Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00193 * 2 1 4 4 O 1.42899 * 109.46879 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46946 * 240.00317 * 3 2 1 6 6 C 1.53000 * 109.46960 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47018 * 59.99792 * 6 5 3 8 8 C 1.52998 * 109.47100 * 300.00031 * 7 6 5 9 9 C 1.52995 * 109.47440 * 60.00333 * 8 7 6 10 10 H 1.08993 * 109.47420 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47154 * 59.99746 * 9 8 7 12 12 C 1.46499 * 120.00112 * 117.57619 * 11 9 8 13 13 C 1.36941 * 119.99892 * 297.57702 * 11 9 8 14 14 H 1.07995 * 120.00277 * 5.73024 * 13 11 9 15 15 C 1.38811 * 119.99903 * 185.73500 * 13 11 9 16 16 N 1.31620 * 119.99924 * 351.18237 * 15 13 11 17 17 Si 1.86801 * 120.00203 * 171.18317 * 15 13 11 18 18 H 1.48499 * 109.47073 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47107 * 119.99759 * 17 15 13 20 20 H 1.48496 * 109.47254 * 239.99864 * 17 15 13 21 21 H 1.08000 * 119.99774 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00024 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.00061 * 179.97438 * 2 1 3 24 24 H 0.96702 * 114.00240 * 300.00339 * 4 3 2 25 25 H 1.09005 * 109.46735 * 299.99405 * 5 3 2 26 26 H 1.08995 * 109.47354 * 59.99686 * 5 3 2 27 27 H 1.09002 * 109.47446 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47318 * 299.99840 * 6 5 3 29 29 H 1.09006 * 109.46524 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47032 * 60.00492 * 7 6 5 31 31 H 1.09004 * 109.47050 * 299.99837 * 8 7 6 32 32 H 1.09004 * 109.47081 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.46681 * 358.92234 * 12 11 9 34 34 H 1.09002 * 109.46892 * 118.91814 * 12 11 9 35 35 H 1.08997 * 109.46999 * 238.91629 * 12 11 9 36 36 H 0.97002 * 119.99978 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.1349 2.3912 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 3.7077 2.7114 -1.2496 7 6 4.5873 2.7930 -0.0004 8 6 3.7077 2.7120 1.2489 9 6 2.9431 1.3867 1.2493 10 1 2.3162 1.3292 2.1390 11 7 3.8955 0.2736 1.2495 12 6 3.9254 -0.6645 2.3744 13 6 4.7577 0.1099 0.1983 14 1 4.8004 0.8515 -0.5856 15 6 5.5769 -1.0092 0.1403 16 7 5.6539 -1.8226 1.1723 17 14 6.5699 -1.3610 -1.4022 18 1 6.3083 -0.3033 -2.4112 19 1 8.0164 -1.3785 -1.0665 20 1 6.1741 -2.6809 -1.9555 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 0.5438 2.4030 -0.7659 25 1 3.6514 0.5576 -1.2492 26 1 2.3165 1.3284 -2.1392 27 1 4.3346 2.7690 -2.1394 28 1 2.9991 3.5397 -1.2498 29 1 5.1323 3.7370 -0.0009 30 1 5.2959 1.9648 -0.0002 31 1 2.9991 3.5403 1.2486 32 1 4.3343 2.7706 2.1389 33 1 3.1867 -0.3643 3.1175 34 1 3.6942 -1.6679 2.0169 35 1 4.9177 -0.6593 2.8255 36 1 6.2260 -2.6048 1.1316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250402491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = 16.543051 kcal Electronic energy + Delta-G solvation = -17349.375926 eV Core-core repulsion = 14835.835559 eV Total energy + Delta-G solvation = -2513.540368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19881 -37.36716 -35.33882 -33.61475 -33.03490 -30.82150 -29.47360 -28.02614 -24.56104 -23.65006 -22.68456 -20.58948 -20.36634 -18.85771 -17.33606 -17.13884 -16.40347 -15.86972 -15.26014 -14.99193 -14.74122 -14.38272 -13.83566 -13.65683 -13.19832 -13.08475 -13.00678 -12.79340 -12.73400 -12.34834 -12.20902 -12.06596 -11.92198 -11.87700 -11.43251 -10.98634 -10.64645 -10.48520 -10.03400 -9.91958 -8.80286 -7.66865 -5.03884 1.46053 1.48155 1.50399 1.57400 2.54122 3.22883 3.46410 3.92210 3.99738 4.05657 4.19687 4.42179 4.52718 4.60863 4.70313 4.79093 4.83088 4.84802 4.99592 5.08537 5.17420 5.23450 5.42281 5.44288 5.52731 5.57777 5.67958 5.69913 5.83854 5.90004 5.95233 5.98337 6.38859 7.00520 7.25508 7.98273 8.39787 9.33599 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.012778 C = 0.011707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.731964 B = 2190.808975 C = 2391.107092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.164 3.836 4 O -0.561 6.561 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.149 4.149 8 C -0.111 4.111 9 C 0.192 3.808 10 H 0.049 0.951 11 N -0.606 5.606 12 C 0.187 3.813 13 C -0.247 4.247 14 H 0.143 0.857 15 C -0.068 4.068 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.256 1.256 19 H -0.301 1.301 20 H -0.300 1.300 21 H 0.117 0.883 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.381 0.619 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.017 0.983 36 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 7.592 -4.335 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.188 4.188 3 C 0.122 3.878 4 O -0.368 6.368 5 C -0.212 4.212 6 C -0.138 4.138 7 C -0.186 4.186 8 C -0.150 4.150 9 C 0.085 3.915 10 H 0.068 0.932 11 N -0.330 5.330 12 C 0.042 3.958 13 C -0.375 4.375 14 H 0.160 0.840 15 C -0.261 4.261 16 N -0.598 5.598 17 Si 0.775 3.225 18 H -0.180 1.180 19 H -0.228 1.228 20 H -0.228 1.228 21 H 0.135 0.865 22 H 0.119 0.881 23 H 0.104 0.896 24 H 0.230 0.770 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.365 7.606 -3.762 11.236 hybrid contribution 0.553 -1.071 -0.885 1.495 sum -6.812 6.536 -4.647 10.522 Atomic orbital electron populations 1.23845 0.95103 1.02704 1.01362 1.23466 0.96660 0.98996 0.99639 1.20366 0.87622 0.83156 0.96690 1.86468 1.50862 1.49402 1.50020 1.22920 1.00727 1.01273 0.96303 1.21312 0.98194 0.97092 0.97229 1.22153 0.99458 1.02357 0.94631 1.21746 0.98300 0.97336 0.97605 1.20150 0.89175 0.87985 0.94239 0.93249 1.44114 1.38504 1.29396 1.21007 1.20727 0.96249 0.91610 0.87181 1.20829 1.12075 1.03808 1.00764 0.84012 1.25613 1.02206 0.98562 0.99693 1.70448 1.43126 1.16598 1.29635 0.85473 0.78002 0.77930 0.81075 1.18021 1.22847 1.22775 0.86458 0.88066 0.89636 0.77005 0.87634 0.92335 0.92192 0.91384 0.92648 0.89360 0.91527 0.94114 0.97118 0.96796 0.96453 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.56 13.93 67.78 0.94 -4.61 16 2 C -0.17 -6.05 8.39 25.65 0.22 -5.84 16 3 C 0.16 5.78 0.74 -11.54 -0.01 5.77 16 4 O -0.56 -16.72 10.59 -148.98 -1.58 -18.30 16 5 C -0.18 -6.14 4.52 30.59 0.14 -6.00 16 6 C -0.10 -3.24 5.44 30.60 0.17 -3.07 16 7 C -0.15 -5.38 5.55 30.59 0.17 -5.21 16 8 C -0.11 -4.13 5.48 30.59 0.17 -3.96 16 9 C 0.19 7.80 2.47 44.99 0.11 7.91 16 10 H 0.05 2.05 7.55 -2.39 -0.02 2.03 16 11 N -0.61 -28.94 2.40 -702.81 -1.69 -30.63 16 12 C 0.19 9.46 9.01 127.77 1.15 10.61 16 13 C -0.25 -12.28 5.56 84.03 0.47 -11.82 16 14 H 0.14 6.55 2.29 -2.91 -0.01 6.54 16 15 C -0.07 -3.68 5.44 84.86 0.46 -3.22 16 16 N -0.95 -55.08 9.48 21.65 0.21 -54.88 16 17 Si 0.95 43.72 29.56 68.60 2.03 45.74 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 21 H 0.12 2.85 6.41 -2.91 -0.02 2.83 16 22 H 0.10 2.65 8.06 -2.91 -0.02 2.62 16 23 H 0.09 3.67 8.00 -2.91 -0.02 3.65 16 24 H 0.38 8.41 8.05 -74.06 -0.60 7.81 16 25 H 0.11 4.44 4.05 -2.38 -0.01 4.43 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.98 7.68 -2.38 -0.02 1.96 16 29 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.09 3.77 4.26 -2.39 -0.01 3.76 16 31 H 0.07 2.28 7.68 -2.38 -0.02 2.27 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.01 0.47 7.55 -2.39 -0.02 0.45 16 34 H 0.01 0.75 7.03 -2.39 -0.02 0.74 16 35 H 0.02 0.95 7.07 -2.39 -0.02 0.93 16 36 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -58.30 266.46 3.43 -54.88 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.48 Total: 22.62 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.98 Total: -19.43 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.48 Total: -85.51 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.58 Total: -18.30 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -58.30 3.43 -54.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250402491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.420 kcal (2) G-P(sol) polarization free energy of solvation -58.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds