Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47085 * 2 1 4 4 C 1.37106 * 119.99715 * 265.27388 * 3 2 1 5 5 H 1.08004 * 119.99814 * 140.89511 * 4 3 2 6 6 C 1.38952 * 120.00181 * 320.89614 * 4 3 2 7 7 N 1.31404 * 120.00106 * 175.03856 * 6 4 3 8 8 Si 1.86805 * 119.99767 * 355.03936 * 6 4 3 9 9 H 1.48498 * 109.46916 * 95.83847 * 8 6 4 10 10 H 1.48497 * 109.47140 * 335.84045 * 8 6 4 11 11 H 1.48496 * 109.46762 * 215.83628 * 8 6 4 12 12 C 1.34771 * 120.00046 * 85.27484 * 3 2 1 13 13 O 1.21298 * 119.99709 * 174.45550 * 12 3 2 14 14 C 1.50691 * 120.00531 * 354.45476 * 12 3 2 15 15 H 1.09007 * 110.01163 * 18.25338 * 14 12 3 16 16 C 1.54264 * 110.03500 * 139.64027 * 14 12 3 17 17 C 1.54972 * 104.15881 * 142.86411 * 16 14 12 18 18 C 1.54895 * 102.77818 * 322.11747 * 17 16 14 19 19 C 1.53876 * 110.03426 * 256.86353 * 14 12 3 20 20 H 1.09002 * 110.03031 * 121.37909 * 19 14 12 21 21 C 1.52997 * 110.02950 * 359.97438 * 19 14 12 22 22 H 1.09003 * 109.47176 * 304.25847 * 1 2 3 23 23 H 1.09003 * 109.46837 * 64.25323 * 1 2 3 24 24 H 1.08994 * 109.46935 * 184.24985 * 1 2 3 25 25 H 1.09003 * 109.47185 * 239.99837 * 2 1 3 26 26 H 1.08993 * 109.46912 * 119.99522 * 2 1 3 27 27 H 0.96997 * 120.00014 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.48976 * 261.57698 * 16 14 12 29 29 H 1.08999 * 110.48648 * 24.22828 * 16 14 12 30 30 H 1.08997 * 110.76708 * 203.78086 * 17 16 14 31 31 H 1.09006 * 110.87315 * 80.49931 * 17 16 14 32 32 H 1.08998 * 110.48427 * 279.23639 * 18 17 16 33 33 H 1.08999 * 110.59768 * 156.64699 * 18 17 16 34 34 H 1.08995 * 109.47793 * 57.45725 * 21 19 14 35 35 H 1.09001 * 109.46917 * 177.46165 * 21 19 14 36 36 H 1.08999 * 109.47063 * 297.45158 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3391 1.9949 -1.1834 5 1 2.0924 3.0352 -1.3364 6 6 2.9815 1.2785 -2.1858 7 7 3.2016 1.8370 -3.3547 8 14 3.5321 -0.4787 -1.8717 9 1 2.4990 -1.4188 -2.3758 10 1 3.7199 -0.6854 -0.4132 11 1 4.8151 -0.7288 -2.5764 12 6 2.1524 2.0486 1.1632 13 8 2.6504 3.1546 1.1739 14 6 1.6834 1.4210 2.4504 15 1 1.5707 0.3445 2.3212 16 6 2.6922 1.7149 3.5799 17 6 1.8060 1.9322 4.8325 18 6 0.5850 2.6944 4.2603 19 6 0.3441 2.0430 2.8829 20 1 -0.4186 1.2684 2.9636 21 6 -0.0918 3.1044 1.8708 22 1 -0.3634 0.5785 0.8494 23 1 -0.3633 0.4464 -0.9257 24 1 -0.3633 -1.0248 0.0762 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.6503 1.3370 -4.0543 28 1 3.3593 0.8654 3.7262 29 1 3.2635 2.6158 3.3562 30 1 2.3268 2.5381 5.5739 31 1 1.4995 0.9782 5.2617 32 1 0.8156 3.7536 4.1464 33 1 -0.2855 2.5614 4.9027 34 1 -0.1670 2.6539 0.8812 35 1 -1.0622 3.5068 2.1615 36 1 0.6432 3.9091 1.8489 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230057430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = -55.095256 kcal Electronic energy + Delta-G solvation = -16886.501205 eV Core-core repulsion = 14369.854367 eV Total energy + Delta-G solvation = -2516.646838 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41495 -38.39672 -36.94548 -34.33327 -32.18425 -31.35261 -30.29326 -27.01434 -25.82038 -24.65054 -22.27176 -21.48741 -19.48389 -18.82005 -18.21345 -17.52010 -16.66589 -15.90617 -15.72788 -15.06960 -14.79392 -14.68566 -14.31062 -14.16960 -14.13054 -13.33310 -13.11820 -12.89118 -12.70690 -12.48279 -12.43747 -12.00185 -11.87095 -11.71574 -11.59012 -11.52825 -11.40378 -11.24634 -11.02433 -10.20307 -9.67599 -8.46543 -6.18942 1.17241 1.29322 1.39490 1.99408 2.16462 2.72918 2.96366 3.61618 3.73568 3.80578 3.92388 4.24448 4.29087 4.39219 4.44010 4.47176 4.64022 4.65401 4.68824 4.82922 4.91991 4.94749 4.97618 5.01832 5.13005 5.25176 5.28059 5.31999 5.40457 5.49051 5.59846 5.61116 6.01795 6.60191 6.96331 7.32473 7.93548 8.70558 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037039 B = 0.009706 C = 0.009625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.784323 B = 2884.141522 C = 2908.262110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 N -0.486 5.486 4 C -0.317 4.317 5 H 0.039 0.961 6 C -0.006 4.006 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.247 1.247 10 H -0.247 1.247 11 H -0.299 1.299 12 C 0.480 3.520 13 O -0.614 6.614 14 C -0.110 4.110 15 H 0.108 0.892 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.073 4.073 20 H 0.106 0.894 21 C -0.153 4.153 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.277 0.723 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -8.919 15.394 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.040 4.040 3 N -0.208 5.208 4 C -0.446 4.446 5 H 0.057 0.943 6 C -0.206 4.206 7 N -0.569 5.569 8 Si 0.796 3.204 9 H -0.172 1.172 10 H -0.171 1.171 11 H -0.228 1.228 12 C 0.271 3.729 13 O -0.499 6.499 14 C -0.131 4.131 15 H 0.126 0.874 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.092 4.092 20 H 0.124 0.876 21 C -0.210 4.210 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.801 -8.377 15.184 18.627 hybrid contribution 0.621 0.160 -1.192 1.354 sum -6.181 -8.217 13.992 17.363 Atomic orbital electron populations 1.22228 0.93822 1.03696 1.02352 1.22145 0.96824 0.83748 1.01298 1.43963 1.58927 1.12963 1.04947 1.18674 1.37571 0.96535 0.91804 0.94321 1.26364 0.94959 1.04575 0.94665 1.69804 1.42277 1.40185 1.04636 0.85529 0.77371 0.78013 0.79515 1.17223 1.17077 1.22791 1.21073 0.79750 0.86500 0.85579 1.90503 1.48767 1.23455 1.87167 1.22214 0.97763 1.01483 0.91684 0.87434 1.22388 0.97387 1.01482 0.94261 1.22462 0.95140 1.01426 0.95651 1.22448 0.99293 0.98859 0.94708 1.21685 0.94676 0.97615 0.95178 0.87591 1.22034 1.01113 0.99275 0.98598 0.90990 0.94215 0.88418 0.93511 0.88164 0.91369 0.90348 0.93655 0.90703 0.88760 0.93350 0.88738 0.94554 0.90887 0.94892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.99 71.98 0.72 -4.27 16 2 C 0.08 3.08 3.81 86.38 0.33 3.41 16 3 N -0.49 -23.90 2.25 -635.53 -1.43 -25.33 16 4 C -0.32 -19.28 9.45 84.04 0.79 -18.49 16 5 H 0.04 2.77 7.99 -2.91 -0.02 2.74 16 6 C -0.01 -0.36 5.48 84.93 0.47 0.10 16 7 N -0.93 -58.21 13.96 21.66 0.30 -57.91 16 8 Si 0.97 43.66 24.57 68.60 1.69 45.35 16 9 H -0.25 -9.84 7.02 99.48 0.70 -9.14 16 10 H -0.25 -10.15 6.23 99.48 0.62 -9.53 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.48 22.61 4.45 87.65 0.39 23.00 16 13 O -0.61 -35.20 14.50 -3.08 -0.04 -35.25 16 14 C -0.11 -3.60 2.43 -10.82 -0.03 -3.62 16 15 H 0.11 2.92 5.62 -2.38 -0.01 2.90 16 16 C -0.12 -3.47 6.32 31.70 0.20 -3.27 16 17 C -0.11 -2.30 6.91 31.92 0.22 -2.08 16 18 C -0.12 -2.65 6.36 31.67 0.20 -2.45 16 19 C -0.07 -2.00 2.62 -10.07 -0.03 -2.02 16 20 H 0.11 2.22 7.78 -2.39 -0.02 2.20 16 21 C -0.15 -5.31 7.77 71.98 0.56 -4.75 16 22 H 0.07 2.02 5.07 -2.39 -0.01 2.01 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.05 1.88 2.44 -2.39 -0.01 1.88 16 26 H 0.10 3.05 6.18 -2.39 -0.01 3.04 16 27 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.68 7.07 -2.39 -0.02 1.67 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.30 7.80 -2.39 -0.02 1.29 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.43 6.20 -2.39 -0.01 1.41 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.03 1.38 6.58 -2.39 -0.02 1.37 16 Total: -1.00 -76.87 269.25 5.30 -71.57 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.96 Total: 16.03 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 3.83 Total: -14.45 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.13 Total: -83.24 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.04 Total: -35.25 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.69 Total: 45.35 kcal Total: -76.87 5.30 -71.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230057430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.475 kcal (2) G-P(sol) polarization free energy of solvation -76.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds