1.09000 * 109.70787 * 296.46304 * 13 12 2 28 28 H 1.09000 * 109.70203 * 57.08078 * 13 12 2 29 29 H 1.09001 * 109.04333 * 299.62802 * 14 13 12 30 30 H 1.08997 * 110.07942 * 179.31261 * 14 13 12 31 31 H 1.08999 * 110.52105 * 41.29871 * 18 16 15 32 32 H 1.08997 * 110.51928 * 164.03175 * 18 16 15 33 33 H 1.09001 * 110.04887 * 95.26099 * 19 18 16 34 34 H 1.08998 * 110.05428 * 216.69260 * 19 18 16 35 35 H 1.09002 * 109.14109 * 239.50317 * 20 19 18 36 36 H 1.08991 * 110.37625 * 118.31241 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5842 -1.6337 -1.1333 6 6 1.7875 -0.1817 -2.4800 7 7 1.2684 1.0211 -2.5949 8 14 2.1932 -1.1739 -4.0098 9 1 1.8375 -0.3878 -5.2184 10 1 3.6457 -1.4823 -4.0291 11 1 1.4183 -2.4407 -3.9981 12 7 2.0196 -0.6924 1.1995 13 6 1.5101 -0.0544 2.4205 14 6 1.9938 -0.8248 3.6287 15 8 3.4206 -0.8342 3.6266 16 6 4.0231 -1.4320 2.4765 17 1 3.9257 -2.5178 2.4709 18 6 5.5086 -0.9729 2.4561 19 6 5.4454 0.4755 1.9259 20 6 4.1398 0.5896 1.1427 21 6 3.4703 -0.7918 1.1882 22 1 3.7880 -1.3780 0.3259 23 1 -0.3634 -1.0220 0.1086 24 1 -0.3634 0.6051 0.8306 25 1 -0.3634 0.4169 -0.9394 26 1 1.1330 1.5684 -1.8055 27 1 1.8931 0.9637 2.4905 28 1 0.4205 -0.0371 2.3989 29 1 1.6206 -1.8473 3.5713 30 1 1.6319 -0.3535 4.5425 31 1 5.9287 -0.9936 3.4616 32 1 6.0933 -1.6006 1.7837 33 1 5.4299 1.1781 2.7591 34 1 6.3032 0.6763 1.2840 35 1 4.3642 0.8637 0.1118 36 1 3.4890 1.3367 1.5966 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221005255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:33 Heat of formation + Delta-G solvation = -46.651381 kcal Electronic energy + Delta-G solvation = -16962.192437 eV Core-core repulsion = 14445.911753 eV Total energy + Delta-G solvation = -2516.280684 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99832 -35.98805 -35.21770 -32.86442 -29.54318 -28.89826 -27.62802 -25.12320 -24.85855 -22.40402 -20.78907 -19.87242 -18.41655 -16.69174 -16.18154 -15.95978 -15.22119 -14.86002 -14.03196 -13.78196 -13.62901 -13.12895 -12.59694 -12.20074 -11.88605 -11.53052 -11.29069 -11.12775 -10.90502 -10.84624 -10.79684 -10.66139 -10.43938 -10.22978 -10.10288 -10.00158 -9.67895 -9.01821 -8.47194 -8.38345 -7.24537 -6.35176 -4.06156 3.42828 3.45445 3.63496 4.08408 4.49276 4.69207 5.03304 5.14722 5.26627 5.34961 5.55003 5.62644 5.67857 5.74128 5.90515 6.01412 6.04350 6.10409 6.15089 6.24532 6.30880 6.41024 6.49045 6.52639 6.70037 6.77022 6.81008 6.93410 7.13694 7.45520 7.65076 7.87170 8.03421 8.37644 8.56648 8.85824 9.63297 11.00598 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.009972 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.510099 B = 2807.076230 C = 3262.041089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.204 3.796 3 H -0.005 1.005 4 C -0.584 4.584 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 1.063 2.937 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.288 1.288 12 N -0.523 5.523 13 C 0.014 3.986 14 C 0.068 3.932 15 O -0.386 6.386 16 C 0.086 3.914 17 H 0.071 0.929 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.144 4.144 21 C 0.075 3.925 22 H 0.100 0.900 23 H 0.045 0.955 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.269 0.731 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -2.818 9.363 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.098 3.902 3 H 0.012 0.988 4 C -0.622 4.622 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.892 3.108 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.214 1.214 12 N -0.247 5.247 13 C -0.114 4.114 14 C -0.009 4.009 15 O -0.305 6.305 16 C 0.028 3.972 17 H 0.089 0.911 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.183 4.183 21 C -0.035 4.035 22 H 0.118 0.882 23 H 0.064 0.936 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.311 -3.185 7.832 9.490 hybrid contribution 0.136 0.793 1.450 1.658 sum 4.447 -2.392 9.281 10.566 Atomic orbital electron populations 1.21917 0.98451 0.99720 0.99519 1.19319 0.91458 0.92272 0.87108 0.98788 1.21860 1.38921 1.10178 0.91251 0.92652 1.25713 0.94336 0.97065 1.01103 1.70781 1.41512 1.08778 1.33681 0.83631 0.76179 0.75237 0.75769 1.20909 1.21540 1.21408 1.61378 1.07660 1.53573 1.02104 1.22348 1.00648 0.96540 0.91868 1.22183 0.81286 0.99888 0.97569 1.87731 1.19453 1.81195 1.42097 1.23276 0.92548 0.95911 0.85448 0.91079 1.22543 0.94714 0.97016 1.01170 1.21816 0.97848 0.96375 0.99225 1.22252 0.96099 0.99467 1.00496 1.22288 0.88160 0.95562 0.97495 0.88229 0.93606 0.96579 0.91968 0.91989 0.95227 0.90074 0.93103 0.89403 0.91170 0.90562 0.92467 0.92230 0.91442 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.43 37.15 0.31 -2.94 16 2 C 0.20 5.06 1.38 -68.86 -0.10 4.96 16 3 H -0.01 -0.14 6.49 -51.93 -0.34 -0.48 16 4 C -0.58 -15.83 7.75 -34.44 -0.27 -16.10 16 5 H 0.06 1.52 6.61 -52.49 -0.35 1.17 16 6 C 0.02 0.61 5.16 -17.82 -0.09 0.52 16 7 N -0.91 -26.75 12.79 55.43 0.71 -26.04 16 8 Si 1.06 24.80 29.91 -169.99 -5.08 19.72 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.52 -11.27 4.48 -221.31 -0.99 -12.26 16 13 C 0.01 0.27 5.00 -4.72 -0.02 0.24 16 14 C 0.07 1.08 6.96 36.27 0.25 1.34 16 15 O -0.39 -6.69 9.98 -35.23 -0.35 -7.04 16 16 C 0.09 1.46 4.08 -24.82 -0.10 1.36 16 17 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 18 C -0.12 -1.70 6.42 -24.69 -0.16 -1.86 16 19 C -0.11 -1.80 6.66 -26.18 -0.17 -1.98 16 20 C -0.14 -2.78 4.92 -26.60 -0.13 -2.91 16 21 C 0.07 1.49 2.34 -67.63 -0.16 1.34 16 22 H 0.10 2.18 6.37 -51.93 -0.33 1.85 16 23 H 0.04 1.06 8.14 -51.92 -0.42 0.64 16 24 H 0.02 0.33 6.66 -51.93 -0.35 -0.02 16 25 H 0.06 1.59 6.43 -51.93 -0.33 1.26 16 26 H 0.27 7.92 6.37 -40.82 -0.26 7.66 16 27 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 28 H 0.08 1.45 6.26 -51.93 -0.33 1.13 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.14 6.10 -51.93 -0.32 0.83 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -29.05 268.67 -7.84 -36.89 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.53 Total: 0.72 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.64 Total: -16.03 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.28 Total: -38.31 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.35 Total: -7.04 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.05 -7.84 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221005255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.765 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds