Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.52542 * 2 1 4 4 C 1.53045 * 109.50008 * 239.91935 * 2 1 3 5 5 C 1.53040 * 109.53587 * 178.68231 * 4 2 1 6 6 H 1.09008 * 109.49149 * 181.31415 * 5 4 2 7 7 C 1.53000 * 109.49816 * 301.40962 * 5 4 2 8 8 C 1.52757 * 109.38587 * 61.24239 * 5 4 2 9 9 H 1.09008 * 109.43247 * 65.41705 * 8 5 4 10 10 C 1.52999 * 109.51152 * 185.70085 * 8 5 4 11 11 N 1.46930 * 109.00606 * 305.58354 * 8 5 4 12 12 C 1.34777 * 120.63045 * 233.58244 * 11 8 5 13 13 O 1.21686 * 119.99886 * 353.81867 * 12 11 8 14 14 C 1.46372 * 119.99853 * 173.82063 * 12 11 8 15 15 H 1.08002 * 120.00076 * 5.16481 * 14 12 11 16 16 C 1.40049 * 120.00048 * 185.16199 * 14 12 11 17 17 N 1.30678 * 119.99744 * 5.08332 * 16 14 12 18 18 Si 1.86801 * 120.00328 * 185.08158 * 16 14 12 19 19 H 1.48499 * 109.46721 * 84.99878 * 18 16 14 20 20 H 1.48495 * 109.47235 * 205.00231 * 18 16 14 21 21 H 1.48500 * 109.46632 * 325.00172 * 18 16 14 22 22 C 1.46929 * 118.73633 * 53.31170 * 11 8 5 23 23 H 1.09001 * 109.47132 * 299.91867 * 1 2 3 24 24 H 1.09000 * 109.46547 * 59.91849 * 1 2 3 25 25 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.45793 * 298.70568 * 4 2 1 27 27 H 1.09000 * 109.45466 * 58.66378 * 4 2 1 28 28 H 1.08996 * 109.47115 * 60.01108 * 7 5 4 29 29 H 1.09008 * 109.46943 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.47464 * 300.00308 * 7 5 4 31 31 H 1.09000 * 109.47333 * 185.58470 * 10 8 5 32 32 H 1.08994 * 109.47068 * 305.58537 * 10 8 5 33 33 H 1.09000 * 109.47176 * 65.58711 * 10 8 5 34 34 H 0.97001 * 119.99797 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.58560 * 66.42856 * 22 11 8 36 36 H 1.09002 * 109.58351 * 186.85516 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2484 5 6 3.5709 -0.6949 -1.2659 6 1 3.9335 -1.1897 -2.1671 7 6 4.0552 0.7563 -1.2493 8 6 4.1056 -1.4215 -0.0332 9 1 3.8413 -2.4774 -0.0915 10 6 5.6272 -1.2732 0.0275 11 7 3.5047 -0.8290 1.1696 12 6 4.2812 -0.3855 2.1779 13 8 5.4829 -0.5746 2.1489 14 6 3.6790 0.3237 3.3079 15 1 2.6053 0.4188 3.3756 16 6 4.4951 0.8790 4.3014 17 7 5.7949 0.8512 4.1702 18 14 3.7255 1.6592 5.8142 19 1 3.4504 0.6088 6.8272 20 1 4.6603 2.6630 6.3833 21 1 2.4542 2.3261 5.4346 22 6 2.0413 -0.7238 1.2496 23 1 -0.3633 0.5126 0.8907 24 1 -0.3632 0.5151 -0.8893 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6968 -1.7573 -1.2353 27 1 1.6582 -0.2244 -2.1389 28 1 3.6935 1.2497 -0.3472 29 1 5.1450 0.7758 -1.2622 30 1 3.6724 1.2772 -2.1268 31 1 6.0182 -1.8729 0.8494 32 1 6.0632 -1.6151 -0.9112 33 1 5.8841 -0.2261 0.1874 34 1 6.3602 1.2361 4.8581 35 1 1.6053 -1.7216 1.2980 36 1 1.7638 -0.1579 2.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229408463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -39.464205 kcal Electronic energy + Delta-G solvation = -16865.242419 eV Core-core repulsion = 14349.273394 eV Total energy + Delta-G solvation = -2515.969025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39067 -36.22211 -33.61484 -32.50812 -31.99808 -28.77925 -26.60772 -25.86797 -24.86625 -23.02283 -20.89535 -19.57733 -17.86723 -16.36816 -15.54885 -15.05660 -14.41461 -14.21590 -13.98329 -13.57934 -13.27311 -12.65641 -12.35411 -12.10141 -11.55200 -11.47981 -11.39088 -11.24685 -11.12723 -11.09128 -10.80121 -10.65212 -10.31768 -10.22736 -10.12166 -9.94815 -9.84242 -9.49231 -8.81162 -7.12111 -7.03282 -6.12078 -4.60367 3.14686 3.21561 3.23424 4.10397 4.56446 4.62244 5.14187 5.24092 5.27236 5.49102 5.69342 5.79813 5.84590 5.98312 6.01473 6.07952 6.14386 6.15693 6.23776 6.37403 6.38423 6.41714 6.52678 6.61380 6.65788 6.71567 6.78531 6.96602 7.18865 7.47988 7.51388 7.73796 8.21920 8.42917 9.05705 9.51956 10.61547 10.81588 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.010573 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.621910 B = 2647.584634 C = 3306.810856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 H 0.076 0.924 4 C -0.103 4.103 5 C -0.103 4.103 6 H 0.064 0.936 7 C -0.142 4.142 8 C 0.156 3.844 9 H 0.041 0.959 10 C -0.125 4.125 11 N -0.636 5.636 12 C 0.562 3.438 13 O -0.569 6.569 14 C -0.547 4.547 15 H 0.071 0.929 16 C 0.090 3.910 17 N -0.769 5.769 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.266 1.266 22 C 0.127 3.873 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.267 0.733 35 H 0.038 0.962 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -0.971 -7.581 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.094 0.906 4 C -0.141 4.141 5 C -0.123 4.123 6 H 0.082 0.918 7 C -0.199 4.199 8 C 0.052 3.948 9 H 0.059 0.941 10 C -0.182 4.182 11 N -0.374 5.374 12 C 0.367 3.633 13 O -0.452 6.452 14 C -0.584 4.584 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.397 5.397 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.190 1.190 22 C 0.003 3.997 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.048 -1.029 -7.503 10.346 hybrid contribution -0.588 0.389 0.659 0.965 sum -7.637 -0.640 -6.844 10.274 Atomic orbital electron populations 1.21759 0.95701 1.01282 1.01256 1.21617 0.94609 1.00872 0.96108 0.90556 1.21546 0.95354 0.99877 0.97287 1.21471 0.95195 0.97314 0.98271 0.91785 1.21835 1.01132 0.95715 1.01213 1.20754 0.94553 0.94392 0.85130 0.94124 1.22158 0.93131 1.04505 0.98361 1.48163 1.04929 1.66118 1.18170 1.18118 0.85741 0.78249 0.81144 1.90607 1.14995 1.60669 1.78908 1.21021 0.93718 1.36947 1.06676 0.91136 1.25682 0.94420 0.94386 0.98447 1.69994 1.04019 1.34021 1.31704 0.86472 0.79651 0.79194 0.81951 1.19691 1.20583 1.19020 1.21466 0.82311 0.98357 0.97583 0.92656 0.93227 0.93067 0.92641 0.92877 0.91566 0.92657 0.94189 0.90492 0.96803 0.91096 0.92172 0.94374 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 37.16 0.34 -1.46 16 2 C -0.11 -1.77 2.53 -90.50 -0.23 -2.00 16 3 H 0.08 1.32 6.34 -51.93 -0.33 0.99 16 4 C -0.10 -1.52 4.71 -26.69 -0.13 -1.64 16 5 C -0.10 -1.71 2.80 -90.72 -0.25 -1.97 16 6 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 7 C -0.14 -2.46 8.19 37.16 0.30 -2.16 16 8 C 0.16 3.14 3.18 -67.82 -0.22 2.93 16 9 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 10 C -0.12 -2.72 6.89 37.16 0.26 -2.46 16 11 N -0.64 -14.40 2.42 -167.12 -0.40 -14.80 16 12 C 0.56 15.60 7.41 -12.99 -0.10 15.50 16 13 O -0.57 -17.46 10.65 5.20 0.06 -17.41 16 14 C -0.55 -15.14 8.88 -35.63 -0.32 -15.46 16 15 H 0.07 1.80 5.64 -52.49 -0.30 1.50 16 16 C 0.09 2.48 5.49 -17.36 -0.10 2.39 16 17 N -0.77 -22.67 11.87 55.55 0.66 -22.01 16 18 Si 0.90 20.03 29.56 -169.99 -5.03 15.00 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 C 0.13 2.41 5.64 -3.71 -0.02 2.39 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 29 H 0.05 1.00 6.46 -51.92 -0.34 0.67 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.90 6.54 -51.93 -0.34 1.56 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 1.73 5.48 -51.93 -0.28 1.45 16 34 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.83 5.30 -51.93 -0.28 1.56 16 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -31.03 272.19 -6.60 -37.63 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.53 Total: 1.44 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.45 Total: -3.95 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.26 Total: -36.82 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.06 Total: -17.41 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.03 -6.60 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229408463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.836 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds