Wall clock time and date at job start Mon Mar 30 2020 03:12:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46508 * 109.46990 * 2 1
4 4 C 1.37094 * 119.99836 * 88.45609 * 3 2 1
5 5 H 1.07995 * 120.00391 * 310.86027 * 4 3 2
6 6 C 1.38955 * 119.99333 * 130.86214 * 4 3 2
7 7 N 1.31414 * 119.99697 * 163.74633 * 6 4 3
8 8 Si 1.86796 * 120.00398 * 343.74681 * 6 4 3
9 9 H 1.48493 * 109.47172 * 96.07472 * 8 6 4
10 10 H 1.48506 * 109.47215 * 216.07565 * 8 6 4
11 11 H 1.48502 * 109.47029 * 336.06933 * 8 6 4
12 12 C 1.34776 * 119.99505 * 268.45916 * 3 2 1
13 13 O 1.21299 * 119.99318 * 184.54873 * 12 3 2
14 14 C 1.50697 * 120.00485 * 4.54899 * 12 3 2
15 15 H 1.09006 * 110.43270 * 35.19714 * 14 12 3
16 16 C 1.54264 * 110.48731 * 272.65688 * 14 12 3
17 17 C 1.53875 * 106.59811 * 217.71282 * 16 14 12
18 18 C 1.54270 * 106.59916 * 359.97438 * 17 16 14
19 19 C 1.54886 * 104.19472 * 23.61262 * 18 17 16
20 20 H 1.08994 * 110.75554 * 80.37081 * 19 18 17
21 21 C 1.52995 * 110.75638 * 203.74466 * 19 18 17
22 22 H 1.08996 * 109.47381 * 54.66487 * 1 2 3
23 23 H 1.09003 * 109.47268 * 294.66290 * 1 2 3
24 24 H 1.09001 * 109.47241 * 174.66118 * 1 2 3
25 25 H 1.08999 * 109.47586 * 119.99780 * 2 1 3
26 26 H 1.08996 * 109.46976 * 240.00005 * 2 1 3
27 27 H 0.96993 * 120.00140 * 180.02562 * 7 6 4
28 28 H 1.09007 * 110.02928 * 336.99086 * 16 14 12
29 29 H 1.08997 * 110.03712 * 98.37446 * 16 14 12
30 30 H 1.09004 * 110.03270 * 119.28371 * 17 16 14
31 31 H 1.08999 * 110.03148 * 240.71200 * 17 16 14
32 32 H 1.08999 * 110.48302 * 142.28922 * 18 17 16
33 33 H 1.09000 * 110.48193 * 264.80067 * 18 17 16
34 34 H 1.08995 * 109.47561 * 173.32836 * 21 19 18
35 35 H 1.09004 * 109.47082 * 293.32749 * 21 19 18
36 36 H 1.09001 * 109.47427 * 53.32903 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2166 2.0382 1.1869
5 1 1.4437 2.0358 1.9411
6 6 3.4122 2.7071 1.4192
7 7 3.4935 3.5894 2.3898
8 14 4.9037 2.3524 0.3521
9 1 4.9868 3.3618 -0.7338
10 1 6.1331 2.4165 1.1826
11 1 4.7771 0.9968 -0.2407
12 6 2.2725 2.0061 -1.1668
13 8 2.7544 3.1192 -1.1662
14 6 1.9580 1.3219 -2.4722
15 1 1.0559 0.7173 -2.3773
16 6 3.1472 0.4498 -2.9249
17 6 3.2334 0.5843 -4.4553
18 6 2.0930 1.5329 -4.8793
19 6 1.7975 2.3642 -3.6063
20 1 2.5222 3.1706 -3.4947
21 6 0.3708 2.9158 -3.6381
22 1 -0.3634 0.5943 -0.8383
23 1 -0.3634 0.4288 0.9339
24 1 -0.3634 -1.0232 -0.0956
25 1 1.8934 -0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 4.3279 4.0566 2.5518
28 1 4.0689 0.8081 -2.4662
29 1 2.9735 -0.5905 -2.6499
30 1 4.1968 1.0078 -4.7393
31 1 3.1011 -0.3909 -4.9239
32 1 2.4192 2.1822 -5.6917
33 1 1.2135 0.9624 -5.1776
34 1 0.1451 3.3949 -2.6854
35 1 0.2815 3.6463 -4.4422
36 1 -0.3308 2.0994 -3.8093
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230057426.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:24
Heat of formation + Delta-G solvation = -46.900941 kcal
Electronic energy + Delta-G solvation = -16867.378058 eV
Core-core repulsion = 14351.086552 eV
Total energy + Delta-G solvation = -2516.291506 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.58057 -37.01160 -34.81927 -32.23023 -30.99719 -29.57626 -28.97023 -25.18982
-24.26409 -22.59528 -20.44354 -20.05383 -18.72017 -17.14849 -15.96251 -15.38167
-14.64970 -14.54479 -13.75392 -13.54022 -13.28604 -13.02866 -12.96165 -12.43432
-12.27509 -12.16227 -11.78641 -11.31113 -11.11539 -10.98244 -10.82512 -10.61176
-10.50351 -10.38748 -10.18150 -10.15625 -9.95934 -9.81181 -8.53780 -8.33229
-7.45264 -6.12523 -3.95521 3.34523 3.47398 3.65598 3.89641 4.51324
4.59303 4.80832 4.95825 5.05305 5.25978 5.53320 5.58058 5.62215
5.70181 5.75283 5.84438 5.86433 5.86942 5.98058 6.03799 6.10438
6.13644 6.21480 6.25708 6.32511 6.45061 6.51404 6.56202 6.60610
6.76591 6.84031 7.93532 8.14536 8.87644 9.03063 9.50281 9.93509
10.93818
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.026591 B = 0.012169 C = 0.010688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.731067 B = 2300.346534 C = 2619.180687
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.098 3.902
3 N -0.470 5.470
4 C -0.346 4.346
5 H 0.090 0.910
6 C 0.091 3.909
7 N -0.873 5.873
8 Si 0.908 3.092
9 H -0.260 1.260
10 H -0.307 1.307
11 H -0.278 1.278
12 C 0.469 3.531
13 O -0.545 6.545
14 C -0.109 4.109
15 H 0.087 0.913
16 C -0.116 4.116
17 C -0.121 4.121
18 C -0.119 4.119
19 C -0.081 4.081
20 H 0.090 0.910
21 C -0.139 4.139
22 H 0.050 0.950
23 H 0.059 0.941
24 H 0.051 0.949
25 H 0.073 0.927
26 H 0.057 0.943
27 H 0.270 0.730
28 H 0.064 0.936
29 H 0.065 0.935
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.063 0.937
34 H 0.059 0.941
35 H 0.051 0.949
36 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.592 -8.196 -12.029 14.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.026 4.026
3 N -0.193 5.193
4 C -0.473 4.473
5 H 0.108 0.892
6 C -0.117 4.117
7 N -0.509 5.509
8 Si 0.738 3.262
9 H -0.186 1.186
10 H -0.237 1.237
11 H -0.203 1.203
12 C 0.258 3.742
13 O -0.426 6.426
14 C -0.130 4.130
15 H 0.105 0.895
16 C -0.154 4.154
17 C -0.158 4.158
18 C -0.156 4.156
19 C -0.099 4.099
20 H 0.109 0.891
21 C -0.197 4.197
22 H 0.069 0.931
23 H 0.078 0.922
24 H 0.070 0.930
25 H 0.091 0.909
26 H 0.075 0.925
27 H 0.080 0.920
28 H 0.083 0.917
29 H 0.084 0.916
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.078 0.922
35 H 0.070 0.930
36 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -3.256 -7.504 -11.886 14.428
hybrid contribution 0.729 -0.255 -0.291 0.825
sum -2.527 -7.759 -12.177 14.658
Atomic orbital electron populations
1.22157 0.97202 1.00427 1.02395 1.21585 0.93806 0.85830 1.01366
1.43664 1.60285 1.10076 1.05284 1.18745 1.01864 1.32864 0.93782
0.89247 1.25368 0.98477 0.93352 0.94496 1.69738 1.27178 1.22368
1.31570 0.86364 0.80103 0.79095 0.80616 1.18595 1.23656 1.20342
1.20383 0.82282 0.86459 0.85103 1.90505 1.45383 1.20269 1.86461
1.22239 0.99103 0.97358 0.94336 0.89495 1.22121 0.98507 0.99233
0.95560 1.22101 0.98981 0.99275 0.95485 1.22430 0.98085 0.97622
0.97509 1.21983 0.98075 0.97405 0.92484 0.89123 1.21707 0.95632
1.00350 1.01975 0.93060 0.92203 0.92989 0.90883 0.92516 0.91998
0.91679 0.91599 0.92006 0.92037 0.91923 0.91792 0.92164 0.93026
0.93205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.63 10.03 37.16 0.37 -2.25 16
2 C 0.10 1.85 5.69 -4.04 -0.02 1.83 16
3 N -0.47 -11.48 2.04 -114.81 -0.23 -11.71 16
4 C -0.35 -10.00 9.62 -14.93 -0.14 -10.14 16
5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16
6 C 0.09 2.75 4.92 -17.46 -0.09 2.67 16
7 N -0.87 -27.38 13.96 55.50 0.77 -26.60 16
8 Si 0.91 24.77 24.91 -169.99 -4.23 20.54 16
9 H -0.26 -7.46 6.55 56.52 0.37 -7.09 16
10 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16
11 H -0.28 -7.17 6.89 56.52 0.39 -6.79 16
12 C 0.47 11.25 5.09 -10.99 -0.06 11.20 16
13 O -0.54 -15.37 11.76 5.54 0.07 -15.30 16
14 C -0.11 -1.98 1.71 -90.13 -0.15 -2.13 16
15 H 0.09 1.42 5.98 -51.93 -0.31 1.11 16
16 C -0.12 -1.91 5.91 -25.61 -0.15 -2.06 16
17 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16
18 C -0.12 -1.55 6.27 -25.07 -0.16 -1.71 16
19 C -0.08 -1.34 2.74 -88.64 -0.24 -1.59 16
20 H 0.09 1.76 7.25 -51.93 -0.38 1.39 16
21 C -0.14 -2.10 9.28 37.16 0.34 -1.75 16
22 H 0.05 0.82 7.20 -51.93 -0.37 0.44 16
23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
25 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16
26 H 0.06 0.93 5.52 -51.93 -0.29 0.65 16
27 H 0.27 7.98 8.31 -40.82 -0.34 7.65 16
28 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16
29 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16
30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16
34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16
LS Contribution 279.67 15.07 4.21 4.21
Total: -1.00 -33.30 279.67 -5.82 -39.12
By element:
Atomic # 1 Polarization: 3.39 SS G_CDS: -5.94 Total: -2.54 kcal
Atomic # 6 Polarization: -7.24 SS G_CDS: -0.47 Total: -7.71 kcal
Atomic # 7 Polarization: -38.85 SS G_CDS: 0.54 Total: -38.31 kcal
Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal
Atomic # 14 Polarization: 24.77 SS G_CDS: -4.23 Total: 20.54 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -33.30 -5.82 -39.12 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230057426.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.781 kcal
(2) G-P(sol) polarization free energy of solvation -33.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.078 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds