Wall clock time and date at job start Mon Mar 30 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47504 * 2 1 4 4 C 1.50705 * 109.47075 * 239.99808 * 2 1 3 5 5 H 1.07998 * 120.00458 * 240.00119 * 4 2 1 6 6 C 1.37877 * 119.99662 * 60.00570 * 4 2 1 7 7 N 1.31519 * 120.00400 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46608 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46746 * 119.99726 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00106 * 8 6 4 12 12 N 1.46898 * 109.47047 * 120.00447 * 2 1 3 13 13 C 1.46902 * 111.00283 * 176.04699 * 12 2 1 14 14 C 1.46906 * 110.99888 * 299.99661 * 12 2 1 15 15 H 1.08998 * 109.62120 * 54.62156 * 14 12 2 16 16 C 1.53227 * 109.62477 * 174.99902 * 14 12 2 17 17 C 1.52964 * 109.40389 * 174.34253 * 16 14 12 18 18 C 1.52960 * 109.81637 * 296.40488 * 17 16 14 19 19 C 1.53231 * 109.40550 * 63.59680 * 18 17 16 20 20 C 1.51267 * 109.62515 * 294.04448 * 14 12 2 21 21 O 1.20762 * 120.85009 * 8.91771 * 20 14 12 22 22 H 1.09002 * 109.47035 * 59.99514 * 1 2 3 23 23 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47034 * 300.00201 * 1 2 3 25 25 H 0.96997 * 120.00478 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47457 * 183.95363 * 13 12 2 27 27 H 1.09001 * 109.46615 * 303.95014 * 13 12 2 28 28 H 1.08990 * 109.47358 * 63.94680 * 13 12 2 29 29 H 1.08998 * 109.48474 * 294.32273 * 16 14 12 30 30 H 1.09002 * 109.48680 * 54.36588 * 16 14 12 31 31 H 1.08997 * 109.41266 * 56.50715 * 17 16 14 32 32 H 1.08994 * 109.41588 * 176.29526 * 17 16 14 33 33 H 1.08998 * 109.48269 * 183.57772 * 18 17 16 34 34 H 1.09004 * 109.48079 * 303.61852 * 18 17 16 35 35 H 1.08996 * 109.62733 * 65.08571 * 19 18 17 36 36 H 1.09001 * 109.62449 * 185.47119 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5864 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0265 2.4211 15 1 0.4623 0.0599 2.3953 16 6 1.9711 -0.8421 3.6475 17 6 1.6031 -0.0755 4.9190 18 6 2.3897 1.2349 4.9806 19 6 1.9828 2.1286 3.8043 20 6 2.1694 1.3493 2.5212 21 8 2.7982 1.8135 1.6006 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1610 -3.4844 26 1 3.8163 -1.3723 2.0500 27 1 3.8068 -1.2916 0.2719 28 1 3.9192 0.2041 1.2300 29 1 1.4562 -1.8027 3.6403 30 1 3.0484 -1.0066 3.6213 31 1 0.5352 0.1429 4.9140 32 1 1.8433 -0.6837 5.7910 33 1 2.1714 1.7462 5.9181 34 1 3.4570 1.0212 4.9226 35 1 0.9370 2.4173 3.9084 36 1 2.6091 3.0206 3.7885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251484453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:11 Heat of formation + Delta-G solvation = -54.567724 kcal Electronic energy + Delta-G solvation = -16681.505098 eV Core-core repulsion = 14164.881135 eV Total energy + Delta-G solvation = -2516.623962 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.54578 -37.87310 -37.07961 -34.69414 -31.71956 -30.55474 -29.54909 -27.13915 -25.78528 -23.39815 -22.75317 -21.38888 -19.77468 -18.43007 -17.12894 -16.92240 -16.68298 -15.94815 -15.65766 -15.54648 -14.94852 -14.60742 -14.08349 -13.75959 -13.67106 -13.41844 -13.00228 -12.90503 -12.77206 -12.64153 -12.28212 -12.14953 -12.00625 -11.82406 -11.79548 -11.46127 -11.24491 -10.86937 -10.75143 -10.50150 -8.62442 -8.10441 -6.21162 1.04448 1.38377 1.38790 1.51501 2.41100 3.16696 3.19164 3.34552 3.88495 3.98727 4.13108 4.15122 4.34377 4.45175 4.58443 4.62664 4.78644 4.87175 4.93507 4.96069 5.04914 5.07311 5.12769 5.17647 5.25620 5.28929 5.39278 5.50315 5.56489 5.72724 5.85266 6.26684 6.35423 6.57320 6.81250 6.95798 7.46210 8.95949 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047646 B = 0.007863 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.520193 B = 3559.915395 C = 3662.450164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.200 3.800 3 H -0.009 1.009 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.524 5.524 13 C 0.028 3.972 14 C 0.025 3.975 15 H 0.111 0.889 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.167 4.167 20 C 0.318 3.682 21 O -0.490 6.490 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.014 0.986 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -1.226 16.726 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.009 0.991 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.210 1.210 12 N -0.247 5.247 13 C -0.120 4.120 14 C -0.085 4.085 15 H 0.129 0.871 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.143 4.143 19 C -0.206 4.206 20 C 0.195 3.805 21 O -0.366 6.366 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.443 -1.376 16.082 16.147 hybrid contribution 0.557 0.756 -1.464 1.740 sum 1.001 -0.620 14.618 14.665 Atomic orbital electron populations 1.21677 0.97614 0.99212 0.99434 1.19246 0.92225 0.92264 0.86919 0.99134 1.21509 1.30689 1.11969 0.91333 0.92578 1.25751 0.95603 0.95875 1.02013 1.70047 1.38186 1.24373 1.23751 0.85461 0.78181 0.78505 0.79202 1.19130 1.20188 1.20986 1.62363 1.10017 1.50596 1.01711 1.22343 0.88691 0.99341 1.01625 1.22752 1.01488 0.91041 0.93200 0.87102 1.21632 1.01692 0.99054 0.91355 1.21589 1.01237 0.95764 0.96846 1.21531 1.00245 0.95548 0.96961 1.22427 1.05073 0.99367 0.93725 1.26762 0.75322 0.90348 0.88060 1.90411 1.33900 1.70819 1.41477 0.92476 0.94729 0.95364 0.93135 0.90401 0.92878 0.96783 0.89765 0.91930 0.90220 0.88593 0.87972 0.92222 0.86798 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.75 71.98 0.63 -5.58 16 2 C 0.20 10.90 1.77 44.17 0.08 10.98 16 3 H -0.01 -0.55 5.62 -2.39 -0.01 -0.57 16 4 C -0.52 -30.40 7.88 25.60 0.20 -30.19 16 5 H 0.06 3.28 6.41 -2.91 -0.02 3.26 16 6 C 0.01 0.31 5.30 84.65 0.45 0.76 16 7 N -0.92 -56.50 11.32 21.45 0.24 -56.26 16 8 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 N -0.52 -23.43 4.62 -879.08 -4.06 -27.49 16 13 C 0.03 1.21 8.58 127.69 1.10 2.31 16 14 C 0.03 0.87 2.27 44.42 0.10 0.97 16 15 H 0.11 3.79 6.04 -2.39 -0.01 3.77 16 16 C -0.10 -2.43 5.17 30.66 0.16 -2.27 16 17 C -0.12 -1.89 5.81 30.57 0.18 -1.71 16 18 C -0.11 -1.78 5.94 30.66 0.18 -1.60 16 19 C -0.17 -4.00 6.17 30.11 0.19 -3.82 16 20 C 0.32 11.50 5.90 29.46 0.17 11.67 16 21 O -0.49 -23.36 12.63 -1.46 -0.02 -23.38 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 23 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.03 1.24 6.29 -2.39 -0.02 1.23 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.08 2.71 6.22 -2.38 -0.01 2.69 16 27 H 0.05 2.49 6.10 -2.39 -0.01 2.47 16 28 H 0.01 0.65 5.55 -2.39 -0.01 0.63 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.58 6.17 -2.39 -0.01 1.56 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.92 270.88 2.69 -69.23 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.06 Total: 8.18 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.43 Total: -18.49 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.81 Total: -83.75 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.02 Total: -23.38 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.92 2.69 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251484453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.666 kcal (2) G-P(sol) polarization free energy of solvation -71.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds