Wall clock time and date at job start Mon Mar 30 2020 03:12:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46508 * 109.46990 * 2 1
4 4 C 1.37094 * 119.99836 * 88.45609 * 3 2 1
5 5 H 1.07995 * 120.00391 * 310.86027 * 4 3 2
6 6 C 1.38955 * 119.99333 * 130.86214 * 4 3 2
7 7 N 1.31414 * 119.99697 * 163.74633 * 6 4 3
8 8 Si 1.86796 * 120.00398 * 343.74681 * 6 4 3
9 9 H 1.48493 * 109.47172 * 96.07472 * 8 6 4
10 10 H 1.48506 * 109.47215 * 216.07565 * 8 6 4
11 11 H 1.48502 * 109.47029 * 336.06933 * 8 6 4
12 12 C 1.34776 * 119.99505 * 268.45916 * 3 2 1
13 13 O 1.21299 * 119.99318 * 184.54873 * 12 3 2
14 14 C 1.50697 * 120.00485 * 4.54899 * 12 3 2
15 15 H 1.09006 * 110.43270 * 35.19714 * 14 12 3
16 16 C 1.54264 * 110.48731 * 272.65688 * 14 12 3
17 17 C 1.53875 * 106.59811 * 217.71282 * 16 14 12
18 18 C 1.54270 * 106.59916 * 359.97438 * 17 16 14
19 19 C 1.54886 * 104.19472 * 23.61262 * 18 17 16
20 20 H 1.08994 * 110.75554 * 80.37081 * 19 18 17
21 21 C 1.52995 * 110.75638 * 203.74466 * 19 18 17
22 22 H 1.08996 * 109.47381 * 54.66487 * 1 2 3
23 23 H 1.09003 * 109.47268 * 294.66290 * 1 2 3
24 24 H 1.09001 * 109.47241 * 174.66118 * 1 2 3
25 25 H 1.08999 * 109.47586 * 119.99780 * 2 1 3
26 26 H 1.08996 * 109.46976 * 240.00005 * 2 1 3
27 27 H 0.96993 * 120.00140 * 180.02562 * 7 6 4
28 28 H 1.09007 * 110.02928 * 336.99086 * 16 14 12
29 29 H 1.08997 * 110.03712 * 98.37446 * 16 14 12
30 30 H 1.09004 * 110.03270 * 119.28371 * 17 16 14
31 31 H 1.08999 * 110.03148 * 240.71200 * 17 16 14
32 32 H 1.08999 * 110.48302 * 142.28922 * 18 17 16
33 33 H 1.09000 * 110.48193 * 264.80067 * 18 17 16
34 34 H 1.08995 * 109.47561 * 173.32836 * 21 19 18
35 35 H 1.09004 * 109.47082 * 293.32749 * 21 19 18
36 36 H 1.09001 * 109.47427 * 53.32903 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2166 2.0382 1.1869
5 1 1.4437 2.0358 1.9411
6 6 3.4122 2.7071 1.4192
7 7 3.4935 3.5894 2.3898
8 14 4.9037 2.3524 0.3521
9 1 4.9868 3.3618 -0.7338
10 1 6.1331 2.4165 1.1826
11 1 4.7771 0.9968 -0.2407
12 6 2.2725 2.0061 -1.1668
13 8 2.7544 3.1192 -1.1662
14 6 1.9580 1.3219 -2.4722
15 1 1.0559 0.7173 -2.3773
16 6 3.1472 0.4498 -2.9249
17 6 3.2334 0.5843 -4.4553
18 6 2.0930 1.5329 -4.8793
19 6 1.7975 2.3642 -3.6063
20 1 2.5222 3.1706 -3.4947
21 6 0.3708 2.9158 -3.6381
22 1 -0.3634 0.5943 -0.8383
23 1 -0.3634 0.4288 0.9339
24 1 -0.3634 -1.0232 -0.0956
25 1 1.8934 -0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 4.3279 4.0566 2.5518
28 1 4.0689 0.8081 -2.4662
29 1 2.9735 -0.5905 -2.6499
30 1 4.1968 1.0078 -4.7393
31 1 3.1011 -0.3909 -4.9239
32 1 2.4192 2.1822 -5.6917
33 1 1.2135 0.9624 -5.1776
34 1 0.1451 3.3949 -2.6854
35 1 0.2815 3.6463 -4.4422
36 1 -0.3308 2.0994 -3.8093
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000230057426.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:24
Heat of formation + Delta-G solvation = -68.729206 kcal
Electronic energy + Delta-G solvation = -16868.324602 eV
Core-core repulsion = 14351.086552 eV
Total energy + Delta-G solvation = -2517.238050 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.26693 -38.47753 -36.70737 -34.41570 -32.18519 -31.25635 -30.34831 -26.80595
-25.87644 -24.11684 -22.05719 -21.29897 -20.36278 -19.01125 -17.66177 -17.34351
-16.26978 -16.00438 -15.41279 -15.16055 -14.77170 -14.72549 -14.35464 -14.19456
-13.89066 -13.82378 -13.05491 -12.82606 -12.70296 -12.60610 -12.33882 -12.17544
-12.07362 -11.83671 -11.69211 -11.47262 -11.40003 -11.24914 -10.83813 -10.27752
-9.48665 -8.44041 -6.25870 1.16161 1.28458 1.41473 1.98128 2.38787
2.73048 3.06401 3.56149 3.73385 3.82543 4.16837 4.29501 4.37451
4.46992 4.51963 4.53514 4.63898 4.64221 4.69208 4.80109 4.94118
4.98304 5.02475 5.08473 5.09761 5.21204 5.26841 5.36763 5.43531
5.44515 5.58495 5.72160 5.91251 6.80362 6.94979 7.34980 7.93561
8.65688
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.026591 B = 0.012169 C = 0.010688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.731067 B = 2300.346534 C = 2619.180687
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.090 3.910
3 N -0.486 5.486
4 C -0.340 4.340
5 H 0.062 0.938
6 C 0.041 3.959
7 N -0.917 5.917
8 Si 0.959 3.041
9 H -0.289 1.289
10 H -0.300 1.300
11 H -0.255 1.255
12 C 0.461 3.539
13 O -0.597 6.597
14 C -0.103 4.103
15 H 0.116 0.884
16 C -0.119 4.119
17 C -0.116 4.116
18 C -0.107 4.107
19 C -0.088 4.088
20 H 0.049 0.951
21 C -0.135 4.135
22 H 0.053 0.947
23 H 0.036 0.964
24 H 0.096 0.904
25 H 0.071 0.929
26 H 0.091 0.909
27 H 0.271 0.729
28 H 0.028 0.972
29 H 0.094 0.906
30 H 0.057 0.943
31 H 0.096 0.904
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.023 0.977
35 H 0.067 0.933
36 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.501 -11.248 -15.025 19.301
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.032 4.032
3 N -0.209 5.209
4 C -0.467 4.467
5 H 0.080 0.920
6 C -0.162 4.162
7 N -0.556 5.556
8 Si 0.789 3.211
9 H -0.216 1.216
10 H -0.229 1.229
11 H -0.179 1.179
12 C 0.253 3.747
13 O -0.481 6.481
14 C -0.125 4.125
15 H 0.134 0.866
16 C -0.157 4.157
17 C -0.154 4.154
18 C -0.144 4.144
19 C -0.107 4.107
20 H 0.068 0.932
21 C -0.192 4.192
22 H 0.072 0.928
23 H 0.055 0.945
24 H 0.115 0.885
25 H 0.090 0.910
26 H 0.109 0.891
27 H 0.080 0.920
28 H 0.047 0.953
29 H 0.112 0.888
30 H 0.076 0.924
31 H 0.115 0.885
32 H 0.093 0.907
33 H 0.111 0.889
34 H 0.042 0.958
35 H 0.086 0.914
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -4.183 -10.614 -14.882 18.752
hybrid contribution 0.900 0.718 0.638 1.316
sum -3.283 -9.896 -14.245 17.653
Atomic orbital electron populations
1.22087 0.94858 1.03093 1.01306 1.21882 0.95696 0.82614 1.02992
1.43948 1.60580 1.12319 1.04010 1.18679 1.00627 1.32680 0.94762
0.92034 1.26036 1.00977 0.93642 0.95590 1.69825 1.27857 1.24208
1.33668 0.85534 0.77964 0.79197 0.78448 1.21599 1.22914 1.17893
1.21490 0.80305 0.86034 0.86899 1.90475 1.47380 1.22817 1.87455
1.22317 1.01102 0.98057 0.90996 0.86626 1.22201 0.95674 0.99985
0.97815 1.22116 0.99021 1.01219 0.93000 1.22401 0.99190 0.97289
0.95549 1.22024 0.97923 0.96599 0.94199 0.93206 1.21684 0.95341
1.01555 1.00653 0.92837 0.94488 0.88537 0.91050 0.89104 0.91966
0.95289 0.88766 0.92381 0.88511 0.90669 0.88861 0.95791 0.91373
0.90262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.52 10.03 71.98 0.72 -3.80 16
2 C 0.09 3.18 5.69 86.38 0.49 3.67 16
3 N -0.49 -23.56 2.04 -635.53 -1.30 -24.86 16
4 C -0.34 -20.19 9.62 84.04 0.81 -19.39 16
5 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16
6 C 0.04 2.55 4.92 84.93 0.42 2.96 16
7 N -0.92 -60.01 13.96 21.66 0.30 -59.71 16
8 Si 0.96 52.73 24.91 68.60 1.71 54.44 16
9 H -0.29 -17.09 6.55 99.48 0.65 -16.44 16
10 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16
11 H -0.25 -12.78 6.89 99.48 0.69 -12.09 16
12 C 0.46 22.09 5.09 87.66 0.45 22.54 16
13 O -0.60 -34.77 11.76 -3.09 -0.04 -34.81 16
14 C -0.10 -3.49 1.71 -10.47 -0.02 -3.51 16
15 H 0.12 3.24 5.98 -2.38 -0.01 3.22 16
16 C -0.12 -3.47 5.91 31.32 0.19 -3.29 16
17 C -0.12 -2.54 6.80 31.32 0.21 -2.33 16
18 C -0.11 -2.29 6.27 31.67 0.20 -2.09 16
19 C -0.09 -2.77 2.74 -9.51 -0.03 -2.79 16
20 H 0.05 1.96 7.25 -2.39 -0.02 1.95 16
21 C -0.14 -3.77 9.28 71.98 0.67 -3.11 16
22 H 0.05 1.53 7.20 -2.39 -0.02 1.51 16
23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
25 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16
26 H 0.09 2.58 5.52 -2.39 -0.01 2.57 16
27 H 0.27 16.74 8.31 -92.71 -0.77 15.97 16
28 H 0.03 1.05 7.62 -2.38 -0.02 1.03 16
29 H 0.09 2.19 7.28 -2.39 -0.02 2.17 16
30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
33 H 0.09 1.52 8.02 -2.39 -0.02 1.50 16
34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16
36 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16
Total: -1.00 -77.65 279.67 5.75 -71.91
By element:
Atomic # 1 Polarization: 3.20 SS G_CDS: 0.96 Total: 4.16 kcal
Atomic # 6 Polarization: -15.24 SS G_CDS: 4.11 Total: -11.13 kcal
Atomic # 7 Polarization: -83.57 SS G_CDS: -0.99 Total: -84.56 kcal
Atomic # 8 Polarization: -34.77 SS G_CDS: -0.04 Total: -34.81 kcal
Atomic # 14 Polarization: 52.73 SS G_CDS: 1.71 Total: 54.44 kcal
Total: -77.65 5.75 -71.91 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230057426.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.177 kcal
(2) G-P(sol) polarization free energy of solvation -77.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds