Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47085 * 2 1 4 4 C 1.37106 * 119.99715 * 265.27388 * 3 2 1 5 5 H 1.08004 * 119.99814 * 140.89511 * 4 3 2 6 6 C 1.38952 * 120.00181 * 320.89614 * 4 3 2 7 7 N 1.31404 * 120.00106 * 175.03856 * 6 4 3 8 8 Si 1.86805 * 119.99767 * 355.03936 * 6 4 3 9 9 H 1.48498 * 109.46916 * 95.83847 * 8 6 4 10 10 H 1.48497 * 109.47140 * 335.84045 * 8 6 4 11 11 H 1.48496 * 109.46762 * 215.83628 * 8 6 4 12 12 C 1.34771 * 120.00046 * 85.27484 * 3 2 1 13 13 O 1.21298 * 119.99709 * 174.45550 * 12 3 2 14 14 C 1.50691 * 120.00531 * 354.45476 * 12 3 2 15 15 H 1.09007 * 110.01163 * 18.25338 * 14 12 3 16 16 C 1.54264 * 110.03500 * 139.64027 * 14 12 3 17 17 C 1.54972 * 104.15881 * 142.86411 * 16 14 12 18 18 C 1.54895 * 102.77818 * 322.11747 * 17 16 14 19 19 C 1.53876 * 110.03426 * 256.86353 * 14 12 3 20 20 H 1.09002 * 110.03031 * 121.37909 * 19 14 12 21 21 C 1.52997 * 110.02950 * 359.97438 * 19 14 12 22 22 H 1.09003 * 109.47176 * 304.25847 * 1 2 3 23 23 H 1.09003 * 109.46837 * 64.25323 * 1 2 3 24 24 H 1.08994 * 109.46935 * 184.24985 * 1 2 3 25 25 H 1.09003 * 109.47185 * 239.99837 * 2 1 3 26 26 H 1.08993 * 109.46912 * 119.99522 * 2 1 3 27 27 H 0.96997 * 120.00014 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.48976 * 261.57698 * 16 14 12 29 29 H 1.08999 * 110.48648 * 24.22828 * 16 14 12 30 30 H 1.08997 * 110.76708 * 203.78086 * 17 16 14 31 31 H 1.09006 * 110.87315 * 80.49931 * 17 16 14 32 32 H 1.08998 * 110.48427 * 279.23639 * 18 17 16 33 33 H 1.08999 * 110.59768 * 156.64699 * 18 17 16 34 34 H 1.08995 * 109.47793 * 57.45725 * 21 19 14 35 35 H 1.09001 * 109.46917 * 177.46165 * 21 19 14 36 36 H 1.08999 * 109.47063 * 297.45158 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3391 1.9949 -1.1834 5 1 2.0924 3.0352 -1.3364 6 6 2.9815 1.2785 -2.1858 7 7 3.2016 1.8370 -3.3547 8 14 3.5321 -0.4787 -1.8717 9 1 2.4990 -1.4188 -2.3758 10 1 3.7199 -0.6854 -0.4132 11 1 4.8151 -0.7288 -2.5764 12 6 2.1524 2.0486 1.1632 13 8 2.6504 3.1546 1.1739 14 6 1.6834 1.4210 2.4504 15 1 1.5707 0.3445 2.3212 16 6 2.6922 1.7149 3.5799 17 6 1.8060 1.9322 4.8325 18 6 0.5850 2.6944 4.2603 19 6 0.3441 2.0430 2.8829 20 1 -0.4186 1.2684 2.9636 21 6 -0.0918 3.1044 1.8708 22 1 -0.3634 0.5785 0.8494 23 1 -0.3633 0.4464 -0.9257 24 1 -0.3633 -1.0248 0.0762 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.6503 1.3370 -4.0543 28 1 3.3593 0.8654 3.7262 29 1 3.2635 2.6158 3.3562 30 1 2.3268 2.5381 5.5739 31 1 1.4995 0.9782 5.2617 32 1 0.8156 3.7536 4.1464 33 1 -0.2855 2.5614 4.9027 34 1 -0.1670 2.6539 0.8812 35 1 -1.0622 3.5068 2.1615 36 1 0.6432 3.9091 1.8489 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230057430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = -33.841675 kcal Electronic energy + Delta-G solvation = -16885.579581 eV Core-core repulsion = 14369.854367 eV Total energy + Delta-G solvation = -2515.725213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79099 -36.92490 -35.07798 -32.24356 -30.90614 -29.69619 -28.92000 -25.23859 -24.31829 -23.09031 -20.71446 -20.31535 -17.77145 -16.92065 -16.56359 -15.74289 -15.22431 -14.47683 -14.09904 -13.46293 -13.24940 -13.14239 -12.74074 -12.57647 -12.30121 -11.86465 -11.63634 -11.35733 -11.10578 -10.98745 -10.81524 -10.69574 -10.49450 -10.41307 -10.30543 -10.12288 -9.98460 -9.56869 -9.00501 -8.34530 -7.68285 -6.28604 -3.95275 3.05681 3.19764 3.24410 3.77695 4.16613 4.44769 4.83352 4.91533 5.02770 5.15265 5.45393 5.57180 5.60710 5.70830 5.75808 5.83842 5.86668 5.91661 5.95189 5.96713 6.12491 6.15639 6.25423 6.31739 6.38770 6.39199 6.50388 6.61283 6.68947 6.74742 6.92373 7.65615 8.33607 8.59311 9.02994 9.37478 9.86067 10.83539 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037039 B = 0.009706 C = 0.009625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.784323 B = 2884.141522 C = 2908.262110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 N -0.473 5.473 4 C -0.305 4.305 5 H 0.104 0.896 6 C 0.051 3.949 7 N -0.879 5.879 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.294 1.294 12 C 0.485 3.515 13 O -0.562 6.562 14 C -0.115 4.115 15 H 0.080 0.920 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.075 4.075 20 H 0.069 0.931 21 C -0.157 4.157 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.272 0.728 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 -5.182 12.288 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.031 4.031 3 N -0.195 5.195 4 C -0.433 4.433 5 H 0.122 0.878 6 C -0.153 4.153 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.222 1.222 12 C 0.274 3.726 13 O -0.443 6.443 14 C -0.137 4.137 15 H 0.098 0.902 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.094 4.094 20 H 0.087 0.913 21 C -0.215 4.215 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.441 -4.628 12.059 14.016 hybrid contribution 0.230 -1.174 -0.208 1.214 sum -5.212 -5.802 11.852 14.187 Atomic orbital electron populations 1.22273 0.96454 1.00961 1.03110 1.21842 0.94457 0.86539 1.00259 1.43810 1.58310 1.11193 1.06188 1.19093 1.36457 0.98518 0.89234 0.87838 1.25423 0.95439 0.98916 0.95520 1.69640 1.41033 1.37646 1.03332 0.86677 0.77674 0.84355 0.78509 1.20521 1.19289 1.22185 1.19943 0.81393 0.87285 0.83999 1.90531 1.46781 1.20896 1.86093 1.22096 0.96158 1.00467 0.94949 0.90168 1.22333 0.97071 1.02492 0.93027 1.22473 0.96482 0.99760 0.97225 1.22438 0.97464 1.00096 0.95486 1.21567 0.95290 0.97522 0.95040 0.91304 1.22117 1.00725 0.99661 0.98955 0.92119 0.91642 0.92830 0.92384 0.91778 0.91756 0.92117 0.89860 0.91831 0.91949 0.91288 0.92176 0.91808 0.93668 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.99 37.16 0.37 -2.51 16 2 C 0.09 1.88 3.81 -4.04 -0.02 1.86 16 3 N -0.47 -11.51 2.25 -114.81 -0.26 -11.76 16 4 C -0.31 -8.75 9.45 -14.93 -0.14 -8.89 16 5 H 0.10 3.33 7.99 -52.48 -0.42 2.91 16 6 C 0.05 1.45 5.48 -17.47 -0.10 1.35 16 7 N -0.88 -26.18 13.96 55.50 0.77 -25.40 16 8 Si 0.90 21.33 24.57 -169.99 -4.18 17.15 16 9 H -0.28 -6.21 7.02 56.52 0.40 -5.81 16 10 H -0.27 -6.09 6.23 56.52 0.35 -5.74 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.49 11.24 4.45 -10.99 -0.05 11.19 16 13 O -0.56 -15.09 14.50 5.54 0.08 -15.01 16 14 C -0.11 -2.03 2.43 -90.66 -0.22 -2.25 16 15 H 0.08 1.30 5.62 -51.92 -0.29 1.01 16 16 C -0.11 -1.78 6.32 -25.03 -0.16 -1.94 16 17 C -0.12 -1.55 6.91 -24.69 -0.17 -1.72 16 18 C -0.12 -1.56 6.36 -25.07 -0.16 -1.72 16 19 C -0.08 -1.15 2.62 -89.50 -0.23 -1.39 16 20 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 21 C -0.16 -2.74 7.77 37.16 0.29 -2.45 16 22 H 0.06 0.96 5.07 -51.93 -0.26 0.70 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.26 2.44 -51.93 -0.13 1.14 16 26 H 0.06 1.15 6.18 -51.93 -0.32 0.83 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.54 7.07 -51.93 -0.37 1.17 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.98 7.80 -51.93 -0.40 0.57 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.24 6.20 -51.93 -0.32 0.91 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.48 6.58 -51.93 -0.34 1.14 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -31.44 269.25 -5.52 -36.95 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.41 Total: 2.49 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.58 Total: -8.47 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.52 Total: -37.17 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.18 Total: 17.15 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.44 -5.52 -36.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230057430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.112 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds