Wall clock time and date at job start Mon Mar 30 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.50705 * 109.46875 * 119.99737 * 2 1 3 5 5 H 1.07998 * 119.99966 * 119.99543 * 4 2 1 6 6 C 1.37875 * 120.00132 * 299.99933 * 4 2 1 7 7 N 1.31513 * 120.00142 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99932 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47124 * 90.00270 * 8 6 4 10 10 H 1.48501 * 109.47332 * 209.99907 * 8 6 4 11 11 H 1.48494 * 109.47421 * 330.00304 * 8 6 4 12 12 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 13 13 C 1.46499 * 120.00225 * 300.00126 * 12 2 1 14 14 C 1.34780 * 119.99546 * 120.00689 * 12 2 1 15 15 O 1.21279 * 120.00031 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99563 * 180.02562 * 14 12 2 17 17 H 1.08998 * 115.55538 * 34.41104 * 16 14 12 18 18 C 1.53002 * 117.49862 * 248.74042 * 16 14 12 19 19 C 1.52998 * 117.49735 * 180.08369 * 16 14 12 20 20 C 1.53004 * 117.50173 * 214.97612 * 19 16 14 21 21 C 1.53004 * 117.49771 * 359.97298 * 19 16 14 22 22 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 23 23 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 25 25 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 27 27 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 28 28 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 29 29 H 1.09000 * 117.49762 * 0.02562 * 18 16 14 30 30 H 1.09003 * 117.50172 * 145.02094 * 18 16 14 31 31 H 1.09006 * 109.46581 * 60.00275 * 20 19 16 32 32 H 1.08996 * 109.47595 * 179.97438 * 20 19 16 33 33 H 1.09000 * 109.47028 * 300.00469 * 20 19 16 34 34 H 1.09004 * 109.46741 * 60.00286 * 21 19 16 35 35 H 1.09001 * 109.47096 * 179.97438 * 21 19 16 36 36 H 1.08997 * 109.47121 * 300.00035 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8747 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7933 -0.0357 -2.0832 15 8 3.0860 1.1255 -1.8915 16 6 3.2952 -0.7461 -3.3139 17 1 2.6154 -1.4830 -3.7415 18 6 4.7952 -1.0347 -3.4007 19 6 4.1722 0.0511 -4.2814 20 6 4.0282 -0.2474 -5.7752 21 6 4.4720 1.5088 -3.9257 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9031 -0.5279 4.4376 26 1 2.4157 -2.7378 -0.9715 27 1 1.6238 -2.2853 -2.5001 28 1 0.6904 -2.3003 -0.9845 29 1 5.4190 -0.7112 -2.5674 30 1 5.1023 -1.9614 -3.8857 31 1 3.0025 -0.0510 -6.0876 32 1 4.7081 0.3901 -6.3403 33 1 4.2709 -1.2935 -5.9616 34 1 4.9896 1.5497 -2.9673 35 1 5.1028 1.9488 -4.6980 36 1 3.5376 2.0659 -3.8582 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228663369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:26 Heat of formation + Delta-G solvation = -6.952608 kcal Electronic energy + Delta-G solvation = -16219.265288 eV Core-core repulsion = 13704.706072 eV Total energy + Delta-G solvation = -2514.559216 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81331 -37.21073 -35.25569 -32.74159 -30.59751 -29.05346 -27.28894 -26.19047 -25.13824 -24.00692 -20.90458 -19.13842 -17.95600 -17.07551 -16.22759 -15.54243 -14.79366 -14.44033 -13.88595 -13.65161 -13.40873 -12.98024 -12.74885 -12.39603 -12.26671 -12.19153 -11.99465 -11.76486 -11.67586 -11.33423 -11.12426 -11.03765 -10.64644 -10.12634 -9.97091 -9.65014 -9.56886 -9.29056 -8.76742 -8.62640 -7.66792 -6.13640 -4.13969 3.11858 3.23768 3.37256 3.40263 3.73875 4.08000 4.35987 4.82815 4.86135 5.01583 5.18977 5.20921 5.33199 5.64386 5.70220 5.77125 5.83566 5.97352 6.00913 6.12312 6.16243 6.23324 6.25165 6.29114 6.35632 6.37113 6.51232 6.77538 6.86025 7.15385 7.39307 7.65190 8.23585 8.50694 8.87200 8.99019 9.47735 10.99232 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041786 B = 0.007499 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.924986 B = 3733.091701 C = 3855.600080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.585 5.585 13 C 0.089 3.911 14 C 0.535 3.465 15 O -0.549 6.549 16 C -0.183 4.183 17 H 0.118 0.882 18 C -0.147 4.147 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.100 4.100 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -1.337 -15.254 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.315 5.315 13 C -0.055 4.055 14 C 0.322 3.678 15 O -0.428 6.428 16 C -0.204 4.204 17 H 0.136 0.864 18 C -0.185 4.185 19 C -0.102 4.102 20 C -0.170 4.170 21 C -0.157 4.157 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.909 -0.739 -14.917 14.963 hybrid contribution -0.759 0.403 0.430 0.961 sum 0.150 -0.336 -14.487 14.492 Atomic orbital electron populations 1.22460 0.99220 1.01023 0.99226 1.19275 0.89881 0.95208 0.82916 0.91996 1.21173 1.32579 1.14172 0.88500 0.90401 1.24871 0.95707 0.96592 0.95633 1.69876 1.45323 1.40215 0.97949 0.86911 0.80404 0.83879 0.77458 1.20431 1.22141 1.18822 1.47816 1.49254 1.11775 1.22699 1.21589 1.01594 0.82862 0.99436 1.19501 0.78620 0.86466 0.83225 1.90630 1.58324 1.17013 1.76844 1.22442 0.95337 1.04189 0.98423 0.86420 1.23169 0.92999 0.99862 1.02427 1.21565 1.01969 0.94525 0.92183 1.21366 1.01871 1.01218 0.92566 1.21323 1.01819 0.91973 1.00611 0.94827 0.92554 0.93182 0.92465 0.92876 0.92685 0.91042 0.88277 0.88336 0.92251 0.91943 0.92526 0.91524 0.93885 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.65 37.16 0.32 -3.21 16 2 C 0.23 5.63 2.23 -69.08 -0.15 5.48 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.78 8.95 -34.44 -0.31 -15.09 16 5 H 0.08 2.36 7.89 -52.49 -0.41 1.94 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 8 Si 0.88 22.13 24.37 -169.99 -4.14 17.98 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.59 -12.33 2.75 -175.26 -0.48 -12.81 16 13 C 0.09 1.50 9.51 59.85 0.57 2.07 16 14 C 0.53 10.88 7.44 -10.98 -0.08 10.79 16 15 O -0.55 -12.85 12.43 5.56 0.07 -12.78 16 16 C -0.18 -2.79 5.00 -91.77 -0.46 -3.25 16 17 H 0.12 1.52 6.44 -51.93 -0.33 1.19 16 18 C -0.15 -2.00 9.53 -26.69 -0.25 -2.25 16 19 C -0.10 -1.39 2.70 -154.47 -0.42 -1.80 16 20 C -0.11 -1.16 9.85 37.16 0.37 -0.80 16 21 C -0.10 -1.52 8.09 37.16 0.30 -1.22 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 24 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 25 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.72 6.00 -51.93 -0.31 0.41 16 28 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 29 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 30 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 7.92 -51.93 -0.41 0.16 16 33 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 34 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 35 H 0.04 0.54 7.92 -51.93 -0.41 0.12 16 36 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -31.87 280.93 -5.24 -37.12 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.48 Total: -0.04 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.21 Total: -7.22 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.29 Total: -39.29 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.87 -5.24 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228663369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.164 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds