Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.52542 * 2 1 4 4 C 1.53045 * 109.50008 * 239.91935 * 2 1 3 5 5 C 1.53040 * 109.53587 * 178.68231 * 4 2 1 6 6 H 1.09008 * 109.49149 * 181.31415 * 5 4 2 7 7 C 1.53000 * 109.49816 * 301.40962 * 5 4 2 8 8 C 1.52757 * 109.38587 * 61.24239 * 5 4 2 9 9 H 1.09008 * 109.43247 * 65.41705 * 8 5 4 10 10 C 1.52999 * 109.51152 * 185.70085 * 8 5 4 11 11 N 1.46930 * 109.00606 * 305.58354 * 8 5 4 12 12 C 1.34777 * 120.63045 * 233.58244 * 11 8 5 13 13 O 1.21686 * 119.99886 * 353.81867 * 12 11 8 14 14 C 1.46372 * 119.99853 * 173.82063 * 12 11 8 15 15 H 1.08002 * 120.00076 * 5.16481 * 14 12 11 16 16 C 1.40049 * 120.00048 * 185.16199 * 14 12 11 17 17 N 1.30678 * 119.99744 * 5.08332 * 16 14 12 18 18 Si 1.86801 * 120.00328 * 185.08158 * 16 14 12 19 19 H 1.48499 * 109.46721 * 84.99878 * 18 16 14 20 20 H 1.48495 * 109.47235 * 205.00231 * 18 16 14 21 21 H 1.48500 * 109.46632 * 325.00172 * 18 16 14 22 22 C 1.46929 * 118.73633 * 53.31170 * 11 8 5 23 23 H 1.09001 * 109.47132 * 299.91867 * 1 2 3 24 24 H 1.09000 * 109.46547 * 59.91849 * 1 2 3 25 25 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.45793 * 298.70568 * 4 2 1 27 27 H 1.09000 * 109.45466 * 58.66378 * 4 2 1 28 28 H 1.08996 * 109.47115 * 60.01108 * 7 5 4 29 29 H 1.09008 * 109.46943 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.47464 * 300.00308 * 7 5 4 31 31 H 1.09000 * 109.47333 * 185.58470 * 10 8 5 32 32 H 1.08994 * 109.47068 * 305.58537 * 10 8 5 33 33 H 1.09000 * 109.47176 * 65.58711 * 10 8 5 34 34 H 0.97001 * 119.99797 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.58560 * 66.42856 * 22 11 8 36 36 H 1.09002 * 109.58351 * 186.85516 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2484 5 6 3.5709 -0.6949 -1.2659 6 1 3.9335 -1.1897 -2.1671 7 6 4.0552 0.7563 -1.2493 8 6 4.1056 -1.4215 -0.0332 9 1 3.8413 -2.4774 -0.0915 10 6 5.6272 -1.2732 0.0275 11 7 3.5047 -0.8290 1.1696 12 6 4.2812 -0.3855 2.1779 13 8 5.4829 -0.5746 2.1489 14 6 3.6790 0.3237 3.3079 15 1 2.6053 0.4188 3.3756 16 6 4.4951 0.8790 4.3014 17 7 5.7949 0.8512 4.1702 18 14 3.7255 1.6592 5.8142 19 1 3.4504 0.6088 6.8272 20 1 4.6603 2.6630 6.3833 21 1 2.4542 2.3261 5.4346 22 6 2.0413 -0.7238 1.2496 23 1 -0.3633 0.5126 0.8907 24 1 -0.3632 0.5151 -0.8893 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6968 -1.7573 -1.2353 27 1 1.6582 -0.2244 -2.1389 28 1 3.6935 1.2497 -0.3472 29 1 5.1450 0.7758 -1.2622 30 1 3.6724 1.2772 -2.1268 31 1 6.0182 -1.8729 0.8494 32 1 6.0632 -1.6151 -0.9112 33 1 5.8841 -0.2261 0.1874 34 1 6.3602 1.2361 4.8581 35 1 1.6053 -1.7216 1.2980 36 1 1.7638 -0.1579 2.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229408463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -58.726925 kcal Electronic energy + Delta-G solvation = -16866.077713 eV Core-core repulsion = 14349.273394 eV Total energy + Delta-G solvation = -2516.804319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01660 -38.06965 -35.18646 -34.40610 -33.80525 -30.35130 -28.27909 -27.53869 -26.38913 -24.59836 -22.49743 -21.20065 -19.45638 -18.28956 -17.47471 -16.66486 -16.08421 -15.75027 -15.62082 -14.93554 -14.72055 -14.50711 -13.90834 -13.63638 -13.13688 -13.10059 -12.96823 -12.82660 -12.70852 -12.65625 -12.42540 -12.19509 -12.03350 -11.99326 -11.60003 -11.47918 -11.23821 -10.94310 -10.85450 -9.20596 -8.86621 -8.19480 -6.77008 1.38247 1.40126 1.53205 2.24266 2.51741 2.90579 3.65555 3.84873 3.96679 4.03727 4.14886 4.32587 4.52244 4.60838 4.66751 4.74346 4.80792 4.83504 4.89751 4.96357 5.03410 5.08785 5.14433 5.20899 5.28768 5.40667 5.43711 5.45920 5.49268 5.65200 5.72326 5.85762 6.22370 6.54776 6.93469 7.54229 8.55826 8.74891 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.010573 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.621910 B = 2647.584634 C = 3306.810856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.056 0.944 4 C -0.097 4.097 5 C -0.097 4.097 6 H 0.093 0.907 7 C -0.137 4.137 8 C 0.148 3.852 9 H 0.054 0.946 10 C -0.111 4.111 11 N -0.638 5.638 12 C 0.544 3.456 13 O -0.612 6.612 14 C -0.574 4.574 15 H 0.086 0.914 16 C 0.033 3.967 17 N -0.822 5.822 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.250 1.250 22 C 0.122 3.878 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.272 0.728 35 H 0.054 0.946 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 -1.002 -8.825 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.075 0.925 4 C -0.135 4.135 5 C -0.116 4.116 6 H 0.111 0.889 7 C -0.194 4.194 8 C 0.044 3.956 9 H 0.072 0.928 10 C -0.168 4.168 11 N -0.375 5.375 12 C 0.350 3.650 13 O -0.499 6.499 14 C -0.610 4.610 15 H 0.104 0.896 16 C -0.182 4.182 17 N -0.452 5.452 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.173 1.173 22 C -0.002 4.002 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.828 -1.075 -8.788 13.228 hybrid contribution 0.288 0.345 0.977 1.075 sum -9.540 -0.730 -7.811 12.352 Atomic orbital electron populations 1.21700 0.92848 1.02479 1.02229 1.21535 0.96848 0.99312 0.94947 0.92531 1.21541 0.93348 1.00979 0.97596 1.21455 0.96938 0.96101 0.97114 0.88923 1.21769 1.00002 0.96665 1.00944 1.20986 0.93181 0.95554 0.85855 0.92814 1.21869 0.95077 1.01429 0.98418 1.48031 1.06369 1.65176 1.17876 1.18455 0.85682 0.78465 0.82429 1.90588 1.16850 1.62255 1.80197 1.21529 0.94765 1.37318 1.07432 0.89579 1.26854 0.94732 0.94517 1.02057 1.70166 1.06087 1.35622 1.33311 0.85187 0.79027 0.78217 0.76853 1.18816 1.19971 1.17300 1.21664 0.80069 0.99480 0.98941 0.92839 0.91206 0.91726 0.91121 0.90008 0.94870 0.94446 0.91088 0.94439 0.93327 0.94638 0.91859 0.92743 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.20 71.98 0.66 -2.26 16 2 C -0.11 -3.11 2.53 -10.71 -0.03 -3.14 16 3 H 0.06 1.88 6.34 -2.38 -0.02 1.87 16 4 C -0.10 -2.46 4.71 30.62 0.14 -2.32 16 5 C -0.10 -2.97 2.80 -10.86 -0.03 -3.00 16 6 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 7 C -0.14 -4.61 8.19 71.98 0.59 -4.02 16 8 C 0.15 5.87 3.18 44.83 0.14 6.01 16 9 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 10 C -0.11 -4.98 6.89 71.98 0.50 -4.49 16 11 N -0.64 -29.31 2.42 -800.86 -1.94 -31.24 16 12 C 0.54 31.58 7.41 86.36 0.64 32.22 16 13 O -0.61 -39.93 10.65 -4.30 -0.05 -39.98 16 14 C -0.57 -32.74 8.88 24.83 0.22 -32.52 16 15 H 0.09 4.46 5.64 -2.91 -0.02 4.45 16 16 C 0.03 1.87 5.49 85.30 0.47 2.34 16 17 N -0.82 -50.65 11.87 21.84 0.26 -50.39 16 18 Si 0.99 41.64 29.56 68.60 2.03 43.67 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 22 C 0.12 4.50 5.64 86.36 0.49 4.99 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.32 5.97 -2.39 -0.01 1.31 16 29 H 0.04 1.36 6.46 -2.38 -0.02 1.35 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.94 6.54 -2.39 -0.02 1.93 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.03 1.82 5.48 -2.39 -0.01 1.81 16 34 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.95 5.30 -2.39 -0.01 2.93 16 Total: -1.00 -71.95 272.19 5.15 -66.80 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.06 Total: 17.33 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.79 Total: -6.19 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.68 Total: -81.63 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.05 Total: -39.98 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -71.95 5.15 -66.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229408463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.068 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds