Wall clock time and date at job start Mon Mar 30 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46901 * 2 1 4 4 C 1.50703 * 109.47359 * 239.99768 * 2 1 3 5 5 H 1.08000 * 119.99514 * 245.05971 * 4 2 1 6 6 C 1.37872 * 119.99780 * 65.06234 * 4 2 1 7 7 N 1.31512 * 120.00259 * 8.65371 * 6 4 2 8 8 Si 1.86800 * 119.99795 * 188.65299 * 6 4 2 9 9 H 1.48501 * 109.47264 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47290 * 300.00015 * 8 6 4 11 11 H 1.48501 * 109.47014 * 60.00050 * 8 6 4 12 12 N 1.46902 * 109.46862 * 119.99635 * 2 1 3 13 13 C 1.46886 * 111.00303 * 301.98953 * 12 2 1 14 14 C 1.51231 * 109.38408 * 177.93715 * 13 12 2 15 15 O 1.42686 * 108.78413 * 59.16124 * 14 13 12 16 16 C 1.42941 * 115.18041 * 300.27518 * 15 14 13 17 17 H 1.09009 * 112.51983 * 287.09356 * 16 15 14 18 18 C 1.55496 * 106.84152 * 163.40678 * 16 15 14 19 19 C 1.54369 * 104.03204 * 282.66384 * 18 16 15 20 20 C 1.52678 * 106.33754 * 336.90012 * 19 18 16 21 21 C 1.45421 * 111.00067 * 176.12788 * 12 2 1 22 22 H 1.09002 * 109.48686 * 298.12689 * 21 12 2 23 23 H 1.09007 * 109.47338 * 186.06837 * 1 2 3 24 24 H 1.08998 * 109.47698 * 306.07250 * 1 2 3 25 25 H 1.09005 * 109.47186 * 66.07032 * 1 2 3 26 26 H 0.96996 * 120.00146 * 5.59396 * 7 6 4 27 27 H 1.09000 * 109.70787 * 296.46304 * 13 12 2 28 28 H 1.09000 * 109.70203 * 57.08078 * 13 12 2 29 29 H 1.09001 * 109.04333 * 299.62802 * 14 13 12 30 30 H 1.08997 * 110.07942 * 179.31261 * 14 13 12 31 31 H 1.08999 * 110.52105 * 41.29871 * 18 16 15 32 32 H 1.08997 * 110.51928 * 164.03175 * 18 16 15 33 33 H 1.09001 * 110.04887 * 95.26099 * 19 18 16 34 34 H 1.08998 * 110.05428 * 216.69260 * 19 18 16 35 35 H 1.09002 * 109.14109 * 239.50317 * 20 19 18 36 36 H 1.08991 * 110.37625 * 118.31241 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5842 -1.6337 -1.1333 6 6 1.7875 -0.1817 -2.4800 7 7 1.2684 1.0211 -2.5949 8 14 2.1932 -1.1739 -4.0098 9 1 1.8375 -0.3878 -5.2184 10 1 3.6457 -1.4823 -4.0291 11 1 1.4183 -2.4407 -3.9981 12 7 2.0196 -0.6924 1.1995 13 6 1.5101 -0.0544 2.4205 14 6 1.9938 -0.8248 3.6287 15 8 3.4206 -0.8342 3.6266 16 6 4.0231 -1.4320 2.4765 17 1 3.9257 -2.5178 2.4709 18 6 5.5086 -0.9729 2.4561 19 6 5.4454 0.4755 1.9259 20 6 4.1398 0.5896 1.1427 21 6 3.4703 -0.7918 1.1882 22 1 3.7880 -1.3780 0.3259 23 1 -0.3634 -1.0220 0.1086 24 1 -0.3634 0.6051 0.8306 25 1 -0.3634 0.4169 -0.9394 26 1 1.1330 1.5684 -1.8055 27 1 1.8931 0.9637 2.4905 28 1 0.4205 -0.0371 2.3989 29 1 1.6206 -1.8473 3.5713 30 1 1.6319 -0.3535 4.5425 31 1 5.9287 -0.9936 3.4616 32 1 6.0933 -1.6006 1.7837 33 1 5.4299 1.1781 2.7591 34 1 6.3032 0.6763 1.2840 35 1 4.3642 0.8637 0.1118 36 1 3.4890 1.3367 1.5966 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221005255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:33 Heat of formation + Delta-G solvation = -65.838176 kcal Electronic energy + Delta-G solvation = -16963.024439 eV Core-core repulsion = 14445.911753 eV Total energy + Delta-G solvation = -2517.112686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48638 -37.69958 -36.59404 -34.80952 -31.29706 -30.47257 -29.04849 -26.93715 -26.64264 -23.95137 -22.56666 -21.26966 -20.03923 -18.60102 -17.81013 -17.37863 -16.73592 -16.29434 -15.75634 -15.62347 -15.14281 -14.71139 -14.23644 -13.69060 -13.62274 -13.22700 -13.05044 -12.80714 -12.59119 -12.46941 -12.35172 -12.25722 -12.04163 -11.95528 -11.90241 -11.43182 -11.12223 -10.61204 -10.52842 -10.32836 -9.01201 -8.57786 -6.28923 1.53023 1.59974 1.79181 2.56308 2.77340 3.07995 3.20405 3.64323 3.80319 3.88568 4.14266 4.24665 4.28215 4.35611 4.50214 4.52485 4.64425 4.70900 4.73429 4.73915 4.82148 4.86647 4.88617 5.00987 5.01549 5.12454 5.20931 5.28070 5.39533 5.50704 5.89933 6.06848 6.31141 6.47056 6.48837 6.72633 7.48513 8.77752 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.009972 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.510099 B = 2807.076230 C = 3262.041089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.209 3.791 3 H -0.039 1.039 4 C -0.588 4.588 5 H 0.049 0.951 6 C -0.026 4.026 7 N -0.935 5.935 8 Si 1.108 2.892 9 H -0.287 1.287 10 H -0.272 1.272 11 H -0.273 1.273 12 N -0.530 5.530 13 C 0.014 3.986 14 C 0.071 3.929 15 O -0.389 6.389 16 C 0.089 3.911 17 H 0.083 0.917 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.138 4.138 21 C 0.068 3.932 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.256 0.744 27 H 0.017 0.983 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -4.173 10.786 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H -0.022 1.022 4 C -0.626 4.626 5 H 0.067 0.933 6 C -0.224 4.224 7 N -0.572 5.572 8 Si 0.931 3.069 9 H -0.213 1.213 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.005 4.005 15 O -0.308 6.308 16 C 0.032 3.968 17 H 0.101 0.899 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.178 4.178 21 C -0.042 4.042 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.227 -4.550 9.289 11.589 hybrid contribution -0.171 1.246 1.049 1.638 sum 5.057 -3.303 10.338 11.973 Atomic orbital electron populations 1.21744 0.97557 1.00002 0.99135 1.19121 0.92076 0.90437 0.88202 1.02204 1.22118 1.38349 1.09742 0.92419 0.93297 1.27046 0.93806 0.97213 1.04362 1.70898 1.43595 1.09756 1.32981 0.83047 0.77109 0.74417 0.72352 1.21257 1.19761 1.19794 1.61322 1.08846 1.53189 1.02030 1.22468 1.00988 0.96264 0.91733 1.22312 0.80704 1.00125 0.97395 1.87737 1.20070 1.81252 1.41770 1.23320 0.93752 0.96261 0.83516 0.89927 1.22566 0.93241 0.95908 1.02786 1.21794 0.95983 0.97803 0.99146 1.22152 0.97961 0.98658 0.99004 1.22337 0.87410 0.95736 0.98694 0.90758 0.93370 0.94200 0.94493 0.93428 0.96473 0.89468 0.92394 0.86054 0.89007 0.88785 0.91740 0.90740 0.94743 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.43 71.98 0.61 -5.43 16 2 C 0.21 10.61 1.38 44.17 0.06 10.67 16 3 H -0.04 -2.24 6.49 -2.39 -0.02 -2.26 16 4 C -0.59 -32.62 7.75 25.60 0.20 -32.42 16 5 H 0.05 2.73 6.61 -2.91 -0.02 2.71 16 6 C -0.03 -1.47 5.16 84.65 0.44 -1.03 16 7 N -0.93 -56.53 12.79 21.44 0.27 -56.25 16 8 Si 1.11 50.15 29.91 68.60 2.05 52.20 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 N -0.53 -22.87 4.48 -854.08 -3.83 -26.69 16 13 C 0.01 0.49 5.00 85.73 0.43 0.92 16 14 C 0.07 2.08 6.96 71.40 0.50 2.58 16 15 O -0.39 -12.35 9.98 -148.98 -1.49 -13.84 16 16 C 0.09 2.84 4.08 31.83 0.13 2.97 16 17 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 18 C -0.11 -2.80 6.42 31.92 0.20 -2.59 16 19 C -0.11 -3.25 6.66 30.95 0.21 -3.04 16 20 C -0.14 -5.44 4.92 30.68 0.15 -5.29 16 21 C 0.07 2.71 2.34 45.76 0.11 2.82 16 22 H 0.07 3.31 6.37 -2.39 -0.02 3.29 16 23 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.04 1.66 6.66 -2.39 -0.02 1.65 16 25 H 0.04 1.93 6.43 -2.38 -0.02 1.91 16 26 H 0.26 15.76 6.37 -92.71 -0.59 15.17 16 27 H 0.02 0.66 6.50 -2.39 -0.02 0.65 16 28 H 0.09 3.01 6.26 -2.39 -0.01 2.99 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.60 6.10 -2.39 -0.01 1.58 16 Total: -1.00 -63.58 268.67 1.27 -62.31 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.23 Total: 12.12 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.03 Total: -29.85 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.55 Total: -82.95 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.49 Total: -13.84 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -63.58 1.27 -62.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221005255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.524 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds