Wall clock time and date at job start Mon Mar 30 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47504 * 2 1 4 4 C 1.50705 * 109.47075 * 239.99808 * 2 1 3 5 5 H 1.07998 * 120.00458 * 240.00119 * 4 2 1 6 6 C 1.37877 * 119.99662 * 60.00570 * 4 2 1 7 7 N 1.31519 * 120.00400 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46608 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46746 * 119.99726 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00106 * 8 6 4 12 12 N 1.46898 * 109.47047 * 120.00447 * 2 1 3 13 13 C 1.46902 * 111.00283 * 176.04699 * 12 2 1 14 14 C 1.46906 * 110.99888 * 299.99661 * 12 2 1 15 15 H 1.08998 * 109.62120 * 54.62156 * 14 12 2 16 16 C 1.53227 * 109.62477 * 174.99902 * 14 12 2 17 17 C 1.52964 * 109.40389 * 174.34253 * 16 14 12 18 18 C 1.52960 * 109.81637 * 296.40488 * 17 16 14 19 19 C 1.53231 * 109.40550 * 63.59680 * 18 17 16 20 20 C 1.51267 * 109.62515 * 294.04448 * 14 12 2 21 21 O 1.20762 * 120.85009 * 8.91771 * 20 14 12 22 22 H 1.09002 * 109.47035 * 59.99514 * 1 2 3 23 23 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47034 * 300.00201 * 1 2 3 25 25 H 0.96997 * 120.00478 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47457 * 183.95363 * 13 12 2 27 27 H 1.09001 * 109.46615 * 303.95014 * 13 12 2 28 28 H 1.08990 * 109.47358 * 63.94680 * 13 12 2 29 29 H 1.08998 * 109.48474 * 294.32273 * 16 14 12 30 30 H 1.09002 * 109.48680 * 54.36588 * 16 14 12 31 31 H 1.08997 * 109.41266 * 56.50715 * 17 16 14 32 32 H 1.08994 * 109.41588 * 176.29526 * 17 16 14 33 33 H 1.08998 * 109.48269 * 183.57772 * 18 17 16 34 34 H 1.09004 * 109.48079 * 303.61852 * 18 17 16 35 35 H 1.08996 * 109.62733 * 65.08571 * 19 18 17 36 36 H 1.09001 * 109.62449 * 185.47119 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5864 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0265 2.4211 15 1 0.4623 0.0599 2.3953 16 6 1.9711 -0.8421 3.6475 17 6 1.6031 -0.0755 4.9190 18 6 2.3897 1.2349 4.9806 19 6 1.9828 2.1286 3.8043 20 6 2.1694 1.3493 2.5212 21 8 2.7982 1.8135 1.6006 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1610 -3.4844 26 1 3.8163 -1.3723 2.0500 27 1 3.8068 -1.2916 0.2719 28 1 3.9192 0.2041 1.2300 29 1 1.4562 -1.8027 3.6403 30 1 3.0484 -1.0066 3.6213 31 1 0.5352 0.1429 4.9140 32 1 1.8433 -0.6837 5.7910 33 1 2.1714 1.7462 5.9181 34 1 3.4570 1.0212 4.9226 35 1 0.9370 2.4173 3.9084 36 1 2.6091 3.0206 3.7885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251484453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:11 Heat of formation + Delta-G solvation = -33.096051 kcal Electronic energy + Delta-G solvation = -16680.574016 eV Core-core repulsion = 14164.881135 eV Total energy + Delta-G solvation = -2515.692881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08201 -36.26062 -35.74836 -32.70551 -30.18266 -28.89152 -28.18367 -25.13861 -24.07951 -21.99849 -21.54062 -19.72333 -18.41061 -16.35051 -15.61100 -15.39570 -14.93538 -14.45891 -14.34497 -13.95145 -13.42356 -12.98749 -12.82527 -12.38028 -12.08446 -11.70434 -11.46254 -11.21918 -11.06681 -10.94095 -10.85636 -10.61845 -10.43485 -10.27173 -9.95405 -9.90945 -9.72185 -9.34777 -8.76143 -8.33122 -6.86554 -5.91446 -3.94306 2.45125 3.35128 3.42255 3.46818 4.46356 4.49286 4.80082 4.86625 4.95093 5.18981 5.33227 5.41403 5.46466 5.61730 5.70540 5.86197 5.95619 5.98430 6.08884 6.11230 6.26094 6.41487 6.45103 6.64329 6.84886 6.94490 7.14578 7.22391 7.59397 7.82132 7.90494 8.07222 8.28561 8.40596 8.68716 9.11807 9.68721 11.15805 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047646 B = 0.007863 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.520193 B = 3559.915395 C = 3662.450164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.195 3.805 3 H 0.031 0.969 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.518 5.518 13 C 0.020 3.980 14 C 0.035 3.965 15 H 0.110 0.890 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.110 4.110 19 C -0.175 4.175 20 C 0.323 3.677 21 O -0.432 6.432 22 H 0.085 0.915 23 H 0.033 0.967 24 H 0.002 0.998 25 H 0.258 0.742 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -0.382 14.430 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.090 3.910 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.240 5.240 13 C -0.128 4.128 14 C -0.076 4.076 15 H 0.128 0.872 16 C -0.145 4.145 17 C -0.161 4.161 18 C -0.148 4.148 19 C -0.214 4.214 20 C 0.196 3.804 21 O -0.303 6.303 22 H 0.104 0.896 23 H 0.052 0.948 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.708 -0.519 13.743 13.771 hybrid contribution 0.486 0.475 -0.819 1.064 sum 1.194 -0.044 12.924 12.980 Atomic orbital electron populations 1.21883 0.98301 0.99394 0.99599 1.19529 0.91749 0.94303 0.85430 0.95101 1.21181 1.30613 1.11966 0.89866 0.92012 1.24919 0.95400 0.95126 0.98931 1.69907 1.37250 1.23125 1.23069 0.86488 0.78534 0.79571 0.83077 1.19819 1.21117 1.21219 1.62470 1.09746 1.50411 1.01406 1.22432 0.89012 1.00150 1.01219 1.22491 1.01528 0.90152 0.93389 0.87248 1.21619 1.01973 0.98983 0.91896 1.21583 1.00513 0.96023 0.97998 1.21481 1.00457 0.95785 0.97088 1.22425 1.03660 0.99550 0.95744 1.26158 0.77195 0.90060 0.87031 1.90412 1.31131 1.69717 1.39056 0.89617 0.94789 0.97915 0.93201 0.94080 0.90510 0.94925 0.90412 0.91532 0.91479 0.91496 0.91357 0.91819 0.88973 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.75 37.15 0.33 -3.04 16 2 C 0.20 5.16 1.77 -68.87 -0.12 5.04 16 3 H 0.03 0.93 5.62 -51.93 -0.29 0.64 16 4 C -0.50 -14.23 7.88 -34.44 -0.27 -14.50 16 5 H 0.06 1.76 6.41 -52.49 -0.34 1.42 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -26.58 11.32 55.43 0.63 -25.96 16 8 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.52 -11.48 4.62 -229.21 -1.06 -12.54 16 13 C 0.02 0.42 8.58 60.07 0.52 0.94 16 14 C 0.03 0.63 2.27 -68.47 -0.16 0.47 16 15 H 0.11 1.95 6.04 -51.93 -0.31 1.63 16 16 C -0.11 -1.46 5.17 -26.63 -0.14 -1.60 16 17 C -0.12 -1.29 5.81 -26.77 -0.16 -1.44 16 18 C -0.11 -1.16 5.94 -26.63 -0.16 -1.32 16 19 C -0.17 -2.30 6.17 -27.48 -0.17 -2.47 16 20 C 0.32 5.89 5.90 -28.48 -0.17 5.72 16 21 O -0.43 -9.89 12.63 6.00 0.08 -9.81 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.00 0.04 6.29 -51.93 -0.33 -0.28 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.04 0.73 6.22 -51.93 -0.32 0.41 16 27 H 0.08 1.75 6.10 -51.93 -0.32 1.43 16 28 H 0.03 0.73 5.55 -51.93 -0.29 0.44 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -31.61 270.88 -7.23 -38.85 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.35 Total: -1.04 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.59 Total: -10.67 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.43 Total: -38.49 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.61 -7.23 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251484453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.751 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds