Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00193 * 2 1 4 4 O 1.42899 * 109.46879 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46946 * 240.00317 * 3 2 1 6 6 C 1.53000 * 109.46960 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47018 * 59.99792 * 6 5 3 8 8 C 1.52998 * 109.47100 * 300.00031 * 7 6 5 9 9 C 1.52995 * 109.47440 * 60.00333 * 8 7 6 10 10 H 1.08993 * 109.47420 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47154 * 59.99746 * 9 8 7 12 12 C 1.46499 * 120.00112 * 117.57619 * 11 9 8 13 13 C 1.36941 * 119.99892 * 297.57702 * 11 9 8 14 14 H 1.07995 * 120.00277 * 5.73024 * 13 11 9 15 15 C 1.38811 * 119.99903 * 185.73500 * 13 11 9 16 16 N 1.31620 * 119.99924 * 351.18237 * 15 13 11 17 17 Si 1.86801 * 120.00203 * 171.18317 * 15 13 11 18 18 H 1.48499 * 109.47073 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47107 * 119.99759 * 17 15 13 20 20 H 1.48496 * 109.47254 * 239.99864 * 17 15 13 21 21 H 1.08000 * 119.99774 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00024 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.00061 * 179.97438 * 2 1 3 24 24 H 0.96702 * 114.00240 * 300.00339 * 4 3 2 25 25 H 1.09005 * 109.46735 * 299.99405 * 5 3 2 26 26 H 1.08995 * 109.47354 * 59.99686 * 5 3 2 27 27 H 1.09002 * 109.47446 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47318 * 299.99840 * 6 5 3 29 29 H 1.09006 * 109.46524 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47032 * 60.00492 * 7 6 5 31 31 H 1.09004 * 109.47050 * 299.99837 * 8 7 6 32 32 H 1.09004 * 109.47081 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.46681 * 358.92234 * 12 11 9 34 34 H 1.09002 * 109.46892 * 118.91814 * 12 11 9 35 35 H 1.08997 * 109.46999 * 238.91629 * 12 11 9 36 36 H 0.97002 * 119.99978 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.1349 2.3912 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 3.7077 2.7114 -1.2496 7 6 4.5873 2.7930 -0.0004 8 6 3.7077 2.7120 1.2489 9 6 2.9431 1.3867 1.2493 10 1 2.3162 1.3292 2.1390 11 7 3.8955 0.2736 1.2495 12 6 3.9254 -0.6645 2.3744 13 6 4.7577 0.1099 0.1983 14 1 4.8004 0.8515 -0.5856 15 6 5.5769 -1.0092 0.1403 16 7 5.6539 -1.8226 1.1723 17 14 6.5699 -1.3610 -1.4022 18 1 6.3083 -0.3033 -2.4112 19 1 8.0164 -1.3785 -1.0665 20 1 6.1741 -2.6809 -1.9555 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 0.5438 2.4030 -0.7659 25 1 3.6514 0.5576 -1.2492 26 1 2.3165 1.3284 -2.1392 27 1 4.3346 2.7690 -2.1394 28 1 2.9991 3.5397 -1.2498 29 1 5.1323 3.7370 -0.0009 30 1 5.2959 1.9648 -0.0002 31 1 2.9991 3.5403 1.2486 32 1 4.3343 2.7706 2.1389 33 1 3.1867 -0.3643 3.1175 34 1 3.6942 -1.6679 2.0169 35 1 4.9177 -0.6593 2.8255 36 1 6.2260 -2.6048 1.1316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250402491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = 32.936730 kcal Electronic energy + Delta-G solvation = -17348.665043 eV Core-core repulsion = 14835.835559 eV Total energy + Delta-G solvation = -2512.829484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63408 -35.78578 -33.65055 -32.14618 -31.30155 -29.19261 -27.87515 -26.07590 -22.81034 -22.16213 -20.98066 -19.10166 -18.77156 -17.05611 -15.91496 -15.61761 -14.61513 -14.23331 -13.66631 -13.22001 -13.10640 -12.79710 -12.08667 -12.02754 -11.71853 -11.38820 -11.37233 -11.12325 -10.87695 -10.72184 -10.62216 -10.39995 -10.17236 -10.10354 -9.87036 -9.49293 -9.15430 -8.65666 -8.49938 -8.15542 -6.87873 -5.69189 -3.06193 2.84514 3.34310 3.41059 3.43561 4.41918 4.78609 5.32989 5.39544 5.55185 5.60258 5.79381 5.87793 5.93375 6.10390 6.21657 6.30482 6.35198 6.47975 6.50568 6.61293 6.76190 6.81696 6.93797 6.96871 7.07952 7.20467 7.22542 7.35484 7.42119 7.68414 7.73875 7.93438 8.23643 8.35888 9.23731 9.89289 10.34262 11.30464 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.012778 C = 0.011707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.731964 B = 2190.808975 C = 2391.107092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.135 4.135 3 C 0.150 3.850 4 O -0.562 6.562 5 C -0.177 4.177 6 C -0.105 4.105 7 C -0.150 4.150 8 C -0.115 4.115 9 C 0.202 3.798 10 H 0.056 0.944 11 N -0.598 5.598 12 C 0.170 3.830 13 C -0.270 4.270 14 H 0.126 0.874 15 C -0.004 4.004 16 N -0.909 5.909 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.290 1.290 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.120 0.880 24 H 0.361 0.639 25 H 0.139 0.861 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.051 0.949 33 H -0.010 1.010 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 5.422 -2.899 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.153 4.153 3 C 0.108 3.892 4 O -0.367 6.367 5 C -0.213 4.213 6 C -0.143 4.143 7 C -0.187 4.187 8 C -0.155 4.155 9 C 0.092 3.908 10 H 0.074 0.926 11 N -0.322 5.322 12 C 0.026 3.974 13 C -0.397 4.397 14 H 0.143 0.857 15 C -0.201 4.201 16 N -0.556 5.556 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.216 1.216 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.138 0.862 24 H 0.207 0.793 25 H 0.156 0.844 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.551 5.390 -2.294 8.071 hybrid contribution 0.168 -0.499 -1.361 1.459 sum -5.383 4.891 -3.655 8.140 Atomic orbital electron populations 1.23596 0.96185 1.01010 1.05723 1.23703 0.95709 1.00314 0.95566 1.20836 0.87510 0.82596 0.98243 1.86524 1.50865 1.50579 1.48712 1.23059 1.00958 1.02034 0.95276 1.21321 0.98064 0.97220 0.97665 1.22267 0.99785 1.02659 0.93987 1.21813 0.98215 0.97727 0.97695 1.19975 0.89199 0.88530 0.93059 0.92599 1.43970 1.37809 1.28923 1.21533 1.21075 0.97399 0.92317 0.86566 1.20315 1.13929 1.04500 1.01003 0.85713 1.24966 0.99953 0.97747 0.97458 1.70263 1.41440 1.15968 1.27938 0.86336 0.79947 0.78256 0.83188 1.20132 1.21726 1.21636 0.88743 0.89361 0.86216 0.79270 0.84425 0.94461 0.93438 0.93170 0.94608 0.86266 0.93164 0.93006 0.99134 0.94255 0.93667 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.67 13.93 29.02 0.40 -3.26 16 2 C -0.13 -2.52 8.39 -36.02 -0.30 -2.83 16 3 C 0.15 2.84 0.74 -91.77 -0.07 2.77 16 4 O -0.56 -9.61 10.59 -35.23 -0.37 -9.99 16 5 C -0.18 -3.34 4.52 -26.73 -0.12 -3.46 16 6 C -0.11 -1.88 5.44 -26.73 -0.15 -2.03 16 7 C -0.15 -2.90 5.55 -26.73 -0.15 -3.05 16 8 C -0.12 -2.27 5.48 -26.73 -0.15 -2.41 16 9 C 0.20 4.22 2.47 -67.93 -0.17 4.05 16 10 H 0.06 1.19 7.55 -51.93 -0.39 0.80 16 11 N -0.60 -14.14 2.40 -173.49 -0.42 -14.56 16 12 C 0.17 4.17 9.01 59.85 0.54 4.71 16 13 C -0.27 -6.67 5.56 -15.06 -0.08 -6.75 16 14 H 0.13 2.93 2.29 -52.49 -0.12 2.81 16 15 C 0.00 -0.11 5.44 -17.43 -0.09 -0.21 16 16 N -0.91 -25.22 9.48 55.49 0.53 -24.69 16 17 Si 0.89 20.80 29.56 -169.99 -5.03 15.77 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H 0.09 1.38 6.41 -52.49 -0.34 1.05 16 22 H 0.09 1.30 8.06 -52.49 -0.42 0.88 16 23 H 0.12 2.53 8.00 -52.49 -0.42 2.12 16 24 H 0.36 4.95 8.05 45.56 0.37 5.32 16 25 H 0.14 2.99 4.05 -51.93 -0.21 2.78 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.85 7.68 -51.93 -0.40 0.46 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.12 2.62 4.26 -51.93 -0.22 2.40 16 31 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H -0.01 -0.22 7.55 -51.93 -0.39 -0.61 16 34 H 0.04 1.03 7.03 -51.93 -0.36 0.67 16 35 H 0.04 1.20 7.07 -51.93 -0.37 0.83 16 36 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -26.68 266.46 -6.11 -32.80 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.50 Total: 9.12 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.33 Total: -12.47 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.11 Total: -39.25 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.37 Total: -9.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.68 -6.11 -32.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250402491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.734 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds