Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46990 * 2 1 4 4 C 1.37094 * 119.99836 * 88.45609 * 3 2 1 5 5 H 1.07995 * 120.00391 * 310.86027 * 4 3 2 6 6 C 1.38955 * 119.99333 * 130.86214 * 4 3 2 7 7 N 1.31414 * 119.99697 * 163.74633 * 6 4 3 8 8 Si 1.86796 * 120.00398 * 343.74681 * 6 4 3 9 9 H 1.48493 * 109.47172 * 96.07472 * 8 6 4 10 10 H 1.48506 * 109.47215 * 216.07565 * 8 6 4 11 11 H 1.48502 * 109.47029 * 336.06933 * 8 6 4 12 12 C 1.34776 * 119.99505 * 268.45916 * 3 2 1 13 13 O 1.21299 * 119.99318 * 184.54873 * 12 3 2 14 14 C 1.50697 * 120.00485 * 4.54899 * 12 3 2 15 15 H 1.09006 * 110.43270 * 35.19714 * 14 12 3 16 16 C 1.54264 * 110.48731 * 272.65688 * 14 12 3 17 17 C 1.53875 * 106.59811 * 217.71282 * 16 14 12 18 18 C 1.54270 * 106.59916 * 359.97438 * 17 16 14 19 19 C 1.54886 * 104.19472 * 23.61262 * 18 17 16 20 20 H 1.08994 * 110.75554 * 80.37081 * 19 18 17 21 21 C 1.52995 * 110.75638 * 203.74466 * 19 18 17 22 22 H 1.08996 * 109.47381 * 54.66487 * 1 2 3 23 23 H 1.09003 * 109.47268 * 294.66290 * 1 2 3 24 24 H 1.09001 * 109.47241 * 174.66118 * 1 2 3 25 25 H 1.08999 * 109.47586 * 119.99780 * 2 1 3 26 26 H 1.08996 * 109.46976 * 240.00005 * 2 1 3 27 27 H 0.96993 * 120.00140 * 180.02562 * 7 6 4 28 28 H 1.09007 * 110.02928 * 336.99086 * 16 14 12 29 29 H 1.08997 * 110.03712 * 98.37446 * 16 14 12 30 30 H 1.09004 * 110.03270 * 119.28371 * 17 16 14 31 31 H 1.08999 * 110.03148 * 240.71200 * 17 16 14 32 32 H 1.08999 * 110.48302 * 142.28922 * 18 17 16 33 33 H 1.09000 * 110.48193 * 264.80067 * 18 17 16 34 34 H 1.08995 * 109.47561 * 173.32836 * 21 19 18 35 35 H 1.09004 * 109.47082 * 293.32749 * 21 19 18 36 36 H 1.09001 * 109.47427 * 53.32903 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2166 2.0382 1.1869 5 1 1.4437 2.0358 1.9411 6 6 3.4122 2.7071 1.4192 7 7 3.4935 3.5894 2.3898 8 14 4.9037 2.3524 0.3521 9 1 4.9868 3.3618 -0.7338 10 1 6.1331 2.4165 1.1826 11 1 4.7771 0.9968 -0.2407 12 6 2.2725 2.0061 -1.1668 13 8 2.7544 3.1192 -1.1662 14 6 1.9580 1.3219 -2.4722 15 1 1.0559 0.7173 -2.3773 16 6 3.1472 0.4498 -2.9249 17 6 3.2334 0.5843 -4.4553 18 6 2.0930 1.5329 -4.8793 19 6 1.7975 2.3642 -3.6063 20 1 2.5222 3.1706 -3.4947 21 6 0.3708 2.9158 -3.6381 22 1 -0.3634 0.5943 -0.8383 23 1 -0.3634 0.4288 0.9339 24 1 -0.3634 -1.0232 -0.0956 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 4.3279 4.0566 2.5518 28 1 4.0689 0.8081 -2.4662 29 1 2.9735 -0.5905 -2.6499 30 1 4.1968 1.0078 -4.7393 31 1 3.1011 -0.3909 -4.9239 32 1 2.4192 2.1822 -5.6917 33 1 1.2135 0.9624 -5.1776 34 1 0.1451 3.3949 -2.6854 35 1 0.2815 3.6463 -4.4422 36 1 -0.3308 2.0994 -3.8093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230057426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -46.900941 kcal Electronic energy + Delta-G solvation = -16867.378058 eV Core-core repulsion = 14351.086552 eV Total energy + Delta-G solvation = -2516.291506 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58057 -37.01160 -34.81927 -32.23023 -30.99719 -29.57626 -28.97023 -25.18982 -24.26409 -22.59528 -20.44354 -20.05383 -18.72017 -17.14849 -15.96251 -15.38167 -14.64970 -14.54479 -13.75392 -13.54022 -13.28604 -13.02866 -12.96165 -12.43432 -12.27509 -12.16227 -11.78641 -11.31113 -11.11539 -10.98244 -10.82512 -10.61176 -10.50351 -10.38748 -10.18150 -10.15625 -9.95934 -9.81181 -8.53780 -8.33229 -7.45264 -6.12523 -3.95521 3.34523 3.47398 3.65598 3.89641 4.51324 4.59303 4.80832 4.95825 5.05305 5.25978 5.53320 5.58058 5.62215 5.70181 5.75283 5.84438 5.86433 5.86942 5.98058 6.03799 6.10438 6.13644 6.21480 6.25708 6.32511 6.45061 6.51404 6.56202 6.60610 6.76591 6.84031 7.93532 8.14536 8.87644 9.03063 9.50281 9.93509 10.93818 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.012169 C = 0.010688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.731067 B = 2300.346534 C = 2619.180687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.470 5.470 4 C -0.346 4.346 5 H 0.090 0.910 6 C 0.091 3.909 7 N -0.873 5.873 8 Si 0.908 3.092 9 H -0.260 1.260 10 H -0.307 1.307 11 H -0.278 1.278 12 C 0.469 3.531 13 O -0.545 6.545 14 C -0.109 4.109 15 H 0.087 0.913 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.081 4.081 20 H 0.090 0.910 21 C -0.139 4.139 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.270 0.730 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 -8.196 -12.029 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.193 5.193 4 C -0.473 4.473 5 H 0.108 0.892 6 C -0.117 4.117 7 N -0.509 5.509 8 Si 0.738 3.262 9 H -0.186 1.186 10 H -0.237 1.237 11 H -0.203 1.203 12 C 0.258 3.742 13 O -0.426 6.426 14 C -0.130 4.130 15 H 0.105 0.895 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.099 4.099 20 H 0.109 0.891 21 C -0.197 4.197 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.256 -7.504 -11.886 14.428 hybrid contribution 0.729 -0.255 -0.291 0.825 sum -2.527 -7.759 -12.177 14.658 Atomic orbital electron populations 1.22157 0.97202 1.00427 1.02395 1.21585 0.93806 0.85830 1.01366 1.43664 1.60285 1.10076 1.05284 1.18745 1.01864 1.32864 0.93782 0.89247 1.25368 0.98477 0.93352 0.94496 1.69738 1.27178 1.22368 1.31570 0.86364 0.80103 0.79095 0.80616 1.18595 1.23656 1.20342 1.20383 0.82282 0.86459 0.85103 1.90505 1.45383 1.20269 1.86461 1.22239 0.99103 0.97358 0.94336 0.89495 1.22121 0.98507 0.99233 0.95560 1.22101 0.98981 0.99275 0.95485 1.22430 0.98085 0.97622 0.97509 1.21983 0.98075 0.97405 0.92484 0.89123 1.21707 0.95632 1.00350 1.01975 0.93060 0.92203 0.92989 0.90883 0.92516 0.91998 0.91679 0.91599 0.92006 0.92037 0.91923 0.91792 0.92164 0.93026 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.03 37.16 0.37 -2.25 16 2 C 0.10 1.85 5.69 -4.04 -0.02 1.83 16 3 N -0.47 -11.48 2.04 -114.81 -0.23 -11.71 16 4 C -0.35 -10.00 9.62 -14.93 -0.14 -10.14 16 5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 6 C 0.09 2.75 4.92 -17.46 -0.09 2.67 16 7 N -0.87 -27.38 13.96 55.50 0.77 -26.60 16 8 Si 0.91 24.77 24.91 -169.99 -4.23 20.54 16 9 H -0.26 -7.46 6.55 56.52 0.37 -7.09 16 10 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16 11 H -0.28 -7.17 6.89 56.52 0.39 -6.79 16 12 C 0.47 11.25 5.09 -10.99 -0.06 11.20 16 13 O -0.54 -15.37 11.76 5.54 0.07 -15.30 16 14 C -0.11 -1.98 1.71 -90.13 -0.15 -2.13 16 15 H 0.09 1.42 5.98 -51.93 -0.31 1.11 16 16 C -0.12 -1.91 5.91 -25.61 -0.15 -2.06 16 17 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16 18 C -0.12 -1.55 6.27 -25.07 -0.16 -1.71 16 19 C -0.08 -1.34 2.74 -88.64 -0.24 -1.59 16 20 H 0.09 1.76 7.25 -51.93 -0.38 1.39 16 21 C -0.14 -2.10 9.28 37.16 0.34 -1.75 16 22 H 0.05 0.82 7.20 -51.93 -0.37 0.44 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 26 H 0.06 0.93 5.52 -51.93 -0.29 0.65 16 27 H 0.27 7.98 8.31 -40.82 -0.34 7.65 16 28 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 29 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -33.30 279.67 -5.82 -39.12 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.94 Total: -2.54 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.47 Total: -7.71 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.54 Total: -38.31 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.23 Total: 20.54 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.30 -5.82 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230057426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.781 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds