Wall clock time and date at job start Mon Mar 30 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47379 * 2 1 4 4 C 1.50702 * 109.47286 * 120.00009 * 2 1 3 5 5 H 1.08003 * 119.99894 * 120.00337 * 4 2 1 6 6 C 1.37873 * 120.00133 * 299.99818 * 4 2 1 7 7 N 1.31513 * 119.99956 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47266 * 90.00162 * 8 6 4 10 10 H 1.48506 * 109.47206 * 210.00276 * 8 6 4 11 11 H 1.48502 * 109.47277 * 330.00169 * 8 6 4 12 12 N 1.46901 * 109.47259 * 240.00195 * 2 1 3 13 13 C 1.46902 * 111.00009 * 297.41541 * 12 2 1 14 14 C 1.46894 * 111.00141 * 173.45912 * 12 2 1 15 15 H 1.09002 * 109.49572 * 61.62158 * 14 12 2 16 16 C 1.52960 * 109.48168 * 181.65121 * 14 12 2 17 17 C 1.52963 * 109.81877 * 183.57832 * 16 14 12 18 18 C 1.53662 * 109.32351 * 296.27494 * 17 16 14 19 19 C 1.51268 * 108.30979 * 54.85718 * 18 17 16 20 20 O 1.20766 * 120.84682 * 128.62094 * 19 18 17 21 21 C 1.51264 * 118.30540 * 308.34504 * 19 18 17 22 22 H 1.09000 * 109.46927 * 186.26113 * 1 2 3 23 23 H 1.08998 * 109.46851 * 306.25355 * 1 2 3 24 24 H 1.08994 * 109.47234 * 66.25847 * 1 2 3 25 25 H 0.97006 * 120.00401 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46635 * 296.04471 * 13 12 2 27 27 H 1.09002 * 109.47210 * 56.04127 * 13 12 2 28 28 H 1.08990 * 109.47419 * 176.04351 * 13 12 2 29 29 H 1.08999 * 109.41225 * 303.68331 * 16 14 12 30 30 H 1.09003 * 109.41315 * 63.47326 * 16 14 12 31 31 H 1.09004 * 109.48041 * 56.37867 * 17 16 14 32 32 H 1.08999 * 109.48459 * 176.42078 * 17 16 14 33 33 H 1.09003 * 109.78253 * 295.18386 * 18 17 16 34 34 H 1.08999 * 109.68902 * 174.47613 * 18 17 16 35 35 H 1.08994 * 109.62705 * 171.31781 * 21 19 18 36 36 H 1.09001 * 109.62299 * 291.88734 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5663 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 1.5998 -2.1002 -1.2029 14 6 3.4797 -0.5782 -1.3141 15 1 3.9503 -1.0495 -0.4512 16 6 3.9470 -1.2744 -2.5934 17 6 5.4740 -1.2377 -2.6757 18 6 5.9424 0.2218 -2.7830 19 6 5.3627 0.9938 -1.6184 20 8 6.0697 1.6705 -0.9108 21 6 3.8741 0.9015 -1.3666 22 1 -0.3633 -1.0215 0.1121 23 1 -0.3633 0.6077 0.8287 24 1 -0.3633 0.4137 -0.9406 25 1 0.7082 1.1609 3.4845 26 1 2.0581 -2.6180 -0.3604 27 1 0.5146 -2.1559 -1.1169 28 1 1.9152 -2.5711 -2.1339 29 1 3.6094 -2.3108 -2.5859 30 1 3.5251 -0.7633 -3.4588 31 1 5.8973 -1.6933 -1.7805 32 1 5.8040 -1.7898 -3.5557 33 1 5.5912 0.6541 -3.7199 34 1 7.0310 0.2620 -2.7434 35 1 3.6332 1.3786 -0.4167 36 1 3.3348 1.3956 -2.1748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251514513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:16 Heat of formation + Delta-G solvation = -43.946345 kcal Electronic energy + Delta-G solvation = -16512.312250 eV Core-core repulsion = 13996.148865 eV Total energy + Delta-G solvation = -2516.163385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64422 -37.55979 -35.01079 -32.52414 -30.22521 -29.28766 -27.53790 -25.30306 -24.64793 -22.51166 -20.58606 -19.26268 -18.81635 -16.24490 -15.98315 -15.07261 -14.95192 -14.38724 -14.28058 -13.97724 -13.55499 -13.04104 -12.76912 -12.59069 -12.04687 -11.79622 -11.50475 -11.24018 -11.03192 -10.89910 -10.83764 -10.71356 -10.38086 -10.26836 -10.07757 -9.80573 -9.72567 -9.19890 -8.99401 -8.38408 -7.18646 -6.00059 -4.11919 2.28931 3.27498 3.34582 3.36532 4.39506 4.40642 4.81303 5.04904 5.08191 5.21589 5.27352 5.49897 5.64541 5.70943 5.83296 5.91814 6.06932 6.10309 6.21821 6.27200 6.36155 6.49718 6.68948 6.76214 6.78527 6.95618 7.03802 7.19622 7.54507 7.71140 7.83949 7.94098 8.13791 8.28452 8.41407 8.96587 9.55792 11.00924 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.009559 C = 0.008462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.110601 B = 2928.427202 C = 3308.116708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.201 3.799 3 H 0.044 0.956 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.536 5.536 13 C 0.031 3.969 14 C 0.100 3.900 15 H 0.049 0.951 16 C -0.122 4.122 17 C -0.111 4.111 18 C -0.169 4.169 19 C 0.364 3.636 20 O -0.466 6.466 21 C -0.160 4.160 22 H 0.027 0.973 23 H 0.079 0.921 24 H 0.015 0.985 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -3.604 -10.471 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 H 0.061 0.939 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.260 5.260 13 C -0.117 4.117 14 C -0.009 4.009 15 H 0.067 0.933 16 C -0.160 4.160 17 C -0.149 4.149 18 C -0.207 4.207 19 C 0.239 3.761 20 O -0.340 6.340 21 C -0.197 4.197 22 H 0.046 0.954 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.953 -2.893 -10.356 11.838 hybrid contribution 0.585 -0.924 1.688 2.011 sum 5.538 -3.817 -8.668 10.971 Atomic orbital electron populations 1.21770 0.97715 0.99871 0.99246 1.19368 0.92342 0.94455 0.84344 0.93855 1.21662 1.31921 1.12936 0.91711 0.92677 1.24888 0.94779 0.94825 0.98851 1.69884 1.36304 1.22710 1.23473 0.86701 0.78757 0.80082 0.83125 1.20660 1.21152 1.20077 1.62598 1.08370 1.12921 1.42157 1.22228 1.00852 0.89986 0.98636 1.21282 0.90747 0.92791 0.96073 0.93322 1.21764 0.93918 1.01408 0.98903 1.21560 0.96711 0.94308 1.02329 1.22404 1.01764 0.97318 0.99236 1.25019 0.91648 0.76517 0.82867 1.90378 1.63794 1.34121 1.45671 1.22362 0.92741 0.99339 1.05294 0.95352 0.90188 0.96630 0.92897 0.95241 0.92012 0.93710 0.91258 0.91147 0.91684 0.91140 0.88613 0.90047 0.88199 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.54 37.16 0.32 -2.72 16 2 C 0.20 4.85 2.08 -68.86 -0.14 4.70 16 3 H 0.04 1.14 6.06 -51.93 -0.31 0.83 16 4 C -0.54 -14.37 7.12 -34.44 -0.25 -14.61 16 5 H 0.06 1.47 5.82 -52.48 -0.31 1.17 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 7 N -0.89 -24.96 11.39 55.43 0.63 -24.33 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.54 -10.81 4.61 -228.18 -1.05 -11.86 16 13 C 0.03 0.59 8.49 60.07 0.51 1.10 16 14 C 0.10 1.81 1.70 -67.62 -0.12 1.69 16 15 H 0.05 1.01 6.94 -51.93 -0.36 0.65 16 16 C -0.12 -1.67 4.90 -26.77 -0.13 -1.80 16 17 C -0.11 -1.30 5.95 -26.41 -0.16 -1.46 16 18 C -0.17 -2.06 6.20 -27.26 -0.17 -2.23 16 19 C 0.36 6.05 6.71 -28.48 -0.19 5.86 16 20 O -0.47 -9.41 17.89 5.99 0.11 -9.30 16 21 C -0.16 -2.84 4.99 -27.49 -0.14 -2.98 16 22 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 23 H 0.08 2.09 6.26 -51.93 -0.33 1.76 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.59 6.46 -51.93 -0.34 0.26 16 27 H 0.06 1.17 6.31 -51.93 -0.33 0.84 16 28 H 0.04 0.70 6.18 -51.93 -0.32 0.38 16 29 H 0.07 0.92 6.16 -51.93 -0.32 0.60 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 2.13 6.57 -51.93 -0.34 1.79 16 36 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -29.04 275.50 -7.13 -36.17 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.39 Total: -0.51 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.56 Total: -10.66 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.42 Total: -36.18 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.11 Total: -9.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.04 -7.13 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251514513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.779 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds