Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49313 * 2 1 4 4 C 1.53037 * 109.49979 * 239.90744 * 2 1 3 5 5 C 1.53048 * 109.53594 * 178.68228 * 4 2 1 6 6 H 1.08993 * 109.49565 * 301.41106 * 5 4 2 7 7 C 1.52994 * 109.51978 * 181.32935 * 5 4 2 8 8 C 1.53187 * 109.31241 * 61.36025 * 5 4 2 9 9 H 1.09009 * 109.59015 * 65.15507 * 8 5 4 10 10 C 1.53002 * 109.58644 * 185.57813 * 8 5 4 11 11 N 1.46928 * 108.78079 * 305.36382 * 8 5 4 12 12 C 1.34774 * 120.63397 * 233.63473 * 11 8 5 13 13 O 1.21687 * 119.99864 * 354.19914 * 12 11 8 14 14 C 1.46368 * 119.99766 * 174.20511 * 12 11 8 15 15 H 1.08003 * 120.00534 * 5.12453 * 14 12 11 16 16 C 1.40055 * 119.99815 * 185.12326 * 14 12 11 17 17 N 1.30676 * 119.99717 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00064 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47502 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47350 * 120.00133 * 18 16 14 21 21 H 1.48504 * 109.47276 * 239.99983 * 18 16 14 22 22 C 1.46922 * 118.73279 * 53.60771 * 11 8 5 23 23 H 1.08997 * 109.47463 * 299.93096 * 1 2 3 24 24 H 1.09006 * 109.46768 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47037 * 59.93878 * 1 2 3 26 26 H 1.09006 * 109.45552 * 298.69603 * 4 2 1 27 27 H 1.08999 * 109.46482 * 58.65869 * 4 2 1 28 28 H 1.09001 * 109.47259 * 300.14210 * 7 5 4 29 29 H 1.08997 * 109.47766 * 60.14620 * 7 5 4 30 30 H 1.09006 * 109.46839 * 180.14430 * 7 5 4 31 31 H 1.08996 * 109.47221 * 184.99921 * 10 8 5 32 32 H 1.09003 * 109.46927 * 304.99848 * 10 8 5 33 33 H 1.08997 * 109.47177 * 64.99527 * 10 8 5 34 34 H 0.97001 * 119.99851 * 179.97438 * 17 16 14 35 35 H 1.09007 * 109.58686 * 186.60756 * 22 11 8 36 36 H 1.09002 * 109.70704 * 66.25234 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7233 -1.2482 5 6 3.5710 -0.6952 -1.2657 6 1 3.9159 0.3387 -1.2541 7 6 4.0805 -1.3893 -2.5303 8 6 4.1054 -1.4264 -0.0303 9 1 3.8377 -2.4817 -0.0859 10 6 5.6274 -1.2830 0.0322 11 7 3.5047 -0.8286 1.1699 12 6 4.2811 -0.3847 2.1781 13 8 5.4831 -0.5718 2.1481 14 6 3.6785 0.3222 3.3093 15 1 2.6047 0.4159 3.3775 16 6 4.4943 0.8772 4.3032 17 7 5.7935 0.7634 4.2209 18 14 3.7253 1.7787 5.7471 19 1 2.2469 1.7677 5.6071 20 1 4.1081 1.1034 7.0132 21 1 4.2094 3.1825 5.7690 22 6 2.0414 -0.7234 1.2498 23 1 -0.3634 0.5127 0.8906 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5148 -0.8894 26 1 1.6968 -1.7576 -1.2348 27 1 1.6582 -0.2250 -2.1389 28 1 3.7344 -2.4229 -2.5421 29 1 3.7001 -0.8687 -3.4091 30 1 5.1704 -1.3711 -2.5407 31 1 6.0145 -1.8767 0.8603 32 1 6.0641 -1.6348 -0.9025 33 1 5.8877 -0.2354 0.1833 34 1 6.3586 1.1481 4.9091 35 1 1.7637 -0.1572 2.1390 36 1 1.6034 -1.7203 1.2998 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229408482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -43.548935 kcal Electronic energy + Delta-G solvation = -16633.399347 eV Core-core repulsion = 14117.253195 eV Total energy + Delta-G solvation = -2516.146152 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19074 -36.21533 -33.85209 -32.65048 -32.02170 -28.85606 -26.71977 -25.73723 -24.88095 -22.81091 -20.30637 -19.84170 -18.69024 -16.32361 -15.54325 -14.92567 -14.61102 -14.25092 -13.91890 -13.63490 -12.79018 -12.67490 -12.54012 -12.17346 -11.83864 -11.57291 -11.50101 -11.31029 -11.07367 -11.01229 -10.87299 -10.67167 -10.33721 -10.22309 -10.18652 -10.07932 -9.86731 -9.56262 -8.83548 -7.11782 -7.05139 -6.10759 -4.60962 3.12923 3.21514 3.25242 4.10025 4.56456 4.60204 5.07613 5.20569 5.26996 5.39906 5.71723 5.76852 5.84741 5.87503 5.93706 5.99547 6.09859 6.11818 6.16832 6.19222 6.34028 6.36311 6.49378 6.53421 6.64515 6.67795 6.71468 6.87092 7.19505 7.47517 7.50161 7.72441 8.21774 8.42429 9.05496 9.50955 10.61314 10.81179 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.009825 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.012893 B = 2849.196477 C = 3638.061585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.071 0.929 4 C -0.102 4.102 5 C -0.105 4.105 6 H 0.069 0.931 7 C -0.143 4.143 8 C 0.158 3.842 9 H 0.042 0.958 10 C -0.124 4.124 11 N -0.640 5.640 12 C 0.559 3.441 13 O -0.568 6.568 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.903 3.097 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.127 3.873 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -1.612 -8.233 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.090 0.910 4 C -0.140 4.140 5 C -0.125 4.125 6 H 0.087 0.913 7 C -0.201 4.201 8 C 0.054 3.946 9 H 0.060 0.940 10 C -0.181 4.181 11 N -0.377 5.377 12 C 0.365 3.635 13 O -0.451 6.451 14 C -0.582 4.582 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.728 3.272 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C 0.003 3.997 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.062 -1.683 -8.143 10.909 hybrid contribution -0.574 0.507 0.645 1.001 sum -7.635 -1.176 -7.498 10.766 Atomic orbital electron populations 1.21752 0.95566 1.01333 1.01297 1.21570 0.94751 1.00543 0.96181 0.91017 1.21575 0.95253 1.00026 0.97125 1.21599 0.95180 1.00510 0.95214 0.91262 1.21815 1.01327 1.00067 0.96846 1.20849 0.94506 0.94478 0.84783 0.94014 1.22142 0.93157 1.04119 0.98661 1.48218 1.05017 1.66018 1.18459 1.18163 0.85804 0.78280 0.81230 1.90611 1.14954 1.60533 1.78974 1.21070 0.93770 1.36858 1.06488 0.91054 1.25707 0.94449 0.94759 0.98193 1.70022 1.04010 1.34593 1.31093 0.86384 0.80143 0.79353 0.81290 1.18798 1.20194 1.20239 1.21460 0.82269 0.98400 0.97586 0.92609 0.93011 0.93194 0.92548 0.92860 0.93095 0.93302 0.92308 0.90373 0.96360 0.91765 0.92255 0.89029 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 37.16 0.34 -1.46 16 2 C -0.11 -1.76 2.87 -90.50 -0.26 -2.02 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.10 -1.51 4.45 -26.69 -0.12 -1.63 16 5 C -0.11 -1.76 2.34 -90.50 -0.21 -1.97 16 6 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.14 -1.96 8.97 37.15 0.33 -1.63 16 8 C 0.16 3.21 2.95 -67.60 -0.20 3.01 16 9 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 10 C -0.12 -2.71 7.48 37.16 0.28 -2.44 16 11 N -0.64 -14.75 2.97 -166.87 -0.50 -15.25 16 12 C 0.56 15.76 7.43 -12.99 -0.10 15.67 16 13 O -0.57 -17.63 10.60 5.20 0.06 -17.57 16 14 C -0.55 -15.23 8.88 -35.63 -0.32 -15.55 16 15 H 0.07 1.84 5.64 -52.48 -0.30 1.54 16 16 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 17 N -0.77 -22.80 11.84 55.55 0.66 -22.15 16 18 Si 0.90 20.10 29.56 -169.99 -5.02 15.07 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C 0.13 2.44 5.63 -3.71 -0.02 2.42 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.82 6.50 -51.93 -0.34 0.48 16 31 H 0.08 1.94 6.53 -51.93 -0.34 1.60 16 32 H 0.02 0.33 6.39 -51.93 -0.33 0.00 16 33 H 0.06 1.59 6.96 -51.93 -0.36 1.23 16 34 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 35 H 0.09 1.85 5.30 -51.93 -0.28 1.58 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -31.52 277.17 -6.72 -38.24 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.73 Total: 0.73 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.37 Total: -3.25 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.16 Total: -37.39 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.06 Total: -17.57 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.52 -6.72 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229408482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.310 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds