Wall clock time and date at job start Mon Mar 30 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.50705 * 109.46875 * 119.99737 * 2 1 3 5 5 H 1.07998 * 119.99966 * 119.99543 * 4 2 1 6 6 C 1.37875 * 120.00132 * 299.99933 * 4 2 1 7 7 N 1.31513 * 120.00142 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99932 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47124 * 90.00270 * 8 6 4 10 10 H 1.48501 * 109.47332 * 209.99907 * 8 6 4 11 11 H 1.48494 * 109.47421 * 330.00304 * 8 6 4 12 12 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 13 13 C 1.46499 * 120.00225 * 300.00126 * 12 2 1 14 14 C 1.34780 * 119.99546 * 120.00689 * 12 2 1 15 15 O 1.21279 * 120.00031 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99563 * 180.02562 * 14 12 2 17 17 H 1.08998 * 115.55538 * 34.41104 * 16 14 12 18 18 C 1.53002 * 117.49862 * 248.74042 * 16 14 12 19 19 C 1.52998 * 117.49735 * 180.08369 * 16 14 12 20 20 C 1.53004 * 117.50173 * 214.97612 * 19 16 14 21 21 C 1.53004 * 117.49771 * 359.97298 * 19 16 14 22 22 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 23 23 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 25 25 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 27 27 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 28 28 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 29 29 H 1.09000 * 117.49762 * 0.02562 * 18 16 14 30 30 H 1.09003 * 117.50172 * 145.02094 * 18 16 14 31 31 H 1.09006 * 109.46581 * 60.00275 * 20 19 16 32 32 H 1.08996 * 109.47595 * 179.97438 * 20 19 16 33 33 H 1.09000 * 109.47028 * 300.00469 * 20 19 16 34 34 H 1.09004 * 109.46741 * 60.00286 * 21 19 16 35 35 H 1.09001 * 109.47096 * 179.97438 * 21 19 16 36 36 H 1.08997 * 109.47121 * 300.00035 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8747 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7933 -0.0357 -2.0832 15 8 3.0860 1.1255 -1.8915 16 6 3.2952 -0.7461 -3.3139 17 1 2.6154 -1.4830 -3.7415 18 6 4.7952 -1.0347 -3.4007 19 6 4.1722 0.0511 -4.2814 20 6 4.0282 -0.2474 -5.7752 21 6 4.4720 1.5088 -3.9257 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9031 -0.5279 4.4376 26 1 2.4157 -2.7378 -0.9715 27 1 1.6238 -2.2853 -2.5001 28 1 0.6904 -2.3003 -0.9845 29 1 5.4190 -0.7112 -2.5674 30 1 5.1023 -1.9614 -3.8857 31 1 3.0025 -0.0510 -6.0876 32 1 4.7081 0.3901 -6.3403 33 1 4.2709 -1.2935 -5.9616 34 1 4.9896 1.5497 -2.9673 35 1 5.1028 1.9488 -4.6980 36 1 3.5376 2.0659 -3.8582 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228663369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:26 Heat of formation + Delta-G solvation = -28.066626 kcal Electronic energy + Delta-G solvation = -16220.180861 eV Core-core repulsion = 13704.706072 eV Total energy + Delta-G solvation = -2515.474788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26362 -38.59078 -36.94879 -34.78236 -32.45233 -30.17692 -28.30426 -27.67584 -27.16770 -25.46294 -22.51409 -20.47895 -19.38543 -18.96675 -17.97879 -17.32539 -16.31312 -16.11060 -15.15776 -15.06794 -14.85033 -14.55859 -14.12295 -14.11024 -13.80197 -13.56937 -13.50482 -13.13390 -13.04312 -12.80230 -12.65910 -12.44821 -12.09728 -12.04469 -11.59706 -11.38388 -11.10315 -10.82587 -10.70213 -10.30778 -9.37080 -8.37858 -6.42416 1.23163 1.32840 1.41810 1.64995 2.24855 2.25287 2.86094 2.97310 3.63084 3.73997 3.90080 4.09059 4.23721 4.41389 4.43413 4.55958 4.58714 4.68622 4.77824 4.85464 4.87005 4.95479 5.01493 5.06271 5.09513 5.12826 5.15991 5.32205 5.35137 5.47396 5.59254 5.73562 6.19040 6.59408 6.76687 7.19970 7.41780 8.78437 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041786 B = 0.007499 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.924986 B = 3733.091701 C = 3855.600080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.231 3.769 3 H 0.029 0.971 4 C -0.527 4.527 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.943 3.057 9 H -0.252 1.252 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.521 3.479 15 O -0.591 6.591 16 C -0.191 4.191 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.097 4.097 20 C -0.107 4.107 21 C -0.099 4.099 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.269 0.731 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -1.977 -17.927 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.127 3.873 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.579 5.579 8 Si 0.770 3.230 9 H -0.177 1.177 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.326 5.326 13 C -0.056 4.056 14 C 0.311 3.689 15 O -0.473 6.473 16 C -0.212 4.212 17 H 0.169 0.831 18 C -0.177 4.177 19 C -0.097 4.097 20 C -0.164 4.164 21 C -0.156 4.156 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.071 -1.412 -17.617 17.674 hybrid contribution -0.338 0.584 1.258 1.428 sum -0.409 -0.828 -16.360 16.386 Atomic orbital electron populations 1.22309 0.96608 1.02306 0.99891 1.18939 0.91825 0.93337 0.83166 0.95317 1.21372 1.31733 1.13058 0.90339 0.93956 1.25665 0.97188 0.99544 0.95285 1.70002 1.47151 1.42164 0.98598 0.85952 0.79930 0.80075 0.77076 1.17708 1.22166 1.18907 1.47923 1.49595 1.13363 1.21694 1.21805 1.01193 0.80196 1.02399 1.20485 0.77661 0.86298 0.84429 1.90611 1.59518 1.19097 1.78062 1.22458 0.96730 1.05373 0.96634 0.83116 1.23273 0.91167 1.01442 1.01781 1.21744 1.00568 0.93154 0.94259 1.21382 1.02674 1.02930 0.89380 1.21249 1.00763 0.93698 0.99887 0.92563 0.90984 0.93985 0.92214 0.93841 0.88131 0.90857 0.90914 0.84537 0.91673 0.90742 0.90308 0.94810 0.91156 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.48 8.65 71.98 0.62 -5.86 16 2 C 0.23 11.45 2.23 44.25 0.10 11.55 16 3 H 0.03 1.62 5.96 -2.39 -0.01 1.60 16 4 C -0.53 -30.42 8.95 25.60 0.23 -30.19 16 5 H 0.04 2.67 7.89 -2.91 -0.02 2.65 16 6 C 0.02 1.28 5.45 84.65 0.46 1.74 16 7 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 8 Si 0.94 46.00 24.37 68.60 1.67 47.67 16 9 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 12 N -0.60 -24.92 2.75 -826.78 -2.28 -27.19 16 13 C 0.09 2.75 9.51 127.77 1.21 3.97 16 14 C 0.52 21.16 7.44 87.66 0.65 21.81 16 15 O -0.59 -28.59 12.43 -3.02 -0.04 -28.63 16 16 C -0.19 -5.39 5.00 -11.54 -0.06 -5.44 16 17 H 0.15 3.20 6.44 -2.39 -0.02 3.18 16 18 C -0.14 -3.46 9.53 30.62 0.29 -3.17 16 19 C -0.10 -2.39 2.70 -52.16 -0.14 -2.53 16 20 C -0.11 -1.72 9.85 71.98 0.71 -1.02 16 21 C -0.10 -2.96 8.09 71.98 0.58 -2.38 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.07 2.78 6.66 -2.39 -0.02 2.76 16 24 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 2.26 6.00 -2.39 -0.01 2.25 16 28 H 0.07 2.30 6.43 -2.38 -0.02 2.28 16 29 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 30 H 0.14 2.36 8.05 -2.39 -0.02 2.35 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.05 7.92 -2.39 -0.02 1.03 16 33 H 0.08 0.96 7.90 -2.39 -0.02 0.94 16 34 H 0.03 1.20 7.02 -2.39 -0.02 1.18 16 35 H 0.07 1.66 7.92 -2.39 -0.02 1.64 16 36 H 0.04 1.52 7.26 -2.39 -0.02 1.50 16 Total: -1.00 -72.73 280.93 5.30 -67.43 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.98 Total: 10.54 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.66 Total: -11.51 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.98 Total: -85.50 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -72.73 5.30 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228663369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.365 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds