Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 C 1.34768 * 119.99967 * 240.00033 * 12 2 1 15 15 O 1.21282 * 120.00139 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99974 * 179.97438 * 14 12 2 17 17 H 1.08998 * 115.54535 * 34.42006 * 16 14 12 18 18 C 1.52998 * 117.50177 * 248.74592 * 16 14 12 19 19 C 1.53001 * 117.49836 * 180.08689 * 16 14 12 20 20 C 1.53004 * 117.49616 * 214.97918 * 19 16 14 21 21 C 1.52997 * 117.50179 * 359.97438 * 19 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 27 27 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 28 28 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 29 29 H 1.08997 * 117.49441 * 359.97438 * 18 16 14 30 30 H 1.08994 * 117.50031 * 144.99305 * 18 16 14 31 31 H 1.09007 * 109.46923 * 60.00265 * 20 19 16 32 32 H 1.09002 * 109.46998 * 179.97438 * 20 19 16 33 33 H 1.08996 * 109.47359 * 299.99870 * 20 19 16 34 34 H 1.09006 * 109.46735 * 60.00282 * 21 19 16 35 35 H 1.08998 * 109.47304 * 180.02562 * 21 19 16 36 36 H 1.09002 * 109.47522 * 300.00676 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2950 -0.7459 3.3141 17 1 3.5229 -1.8041 3.1860 18 6 2.7296 -0.3034 4.6651 19 6 4.1686 0.0526 4.2836 20 6 5.2948 -0.6955 4.9998 21 6 4.4663 1.5109 3.9293 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 0.7092 1.1618 -3.4843 26 1 2.4157 -2.7377 0.9716 27 1 1.6238 -2.2853 2.5002 28 1 0.6904 -2.3002 0.9846 29 1 1.9949 0.5018 4.6637 30 1 2.5854 -1.0704 5.4259 31 1 5.9844 -1.1064 4.2624 32 1 5.8303 -0.0069 5.6534 33 1 4.8724 -1.5061 5.5936 34 1 3.5309 2.0663 3.8602 35 1 5.0948 1.9519 4.7030 36 1 4.9856 1.5535 2.9718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228663377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -35.361820 kcal Electronic energy + Delta-G solvation = -16156.130943 eV Core-core repulsion = 13640.339811 eV Total energy + Delta-G solvation = -2515.791132 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18419 -38.48870 -36.85211 -34.79290 -31.65260 -30.06535 -28.30685 -27.57911 -27.29833 -25.28191 -22.48731 -20.48518 -19.34267 -18.48845 -18.00055 -17.05557 -16.21225 -15.97648 -15.30676 -14.95090 -14.57039 -14.46345 -14.09967 -13.74751 -13.49408 -13.45685 -13.06885 -13.03312 -12.81594 -12.70958 -12.64934 -12.48913 -12.20594 -12.15547 -12.03026 -11.20730 -11.08093 -10.70793 -10.55603 -10.23258 -9.29160 -8.16100 -6.33242 1.39125 1.40967 1.50941 1.70962 2.31432 2.48469 2.87678 3.11149 3.67347 3.75282 3.93080 4.20770 4.24882 4.48414 4.67019 4.71603 4.79034 4.84567 4.85981 4.86302 5.01408 5.01739 5.05946 5.09629 5.13008 5.15501 5.35349 5.44553 5.58561 5.63206 5.68673 6.03990 6.15330 6.75100 6.88227 7.32442 7.53384 8.88123 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039680 B = 0.006989 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.480274 B = 4005.310067 C = 4056.808011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.601 5.601 13 C 0.086 3.914 14 C 0.517 3.483 15 O -0.596 6.596 16 C -0.194 4.194 17 H 0.143 0.857 18 C -0.128 4.128 19 C -0.103 4.103 20 C -0.107 4.107 21 C -0.097 4.097 22 H 0.048 0.952 23 H 0.018 0.982 24 H 0.067 0.933 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -7.553 14.059 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.025 0.975 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.332 5.332 13 C -0.056 4.056 14 C 0.307 3.693 15 O -0.478 6.478 16 C -0.215 4.215 17 H 0.160 0.840 18 C -0.165 4.165 19 C -0.103 4.103 20 C -0.164 4.164 21 C -0.154 4.154 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.748 -6.862 13.796 15.857 hybrid contribution 0.006 0.082 -1.498 1.500 sum 3.754 -6.780 12.298 14.537 Atomic orbital electron populations 1.21868 0.97205 1.00078 0.99845 1.18508 0.91589 0.92143 0.81863 0.97528 1.21582 1.31899 1.12998 0.91286 0.92368 1.25767 0.95081 0.95648 1.02091 1.70026 1.37396 1.23879 1.24449 0.85435 0.78828 0.78286 0.78338 1.19077 1.21017 1.19657 1.48203 1.49121 1.13416 1.22411 1.21758 1.01186 0.80491 1.02160 1.20523 0.77913 0.86284 0.84619 1.90613 1.59801 1.19393 1.78016 1.22411 1.08788 1.01029 0.89237 0.83969 1.23286 0.95672 1.03288 0.94247 1.21735 0.93519 0.95670 0.99405 1.21379 0.95642 0.99932 0.99463 1.21224 1.00845 0.93469 0.99896 0.93337 0.96250 0.91416 0.92611 0.92980 0.88769 0.91317 0.90133 0.84221 0.92374 0.90670 0.90038 0.94400 0.91130 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.92 16 2 C 0.26 14.14 2.64 44.24 0.12 14.26 16 3 H 0.01 0.44 6.90 -2.39 -0.02 0.42 16 4 C -0.54 -30.32 8.37 25.60 0.21 -30.10 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -54.20 11.32 21.45 0.24 -53.96 16 8 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.60 -26.65 2.75 -826.80 -2.28 -28.93 16 13 C 0.09 2.85 9.25 127.77 1.18 4.03 16 14 C 0.52 22.35 7.44 87.66 0.65 23.00 16 15 O -0.60 -31.00 12.43 -3.04 -0.04 -31.03 16 16 C -0.19 -5.77 4.51 -11.54 -0.05 -5.82 16 17 H 0.14 3.46 7.27 -2.39 -0.02 3.44 16 18 C -0.13 -3.00 9.53 30.62 0.29 -2.71 16 19 C -0.10 -2.69 2.70 -52.16 -0.14 -2.83 16 20 C -0.11 -1.93 9.85 71.98 0.71 -1.22 16 21 C -0.10 -3.09 8.09 71.98 0.58 -2.51 16 22 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 25 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.32 6.64 -2.38 -0.02 2.30 16 28 H 0.07 2.28 6.43 -2.39 -0.02 2.27 16 29 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 30 H 0.14 2.15 8.05 -2.39 -0.02 2.13 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.17 7.92 -2.39 -0.02 1.16 16 33 H 0.08 1.08 7.90 -2.39 -0.02 1.06 16 34 H 0.04 1.37 7.02 -2.38 -0.02 1.36 16 35 H 0.07 1.77 7.92 -2.39 -0.02 1.75 16 36 H 0.03 1.35 7.26 -2.39 -0.02 1.33 16 Total: -1.00 -70.49 288.46 5.65 -64.84 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.05 Total: 11.72 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.65 Total: -8.62 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.03 Total: -82.88 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.04 Total: -31.03 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.49 5.65 -64.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228663377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.481 kcal (2) G-P(sol) polarization free energy of solvation -70.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds