Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46990 * 2 1 4 4 C 1.37094 * 119.99836 * 88.45609 * 3 2 1 5 5 H 1.07995 * 120.00391 * 310.86027 * 4 3 2 6 6 C 1.38955 * 119.99333 * 130.86214 * 4 3 2 7 7 N 1.31414 * 119.99697 * 163.74633 * 6 4 3 8 8 Si 1.86796 * 120.00398 * 343.74681 * 6 4 3 9 9 H 1.48493 * 109.47172 * 96.07472 * 8 6 4 10 10 H 1.48506 * 109.47215 * 216.07565 * 8 6 4 11 11 H 1.48502 * 109.47029 * 336.06933 * 8 6 4 12 12 C 1.34776 * 119.99505 * 268.45916 * 3 2 1 13 13 O 1.21299 * 119.99318 * 184.54873 * 12 3 2 14 14 C 1.50697 * 120.00485 * 4.54899 * 12 3 2 15 15 H 1.09006 * 110.43270 * 35.19714 * 14 12 3 16 16 C 1.54264 * 110.48731 * 272.65688 * 14 12 3 17 17 C 1.53875 * 106.59811 * 217.71282 * 16 14 12 18 18 C 1.54270 * 106.59916 * 359.97438 * 17 16 14 19 19 C 1.54886 * 104.19472 * 23.61262 * 18 17 16 20 20 H 1.08994 * 110.75554 * 80.37081 * 19 18 17 21 21 C 1.52995 * 110.75638 * 203.74466 * 19 18 17 22 22 H 1.08996 * 109.47381 * 54.66487 * 1 2 3 23 23 H 1.09003 * 109.47268 * 294.66290 * 1 2 3 24 24 H 1.09001 * 109.47241 * 174.66118 * 1 2 3 25 25 H 1.08999 * 109.47586 * 119.99780 * 2 1 3 26 26 H 1.08996 * 109.46976 * 240.00005 * 2 1 3 27 27 H 0.96993 * 120.00140 * 180.02562 * 7 6 4 28 28 H 1.09007 * 110.02928 * 336.99086 * 16 14 12 29 29 H 1.08997 * 110.03712 * 98.37446 * 16 14 12 30 30 H 1.09004 * 110.03270 * 119.28371 * 17 16 14 31 31 H 1.08999 * 110.03148 * 240.71200 * 17 16 14 32 32 H 1.08999 * 110.48302 * 142.28922 * 18 17 16 33 33 H 1.09000 * 110.48193 * 264.80067 * 18 17 16 34 34 H 1.08995 * 109.47561 * 173.32836 * 21 19 18 35 35 H 1.09004 * 109.47082 * 293.32749 * 21 19 18 36 36 H 1.09001 * 109.47427 * 53.32903 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2166 2.0382 1.1869 5 1 1.4437 2.0358 1.9411 6 6 3.4122 2.7071 1.4192 7 7 3.4935 3.5894 2.3898 8 14 4.9037 2.3524 0.3521 9 1 4.9868 3.3618 -0.7338 10 1 6.1331 2.4165 1.1826 11 1 4.7771 0.9968 -0.2407 12 6 2.2725 2.0061 -1.1668 13 8 2.7544 3.1192 -1.1662 14 6 1.9580 1.3219 -2.4722 15 1 1.0559 0.7173 -2.3773 16 6 3.1472 0.4498 -2.9249 17 6 3.2334 0.5843 -4.4553 18 6 2.0930 1.5329 -4.8793 19 6 1.7975 2.3642 -3.6063 20 1 2.5222 3.1706 -3.4947 21 6 0.3708 2.9158 -3.6381 22 1 -0.3634 0.5943 -0.8383 23 1 -0.3634 0.4288 0.9339 24 1 -0.3634 -1.0232 -0.0956 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 4.3279 4.0566 2.5518 28 1 4.0689 0.8081 -2.4662 29 1 2.9735 -0.5905 -2.6499 30 1 4.1968 1.0078 -4.7393 31 1 3.1011 -0.3909 -4.9239 32 1 2.4192 2.1822 -5.6917 33 1 1.2135 0.9624 -5.1776 34 1 0.1451 3.3949 -2.6854 35 1 0.2815 3.6463 -4.4422 36 1 -0.3308 2.0994 -3.8093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230057426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -68.729206 kcal Electronic energy + Delta-G solvation = -16868.324602 eV Core-core repulsion = 14351.086552 eV Total energy + Delta-G solvation = -2517.238050 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26693 -38.47753 -36.70737 -34.41570 -32.18519 -31.25635 -30.34831 -26.80595 -25.87644 -24.11684 -22.05719 -21.29897 -20.36278 -19.01125 -17.66177 -17.34351 -16.26978 -16.00438 -15.41279 -15.16055 -14.77170 -14.72549 -14.35464 -14.19456 -13.89066 -13.82378 -13.05491 -12.82606 -12.70296 -12.60610 -12.33882 -12.17544 -12.07362 -11.83671 -11.69211 -11.47262 -11.40003 -11.24914 -10.83813 -10.27752 -9.48665 -8.44041 -6.25870 1.16161 1.28458 1.41473 1.98128 2.38787 2.73048 3.06401 3.56149 3.73385 3.82543 4.16837 4.29501 4.37451 4.46992 4.51963 4.53514 4.63898 4.64221 4.69208 4.80109 4.94118 4.98304 5.02475 5.08473 5.09761 5.21204 5.26841 5.36763 5.43531 5.44515 5.58495 5.72160 5.91251 6.80362 6.94979 7.34980 7.93561 8.65688 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.012169 C = 0.010688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.731067 B = 2300.346534 C = 2619.180687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.090 3.910 3 N -0.486 5.486 4 C -0.340 4.340 5 H 0.062 0.938 6 C 0.041 3.959 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.289 1.289 10 H -0.300 1.300 11 H -0.255 1.255 12 C 0.461 3.539 13 O -0.597 6.597 14 C -0.103 4.103 15 H 0.116 0.884 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.088 4.088 20 H 0.049 0.951 21 C -0.135 4.135 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.271 0.729 28 H 0.028 0.972 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -11.248 -15.025 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 N -0.209 5.209 4 C -0.467 4.467 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.216 1.216 10 H -0.229 1.229 11 H -0.179 1.179 12 C 0.253 3.747 13 O -0.481 6.481 14 C -0.125 4.125 15 H 0.134 0.866 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.144 4.144 19 C -0.107 4.107 20 H 0.068 0.932 21 C -0.192 4.192 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.183 -10.614 -14.882 18.752 hybrid contribution 0.900 0.718 0.638 1.316 sum -3.283 -9.896 -14.245 17.653 Atomic orbital electron populations 1.22087 0.94858 1.03093 1.01306 1.21882 0.95696 0.82614 1.02992 1.43948 1.60580 1.12319 1.04010 1.18679 1.00627 1.32680 0.94762 0.92034 1.26036 1.00977 0.93642 0.95590 1.69825 1.27857 1.24208 1.33668 0.85534 0.77964 0.79197 0.78448 1.21599 1.22914 1.17893 1.21490 0.80305 0.86034 0.86899 1.90475 1.47380 1.22817 1.87455 1.22317 1.01102 0.98057 0.90996 0.86626 1.22201 0.95674 0.99985 0.97815 1.22116 0.99021 1.01219 0.93000 1.22401 0.99190 0.97289 0.95549 1.22024 0.97923 0.96599 0.94199 0.93206 1.21684 0.95341 1.01555 1.00653 0.92837 0.94488 0.88537 0.91050 0.89104 0.91966 0.95289 0.88766 0.92381 0.88511 0.90669 0.88861 0.95791 0.91373 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 10.03 71.98 0.72 -3.80 16 2 C 0.09 3.18 5.69 86.38 0.49 3.67 16 3 N -0.49 -23.56 2.04 -635.53 -1.30 -24.86 16 4 C -0.34 -20.19 9.62 84.04 0.81 -19.39 16 5 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 6 C 0.04 2.55 4.92 84.93 0.42 2.96 16 7 N -0.92 -60.01 13.96 21.66 0.30 -59.71 16 8 Si 0.96 52.73 24.91 68.60 1.71 54.44 16 9 H -0.29 -17.09 6.55 99.48 0.65 -16.44 16 10 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 11 H -0.25 -12.78 6.89 99.48 0.69 -12.09 16 12 C 0.46 22.09 5.09 87.66 0.45 22.54 16 13 O -0.60 -34.77 11.76 -3.09 -0.04 -34.81 16 14 C -0.10 -3.49 1.71 -10.47 -0.02 -3.51 16 15 H 0.12 3.24 5.98 -2.38 -0.01 3.22 16 16 C -0.12 -3.47 5.91 31.32 0.19 -3.29 16 17 C -0.12 -2.54 6.80 31.32 0.21 -2.33 16 18 C -0.11 -2.29 6.27 31.67 0.20 -2.09 16 19 C -0.09 -2.77 2.74 -9.51 -0.03 -2.79 16 20 H 0.05 1.96 7.25 -2.39 -0.02 1.95 16 21 C -0.14 -3.77 9.28 71.98 0.67 -3.11 16 22 H 0.05 1.53 7.20 -2.39 -0.02 1.51 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 26 H 0.09 2.58 5.52 -2.39 -0.01 2.57 16 27 H 0.27 16.74 8.31 -92.71 -0.77 15.97 16 28 H 0.03 1.05 7.62 -2.38 -0.02 1.03 16 29 H 0.09 2.19 7.28 -2.39 -0.02 2.17 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.52 8.02 -2.39 -0.02 1.50 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -77.65 279.67 5.75 -71.91 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.96 Total: 4.16 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.11 Total: -11.13 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -0.99 Total: -84.56 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.04 Total: -34.81 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 1.71 Total: 54.44 kcal Total: -77.65 5.75 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230057426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.177 kcal (2) G-P(sol) polarization free energy of solvation -77.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds