Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49313 * 2 1 4 4 C 1.53037 * 109.49979 * 239.90744 * 2 1 3 5 5 C 1.53048 * 109.53594 * 178.68228 * 4 2 1 6 6 H 1.08993 * 109.49565 * 301.41106 * 5 4 2 7 7 C 1.52994 * 109.51978 * 181.32935 * 5 4 2 8 8 C 1.53187 * 109.31241 * 61.36025 * 5 4 2 9 9 H 1.09009 * 109.59015 * 65.15507 * 8 5 4 10 10 C 1.53002 * 109.58644 * 185.57813 * 8 5 4 11 11 N 1.46928 * 108.78079 * 305.36382 * 8 5 4 12 12 C 1.34774 * 120.63397 * 233.63473 * 11 8 5 13 13 O 1.21687 * 119.99864 * 354.19914 * 12 11 8 14 14 C 1.46368 * 119.99766 * 174.20511 * 12 11 8 15 15 H 1.08003 * 120.00534 * 5.12453 * 14 12 11 16 16 C 1.40055 * 119.99815 * 185.12326 * 14 12 11 17 17 N 1.30676 * 119.99717 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00064 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47502 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47350 * 120.00133 * 18 16 14 21 21 H 1.48504 * 109.47276 * 239.99983 * 18 16 14 22 22 C 1.46922 * 118.73279 * 53.60771 * 11 8 5 23 23 H 1.08997 * 109.47463 * 299.93096 * 1 2 3 24 24 H 1.09006 * 109.46768 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47037 * 59.93878 * 1 2 3 26 26 H 1.09006 * 109.45552 * 298.69603 * 4 2 1 27 27 H 1.08999 * 109.46482 * 58.65869 * 4 2 1 28 28 H 1.09001 * 109.47259 * 300.14210 * 7 5 4 29 29 H 1.08997 * 109.47766 * 60.14620 * 7 5 4 30 30 H 1.09006 * 109.46839 * 180.14430 * 7 5 4 31 31 H 1.08996 * 109.47221 * 184.99921 * 10 8 5 32 32 H 1.09003 * 109.46927 * 304.99848 * 10 8 5 33 33 H 1.08997 * 109.47177 * 64.99527 * 10 8 5 34 34 H 0.97001 * 119.99851 * 179.97438 * 17 16 14 35 35 H 1.09007 * 109.58686 * 186.60756 * 22 11 8 36 36 H 1.09002 * 109.70704 * 66.25234 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7233 -1.2482 5 6 3.5710 -0.6952 -1.2657 6 1 3.9159 0.3387 -1.2541 7 6 4.0805 -1.3893 -2.5303 8 6 4.1054 -1.4264 -0.0303 9 1 3.8377 -2.4817 -0.0859 10 6 5.6274 -1.2830 0.0322 11 7 3.5047 -0.8286 1.1699 12 6 4.2811 -0.3847 2.1781 13 8 5.4831 -0.5718 2.1481 14 6 3.6785 0.3222 3.3093 15 1 2.6047 0.4159 3.3775 16 6 4.4943 0.8772 4.3032 17 7 5.7935 0.7634 4.2209 18 14 3.7253 1.7787 5.7471 19 1 2.2469 1.7677 5.6071 20 1 4.1081 1.1034 7.0132 21 1 4.2094 3.1825 5.7690 22 6 2.0414 -0.7234 1.2498 23 1 -0.3634 0.5127 0.8906 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5148 -0.8894 26 1 1.6968 -1.7576 -1.2348 27 1 1.6582 -0.2250 -2.1389 28 1 3.7344 -2.4229 -2.5421 29 1 3.7001 -0.8687 -3.4091 30 1 5.1704 -1.3711 -2.5407 31 1 6.0145 -1.8767 0.8603 32 1 6.0641 -1.6348 -0.9025 33 1 5.8877 -0.2354 0.1833 34 1 6.3586 1.1481 4.9091 35 1 1.7637 -0.1572 2.1390 36 1 1.6034 -1.7203 1.2998 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229408482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -63.599409 kcal Electronic energy + Delta-G solvation = -16634.268801 eV Core-core repulsion = 14117.253195 eV Total energy + Delta-G solvation = -2517.015605 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85540 -38.05863 -35.33683 -34.58324 -33.85993 -30.45213 -28.34616 -27.30523 -26.42583 -24.46692 -21.92527 -21.21155 -20.42226 -18.30620 -17.50743 -16.59225 -16.16116 -15.79889 -15.45210 -15.23928 -14.61153 -13.95111 -13.88426 -13.73810 -13.24879 -13.16864 -12.95243 -12.90523 -12.76448 -12.67618 -12.55257 -12.16790 -12.10333 -11.92871 -11.58612 -11.57669 -11.31548 -11.00189 -10.92140 -9.22739 -8.91519 -8.19853 -6.79738 1.37848 1.38266 1.55214 2.23497 2.49534 2.87065 3.61727 3.81937 3.94871 4.00366 4.10606 4.36721 4.44510 4.58957 4.66186 4.72448 4.80066 4.83949 4.86200 4.90987 5.00522 5.09917 5.11224 5.21429 5.27782 5.38792 5.41288 5.43713 5.47523 5.63867 5.66668 5.82427 6.20276 6.51184 6.91424 7.50382 8.53439 8.72306 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.009825 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.012893 B = 2849.196477 C = 3638.061585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.049 0.951 4 C -0.096 4.096 5 C -0.099 4.099 6 H 0.044 0.956 7 C -0.137 4.137 8 C 0.151 3.849 9 H 0.056 0.944 10 C -0.109 4.109 11 N -0.645 5.645 12 C 0.539 3.461 13 O -0.612 6.612 14 C -0.572 4.572 15 H 0.088 0.912 16 C 0.030 3.970 17 N -0.822 5.822 18 Si 0.991 3.009 19 H -0.247 1.247 20 H -0.270 1.270 21 H -0.270 1.270 22 C 0.122 3.878 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.272 0.728 35 H 0.075 0.925 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 -1.691 -9.405 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.068 0.932 4 C -0.134 4.134 5 C -0.119 4.119 6 H 0.062 0.938 7 C -0.194 4.194 8 C 0.047 3.953 9 H 0.073 0.927 10 C -0.166 4.166 11 N -0.381 5.381 12 C 0.345 3.655 13 O -0.498 6.498 14 C -0.608 4.608 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.452 5.452 18 Si 0.810 3.190 19 H -0.170 1.170 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.002 4.002 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.866 -1.779 -9.358 13.714 hybrid contribution 0.311 0.474 0.948 1.105 sum -9.555 -1.305 -8.410 12.795 Atomic orbital electron populations 1.21692 0.92516 1.02606 1.02335 1.21503 0.97162 0.98832 0.95059 0.93243 1.21570 0.93279 1.01104 0.97427 1.21518 0.96929 0.98799 0.94659 0.93750 1.21772 1.00950 1.00880 0.95818 1.21081 0.93119 0.95606 0.85465 0.92660 1.21847 0.95149 1.00731 0.98858 1.48142 1.06584 1.65139 1.18261 1.18556 0.85790 0.78567 0.82602 1.90590 1.16804 1.62141 1.80287 1.21572 0.94843 1.37259 1.07149 0.89443 1.26914 0.94773 0.95276 1.01492 1.70192 1.06124 1.36173 1.32711 0.85075 0.79770 0.77652 0.76463 1.16994 1.19458 1.19476 1.21668 0.79937 0.99603 0.98946 0.92696 0.91581 0.91142 0.90986 0.90063 0.91537 0.90878 0.92965 0.94245 0.92641 0.95803 0.91826 0.90709 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.20 71.98 0.66 -2.26 16 2 C -0.11 -3.15 2.87 -10.72 -0.03 -3.19 16 3 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.10 -2.52 4.45 30.62 0.14 -2.38 16 5 C -0.10 -3.15 2.34 -10.72 -0.03 -3.17 16 6 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 7 C -0.14 -3.31 8.97 71.98 0.65 -2.66 16 8 C 0.15 6.11 2.95 44.97 0.13 6.24 16 9 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 10 C -0.11 -4.96 7.48 71.98 0.54 -4.42 16 11 N -0.65 -30.37 2.97 -800.07 -2.38 -32.75 16 12 C 0.54 31.83 7.43 86.36 0.64 32.47 16 13 O -0.61 -40.44 10.60 -4.31 -0.05 -40.49 16 14 C -0.57 -32.90 8.88 24.83 0.22 -32.68 16 15 H 0.09 4.57 5.64 -2.91 -0.02 4.55 16 16 C 0.03 1.70 5.50 85.31 0.47 2.17 16 17 N -0.82 -50.92 11.84 21.84 0.26 -50.66 16 18 Si 0.99 41.73 29.56 68.60 2.03 43.76 16 19 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.12 4.57 5.63 86.36 0.49 5.06 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.32 6.50 -2.38 -0.02 1.31 16 31 H 0.04 2.07 6.53 -2.39 -0.02 2.05 16 32 H 0.06 2.05 6.39 -2.39 -0.02 2.04 16 33 H 0.02 1.23 6.96 -2.39 -0.02 1.22 16 34 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 35 H 0.07 3.03 5.30 -2.38 -0.01 3.02 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.27 277.17 4.79 -68.48 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.05 Total: 16.48 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.88 Total: -4.82 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.12 Total: -83.41 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.05 Total: -40.49 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -73.27 4.79 -68.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229408482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.884 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds