Wall clock time and date at job start Mon Mar 30 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46765 * 2 1 4 4 C 1.50694 * 109.47301 * 240.00002 * 2 1 3 5 5 H 1.08003 * 119.99612 * 275.21793 * 4 2 1 6 6 C 1.37870 * 120.00156 * 95.22097 * 4 2 1 7 7 N 1.31516 * 120.00049 * 174.38217 * 6 4 2 8 8 Si 1.86799 * 120.00209 * 354.37961 * 6 4 2 9 9 H 1.48503 * 109.47040 * 93.86308 * 8 6 4 10 10 H 1.48498 * 109.47173 * 213.86456 * 8 6 4 11 11 H 1.48505 * 109.47048 * 333.86625 * 8 6 4 12 12 N 1.46905 * 109.47192 * 119.99369 * 2 1 3 13 13 C 1.44961 * 110.99742 * 166.62350 * 12 2 1 14 14 C 1.52041 * 112.74213 * 171.33657 * 13 12 2 15 15 O 1.42320 * 110.48361 * 311.17882 * 14 13 12 16 16 C 1.42862 * 114.44449 * 59.06839 * 15 14 13 17 17 H 1.08997 * 112.52584 * 67.76808 * 16 15 14 18 18 C 1.55405 * 107.54407 * 191.93218 * 16 15 14 19 19 C 1.54457 * 103.81951 * 75.83746 * 18 16 15 20 20 C 1.54215 * 106.35023 * 24.78880 * 19 18 16 21 21 C 1.44437 * 111.00289 * 298.48245 * 12 2 1 22 22 H 1.08994 * 109.28322 * 67.75720 * 21 12 2 23 23 H 1.09004 * 109.47047 * 186.20264 * 1 2 3 24 24 H 1.09003 * 109.47589 * 306.19744 * 1 2 3 25 25 H 1.09000 * 109.47345 * 66.19534 * 1 2 3 26 26 H 0.97001 * 120.00021 * 180.02562 * 7 6 4 27 27 H 1.08993 * 108.83187 * 292.18002 * 13 12 2 28 28 H 1.09000 * 108.82760 * 50.49825 * 13 12 2 29 29 H 1.09000 * 109.30274 * 190.87043 * 14 13 12 30 30 H 1.09000 * 109.30288 * 71.48562 * 14 13 12 31 31 H 1.08995 * 110.56127 * 317.24904 * 18 16 15 32 32 H 1.09004 * 110.55656 * 194.41266 * 18 16 15 33 33 H 1.09000 * 110.07532 * 265.56876 * 19 18 16 34 34 H 1.08998 * 110.07989 * 144.01127 * 19 18 16 35 35 H 1.09003 * 110.11468 * 240.44325 * 20 19 18 36 36 H 1.08997 * 110.17219 * 118.81702 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1321 -1.7858 -1.2301 6 6 2.3646 0.0125 -2.3564 7 7 2.9063 -0.5932 -3.3905 8 14 2.0452 1.8521 -2.4134 9 1 3.2677 2.5801 -1.9883 10 1 1.6886 2.2499 -3.7989 11 1 0.9253 2.1886 -1.4980 12 7 2.0196 -0.6924 1.1995 13 6 3.4341 -0.9890 1.0870 14 6 4.0295 -1.5141 2.3837 15 8 3.6589 -0.6799 3.4757 16 6 2.2496 -0.5628 3.6785 17 1 1.7967 -1.4967 4.0113 18 6 2.0160 0.5972 4.6858 19 6 2.2422 1.8705 3.8412 20 6 1.9599 1.4762 2.3773 21 6 1.5860 -0.0170 2.4004 22 1 0.5048 -0.1150 2.4980 23 1 -0.3633 -1.0217 0.1110 24 1 -0.3634 0.6069 0.8293 25 1 -0.3634 0.4148 -0.9402 26 1 3.1404 -0.0845 -4.1826 27 1 3.5759 -1.7366 0.3068 28 1 3.9625 -0.0797 0.8002 29 1 5.1160 -1.5349 2.2989 30 1 3.6657 -2.5257 2.5636 31 1 2.7366 0.5463 5.5020 32 1 0.9969 0.5699 5.0714 33 1 3.2727 2.2103 3.9452 34 1 1.5551 2.6556 4.1565 35 1 2.8513 1.6301 1.7690 36 1 1.1312 2.0641 1.9828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251683485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:39 Heat of formation + Delta-G solvation = -44.131269 kcal Electronic energy + Delta-G solvation = -16967.850763 eV Core-core repulsion = 14451.679359 eV Total energy + Delta-G solvation = -2516.171404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99009 -36.02277 -35.23324 -32.45183 -30.42171 -28.76924 -27.85836 -25.79933 -24.82057 -22.23112 -20.78546 -19.79429 -18.12388 -17.11772 -16.17237 -16.00234 -15.20432 -14.82502 -14.29243 -13.76624 -13.51551 -13.11397 -12.58409 -12.52359 -12.05753 -11.94072 -11.31002 -11.14865 -11.09660 -10.91768 -10.84040 -10.75667 -10.56499 -10.29107 -10.10461 -9.83969 -9.73964 -9.11321 -8.90208 -8.57176 -7.09077 -6.12629 -4.10690 3.23228 3.33125 3.36056 4.09412 4.37153 4.58089 4.88424 5.08079 5.14605 5.26367 5.52687 5.65956 5.71078 5.72483 5.79279 5.91275 5.94966 6.04135 6.11298 6.15727 6.30094 6.33702 6.43610 6.54465 6.58756 6.68065 6.81680 6.83363 7.01022 7.35565 7.60674 7.65379 8.03086 8.30174 8.68225 8.96644 9.51898 11.00141 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.010317 C = 0.009246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.344672 B = 2713.227019 C = 3027.685329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H 0.007 0.993 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.868 3.132 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.548 5.548 13 C 0.057 3.943 14 C 0.060 3.940 15 O -0.382 6.382 16 C 0.087 3.913 17 H 0.072 0.928 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.152 4.152 21 C 0.072 3.928 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 2.477 13.139 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 H 0.024 0.976 4 C -0.545 4.545 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.695 3.305 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.273 5.273 13 C -0.071 4.071 14 C -0.017 4.017 15 O -0.300 6.300 16 C 0.029 3.971 17 H 0.090 0.910 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.192 4.192 21 C -0.038 4.038 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.406 2.186 13.066 13.322 hybrid contribution 0.070 1.676 -0.541 1.763 sum -1.336 3.863 12.526 13.176 Atomic orbital electron populations 1.21981 0.98134 1.00274 0.98747 1.19605 0.91849 0.92344 0.87747 0.97558 1.20921 1.43090 0.95792 0.94659 0.90192 1.24968 0.94264 0.97892 0.95783 1.69900 1.41650 1.36289 1.05534 0.86993 0.79338 0.86647 0.77493 1.20560 1.21281 1.18621 1.58842 1.14980 1.51473 1.01962 1.21615 0.87747 1.01053 0.96696 1.22465 0.99511 0.93360 0.86344 1.87723 1.22157 1.69703 1.50467 1.23116 0.82024 0.97190 0.94745 0.90995 1.22525 1.01335 0.94048 0.97490 1.22088 1.01164 0.96916 0.95149 1.22765 1.01509 0.98607 0.96287 1.22158 0.99819 0.90949 0.90905 0.90097 0.92922 0.96066 0.93331 0.92632 0.88652 0.95690 0.89178 0.93508 0.90970 0.90589 0.91986 0.92410 0.91799 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.46 37.16 0.31 -2.54 16 2 C 0.19 4.46 1.33 -68.87 -0.09 4.37 16 3 H 0.01 0.17 4.11 -51.93 -0.21 -0.05 16 4 C -0.51 -13.82 7.40 -34.45 -0.25 -14.08 16 5 H 0.08 2.40 7.61 -52.48 -0.40 2.00 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 8 Si 0.87 21.37 26.53 -169.99 -4.51 16.86 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.17 6.22 56.52 0.35 -5.82 16 12 N -0.55 -11.48 4.28 -222.98 -0.95 -12.43 16 13 C 0.06 1.16 4.78 -5.35 -0.03 1.14 16 14 C 0.06 1.01 6.95 36.67 0.26 1.27 16 15 O -0.38 -6.55 10.04 -35.23 -0.35 -6.91 16 16 C 0.09 1.36 3.99 -24.93 -0.10 1.26 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -1.50 6.46 -24.69 -0.16 -1.66 16 19 C -0.12 -1.62 6.69 -25.33 -0.17 -1.79 16 20 C -0.15 -2.63 4.89 -25.60 -0.13 -2.75 16 21 C 0.07 1.27 2.18 -68.01 -0.15 1.13 16 22 H 0.08 1.39 6.85 -51.93 -0.36 1.04 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.02 0.39 6.90 -51.93 -0.36 0.03 16 25 H 0.05 1.06 7.29 -51.93 -0.38 0.69 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.10 2.13 6.80 -51.93 -0.35 1.78 16 28 H 0.02 0.55 7.61 -51.93 -0.40 0.16 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.26 6.90 -51.93 -0.36 0.90 16 36 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -29.25 269.44 -7.38 -36.64 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.80 Total: -0.48 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.60 Total: -11.68 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.18 Total: -38.48 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.35 Total: -6.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.51 Total: 16.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.25 -7.38 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251683485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.495 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds