Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 C 1.34768 * 119.99967 * 240.00033 * 12 2 1 15 15 O 1.21282 * 120.00139 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99974 * 179.97438 * 14 12 2 17 17 H 1.08998 * 115.54535 * 34.42006 * 16 14 12 18 18 C 1.52998 * 117.50177 * 248.74592 * 16 14 12 19 19 C 1.53001 * 117.49836 * 180.08689 * 16 14 12 20 20 C 1.53004 * 117.49616 * 214.97918 * 19 16 14 21 21 C 1.52997 * 117.50179 * 359.97438 * 19 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 27 27 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 28 28 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 29 29 H 1.08997 * 117.49441 * 359.97438 * 18 16 14 30 30 H 1.08994 * 117.50031 * 144.99305 * 18 16 14 31 31 H 1.09007 * 109.46923 * 60.00265 * 20 19 16 32 32 H 1.09002 * 109.46998 * 179.97438 * 20 19 16 33 33 H 1.08996 * 109.47359 * 299.99870 * 20 19 16 34 34 H 1.09006 * 109.46735 * 60.00282 * 21 19 16 35 35 H 1.08998 * 109.47304 * 180.02562 * 21 19 16 36 36 H 1.09002 * 109.47522 * 300.00676 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2950 -0.7459 3.3141 17 1 3.5229 -1.8041 3.1860 18 6 2.7296 -0.3034 4.6651 19 6 4.1686 0.0526 4.2836 20 6 5.2948 -0.6955 4.9998 21 6 4.4663 1.5109 3.9293 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 0.7092 1.1618 -3.4843 26 1 2.4157 -2.7377 0.9716 27 1 1.6238 -2.2853 2.5002 28 1 0.6904 -2.3002 0.9846 29 1 1.9949 0.5018 4.6637 30 1 2.5854 -1.0704 5.4259 31 1 5.9844 -1.1064 4.2624 32 1 5.8303 -0.0069 5.6534 33 1 4.8724 -1.5061 5.5936 34 1 3.5309 2.0663 3.8602 35 1 5.0948 1.9519 4.7030 36 1 4.9856 1.5535 2.9718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228663377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -16.845539 kcal Electronic energy + Delta-G solvation = -16155.328017 eV Core-core repulsion = 13640.339811 eV Total energy + Delta-G solvation = -2514.988206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68815 -37.05700 -35.07176 -32.80184 -29.86937 -28.75944 -27.23090 -26.03691 -25.19243 -23.81813 -20.81600 -19.11048 -17.86155 -16.61955 -16.24754 -15.23264 -14.52703 -14.32721 -13.99937 -13.60738 -13.33103 -12.80399 -12.54209 -12.25860 -12.20689 -11.83500 -11.62032 -11.50591 -11.38335 -11.05844 -10.98802 -10.77776 -10.64236 -10.23069 -10.13738 -9.91854 -9.51349 -9.12722 -8.66866 -8.38797 -7.50986 -6.04843 -4.12640 3.20684 3.27607 3.34623 3.38101 3.93484 4.12653 4.42186 4.88162 4.93221 5.08607 5.25764 5.26476 5.50281 5.71373 5.76237 5.79231 5.85635 6.02989 6.12372 6.14781 6.20307 6.26781 6.35598 6.43901 6.78841 6.84702 6.86079 7.09337 7.50083 7.56810 7.75238 8.05252 8.23480 8.60815 8.87307 9.15546 9.54143 11.00409 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039680 B = 0.006989 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.480274 B = 4005.310067 C = 4056.808011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.591 5.591 13 C 0.089 3.911 14 C 0.532 3.468 15 O -0.548 6.548 16 C -0.181 4.181 17 H 0.116 0.884 18 C -0.151 4.151 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.100 4.100 22 H 0.029 0.971 23 H 0.011 0.989 24 H 0.093 0.907 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 -4.990 12.409 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.322 5.322 13 C -0.055 4.055 14 C 0.319 3.681 15 O -0.427 6.427 16 C -0.202 4.202 17 H 0.134 0.866 18 C -0.189 4.189 19 C -0.101 4.101 20 C -0.171 4.171 21 C -0.157 4.157 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.212 -4.262 12.121 13.244 hybrid contribution 0.168 -0.801 -1.011 1.301 sum 3.380 -5.064 11.110 12.668 Atomic orbital electron populations 1.22090 0.98326 0.99307 1.00777 1.18922 0.90782 0.94526 0.80021 0.91913 1.21336 1.31673 1.12905 0.90353 0.92353 1.24898 0.95007 0.94985 0.98953 1.69881 1.36524 1.22613 1.23699 0.86497 0.79181 0.79299 0.82429 1.20625 1.21096 1.19969 1.48170 1.48882 1.11642 1.23500 1.21525 1.01315 0.83310 0.99370 1.19483 0.78796 0.86521 0.83349 1.90633 1.58319 1.17032 1.76761 1.22463 1.06602 1.00210 0.90948 0.86644 1.23151 0.96935 1.03188 0.95614 1.21545 0.91598 0.96944 1.00000 1.21368 0.96904 0.99321 0.99462 1.21316 1.02136 0.91593 1.00625 0.95149 0.97032 0.88843 0.92724 0.93570 0.92848 0.91051 0.88539 0.88484 0.92149 0.91987 0.92609 0.91662 0.93968 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.25 16 2 C 0.26 6.73 2.64 -69.08 -0.18 6.55 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.47 8.37 -34.44 -0.29 -14.76 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.59 -13.02 2.75 -175.26 -0.48 -13.51 16 13 C 0.09 1.55 9.25 59.85 0.55 2.11 16 14 C 0.53 11.32 7.44 -10.99 -0.08 11.24 16 15 O -0.55 -13.47 12.43 5.56 0.07 -13.40 16 16 C -0.18 -2.89 4.51 -91.77 -0.41 -3.30 16 17 H 0.12 1.63 7.27 -51.93 -0.38 1.26 16 18 C -0.15 -2.03 9.53 -26.70 -0.25 -2.28 16 19 C -0.10 -1.43 2.70 -154.47 -0.42 -1.84 16 20 C -0.11 -1.25 9.85 37.16 0.37 -0.88 16 21 C -0.10 -1.57 8.09 37.16 0.30 -1.27 16 22 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.75 6.64 -51.92 -0.34 0.41 16 28 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 29 H 0.10 1.38 8.05 -51.93 -0.42 0.97 16 30 H 0.10 1.03 8.05 -51.93 -0.42 0.62 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.06 1.14 7.02 -51.93 -0.36 0.77 16 35 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 36 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -30.61 288.46 -6.33 -36.94 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.69 Total: 0.20 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.18 Total: -6.02 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.15 Total: -38.39 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.61 -6.33 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228663377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.095 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds