Wall clock time and date at job start Mon Mar 30 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46765 * 2 1 4 4 C 1.50694 * 109.47301 * 240.00002 * 2 1 3 5 5 H 1.08003 * 119.99612 * 275.21793 * 4 2 1 6 6 C 1.37870 * 120.00156 * 95.22097 * 4 2 1 7 7 N 1.31516 * 120.00049 * 174.38217 * 6 4 2 8 8 Si 1.86799 * 120.00209 * 354.37961 * 6 4 2 9 9 H 1.48503 * 109.47040 * 93.86308 * 8 6 4 10 10 H 1.48498 * 109.47173 * 213.86456 * 8 6 4 11 11 H 1.48505 * 109.47048 * 333.86625 * 8 6 4 12 12 N 1.46905 * 109.47192 * 119.99369 * 2 1 3 13 13 C 1.44961 * 110.99742 * 166.62350 * 12 2 1 14 14 C 1.52041 * 112.74213 * 171.33657 * 13 12 2 15 15 O 1.42320 * 110.48361 * 311.17882 * 14 13 12 16 16 C 1.42862 * 114.44449 * 59.06839 * 15 14 13 17 17 H 1.08997 * 112.52584 * 67.76808 * 16 15 14 18 18 C 1.55405 * 107.54407 * 191.93218 * 16 15 14 19 19 C 1.54457 * 103.81951 * 75.83746 * 18 16 15 20 20 C 1.54215 * 106.35023 * 24.78880 * 19 18 16 21 21 C 1.44437 * 111.00289 * 298.48245 * 12 2 1 22 22 H 1.08994 * 109.28322 * 67.75720 * 21 12 2 23 23 H 1.09004 * 109.47047 * 186.20264 * 1 2 3 24 24 H 1.09003 * 109.47589 * 306.19744 * 1 2 3 25 25 H 1.09000 * 109.47345 * 66.19534 * 1 2 3 26 26 H 0.97001 * 120.00021 * 180.02562 * 7 6 4 27 27 H 1.08993 * 108.83187 * 292.18002 * 13 12 2 28 28 H 1.09000 * 108.82760 * 50.49825 * 13 12 2 29 29 H 1.09000 * 109.30274 * 190.87043 * 14 13 12 30 30 H 1.09000 * 109.30288 * 71.48562 * 14 13 12 31 31 H 1.08995 * 110.56127 * 317.24904 * 18 16 15 32 32 H 1.09004 * 110.55656 * 194.41266 * 18 16 15 33 33 H 1.09000 * 110.07532 * 265.56876 * 19 18 16 34 34 H 1.08998 * 110.07989 * 144.01127 * 19 18 16 35 35 H 1.09003 * 110.11468 * 240.44325 * 20 19 18 36 36 H 1.08997 * 110.17219 * 118.81702 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1321 -1.7858 -1.2301 6 6 2.3646 0.0125 -2.3564 7 7 2.9063 -0.5932 -3.3905 8 14 2.0452 1.8521 -2.4134 9 1 3.2677 2.5801 -1.9883 10 1 1.6886 2.2499 -3.7989 11 1 0.9253 2.1886 -1.4980 12 7 2.0196 -0.6924 1.1995 13 6 3.4341 -0.9890 1.0870 14 6 4.0295 -1.5141 2.3837 15 8 3.6589 -0.6799 3.4757 16 6 2.2496 -0.5628 3.6785 17 1 1.7967 -1.4967 4.0113 18 6 2.0160 0.5972 4.6858 19 6 2.2422 1.8705 3.8412 20 6 1.9599 1.4762 2.3773 21 6 1.5860 -0.0170 2.4004 22 1 0.5048 -0.1150 2.4980 23 1 -0.3633 -1.0217 0.1110 24 1 -0.3634 0.6069 0.8293 25 1 -0.3634 0.4148 -0.9402 26 1 3.1404 -0.0845 -4.1826 27 1 3.5759 -1.7366 0.3068 28 1 3.9625 -0.0797 0.8002 29 1 5.1160 -1.5349 2.2989 30 1 3.6657 -2.5257 2.5636 31 1 2.7366 0.5463 5.5020 32 1 0.9969 0.5699 5.0714 33 1 3.2727 2.2103 3.9452 34 1 1.5551 2.6556 4.1565 35 1 2.8513 1.6301 1.7690 36 1 1.1312 2.0641 1.9828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251683485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:38 Heat of formation + Delta-G solvation = -64.511559 kcal Electronic energy + Delta-G solvation = -16968.734519 eV Core-core repulsion = 14451.679359 eV Total energy + Delta-G solvation = -2517.055159 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40004 -37.63037 -36.54270 -34.51029 -32.18874 -30.21076 -29.13328 -27.44633 -26.60153 -23.70866 -22.36790 -21.15298 -19.67894 -19.09330 -17.56277 -17.53898 -16.61236 -16.47421 -15.94480 -15.24824 -15.07425 -14.69246 -14.54533 -14.05338 -13.59066 -13.36141 -13.01377 -12.82074 -12.66285 -12.42828 -12.39415 -12.12474 -12.02985 -11.90803 -11.77822 -11.40141 -11.19891 -11.07047 -10.73314 -10.33145 -8.78646 -8.32542 -6.34035 1.25957 1.29681 1.40064 2.28884 2.78573 2.97350 3.20639 3.66120 3.84934 3.93529 4.17072 4.29267 4.35353 4.43213 4.51169 4.57023 4.67178 4.70135 4.78943 4.82130 4.88287 4.94419 4.99610 5.04401 5.08802 5.19365 5.22970 5.32948 5.42771 5.51326 5.67314 6.08967 6.33639 6.44965 6.70997 6.89357 7.32012 8.83992 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.010317 C = 0.009246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.344672 B = 2713.227019 C = 3027.685329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.193 3.807 3 H -0.001 1.001 4 C -0.501 4.501 5 H 0.038 0.962 6 C 0.017 3.983 7 N -0.943 5.943 8 Si 0.928 3.072 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.241 1.241 12 N -0.555 5.555 13 C 0.063 3.937 14 C 0.069 3.931 15 O -0.388 6.388 16 C 0.081 3.919 17 H 0.087 0.913 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.152 4.152 21 C 0.063 3.937 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.063 0.937 28 H -0.002 1.002 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 3.810 15.891 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.056 0.944 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.752 3.248 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.164 1.164 12 N -0.279 5.279 13 C -0.065 4.065 14 C -0.008 4.008 15 O -0.306 6.306 16 C 0.024 3.976 17 H 0.105 0.895 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.192 4.192 21 C -0.047 4.047 22 H 0.111 0.889 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.016 0.984 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.617 3.519 15.851 16.447 hybrid contribution 0.455 1.170 -1.378 1.864 sum -2.161 4.689 14.474 15.367 Atomic orbital electron populations 1.21864 0.96149 1.00887 0.99647 1.19482 0.93265 0.91416 0.87231 0.98336 1.21086 1.42326 0.94079 0.96504 0.94391 1.25744 0.94298 1.02560 0.95436 1.70039 1.43645 1.38220 1.06439 0.86027 0.79743 0.81004 0.77990 1.20580 1.20814 1.16423 1.58728 1.14872 1.51830 1.02497 1.21513 0.87845 0.98956 0.98228 1.22383 1.00402 0.93603 0.84364 1.87731 1.23381 1.69716 1.49819 1.23385 0.80967 0.99039 0.94241 0.89486 1.22562 1.03472 0.91580 0.96688 1.22075 1.01532 0.98338 0.92888 1.22727 0.99958 0.98261 0.98244 1.22379 1.00690 0.91328 0.90259 0.88884 0.92988 0.92947 0.94085 0.92571 0.91833 0.98407 0.87355 0.92218 0.89716 0.87687 0.92606 0.89901 0.95169 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.46 71.98 0.61 -4.64 16 2 C 0.19 9.02 1.33 44.16 0.06 9.08 16 3 H 0.00 -0.04 4.11 -2.39 -0.01 -0.05 16 4 C -0.50 -28.37 7.40 25.60 0.19 -28.18 16 5 H 0.04 2.41 7.61 -2.91 -0.02 2.39 16 6 C 0.02 1.01 5.47 84.65 0.46 1.48 16 7 N -0.94 -58.66 13.96 21.44 0.30 -58.36 16 8 Si 0.93 44.53 26.53 68.60 1.82 46.35 16 9 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.24 -10.65 6.22 99.48 0.62 -10.03 16 12 N -0.55 -23.09 4.28 -859.37 -3.68 -26.77 16 13 C 0.06 2.64 4.78 86.35 0.41 3.06 16 14 C 0.07 2.27 6.95 71.67 0.50 2.77 16 15 O -0.39 -12.40 10.04 -148.98 -1.50 -13.90 16 16 C 0.08 2.28 3.99 31.76 0.13 2.40 16 17 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.11 -2.24 6.46 31.92 0.21 -2.04 16 19 C -0.11 -2.70 6.69 31.50 0.21 -2.49 16 20 C -0.15 -4.94 4.89 31.33 0.15 -4.78 16 21 C 0.06 2.08 2.18 46.04 0.10 2.18 16 22 H 0.09 2.87 6.85 -2.39 -0.02 2.86 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.05 1.82 6.90 -2.39 -0.02 1.80 16 25 H 0.04 1.72 7.29 -2.39 -0.02 1.71 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.06 3.02 6.80 -2.39 -0.02 3.00 16 28 H 0.00 -0.11 7.61 -2.39 -0.02 -0.13 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.16 6.90 -2.39 -0.02 1.15 16 36 H 0.06 1.93 8.08 -2.39 -0.02 1.92 16 Total: -1.00 -65.12 269.44 0.93 -64.20 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.95 Total: 9.64 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 3.03 Total: -21.16 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -3.38 Total: -85.13 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.50 Total: -13.90 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.82 Total: 46.35 kcal Total: -65.12 0.93 -64.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251683485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.316 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds