Wall clock time and date at job start Mon Mar 30 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47279 * 2 1 4 4 C 1.50707 * 109.47518 * 239.99957 * 2 1 3 5 5 H 1.08000 * 119.99548 * 267.88666 * 4 2 1 6 6 C 1.37877 * 119.99787 * 87.88063 * 4 2 1 7 7 N 1.31512 * 120.00234 * 353.54079 * 6 4 2 8 8 Si 1.86799 * 119.99548 * 173.54242 * 6 4 2 9 9 H 1.48491 * 109.47475 * 90.00087 * 8 6 4 10 10 H 1.48498 * 109.47163 * 329.99821 * 8 6 4 11 11 H 1.48501 * 109.46957 * 210.00304 * 8 6 4 12 12 N 1.46906 * 109.47479 * 120.00031 * 2 1 3 13 13 C 1.49620 * 111.00092 * 179.87686 * 12 2 1 14 14 C 1.50361 * 104.82744 * 114.66412 * 13 12 2 15 15 H 1.08998 * 110.05254 * 278.92234 * 14 13 12 16 16 C 1.51022 * 125.48592 * 144.39236 * 14 13 12 17 17 C 1.56398 * 101.59804 * 203.92941 * 16 14 13 18 18 C 1.55939 * 105.79632 * 25.00902 * 17 16 14 19 19 H 1.09002 * 110.59929 * 248.78678 * 18 17 16 20 20 O 1.42898 * 110.49333 * 126.18569 * 18 17 16 21 21 C 1.50301 * 104.16178 * 7.51324 * 18 17 16 22 22 H 1.09000 * 109.99043 * 80.52807 * 21 18 17 23 23 C 1.50103 * 110.99657 * 299.69003 * 12 2 1 24 24 H 1.08994 * 109.47295 * 306.61521 * 1 2 3 25 25 H 1.09001 * 109.47194 * 66.61538 * 1 2 3 26 26 H 1.08999 * 109.46929 * 186.61175 * 1 2 3 27 27 H 0.96996 * 119.99709 * 354.60147 * 7 6 4 28 28 H 1.09004 * 110.36350 * 233.49852 * 13 12 2 29 29 H 1.08997 * 110.36997 * 355.82279 * 13 12 2 30 30 H 1.09000 * 111.00148 * 322.01109 * 16 14 13 31 31 H 1.09000 * 110.99831 * 85.85002 * 16 14 13 32 32 H 1.08996 * 110.18280 * 265.92285 * 17 16 14 33 33 H 1.09003 * 110.24351 * 144.12323 * 17 16 14 34 34 H 0.96702 * 113.99603 * 65.25763 * 20 18 17 35 35 H 1.09005 * 110.85244 * 331.32885 * 23 12 2 36 36 H 1.09007 * 110.85310 * 94.95414 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2449 -1.7687 -1.1940 6 6 2.2206 -0.0094 -2.4027 7 7 1.8432 1.2478 -2.4849 8 14 3.0117 -0.8453 -3.8740 9 1 1.9589 -1.4750 -4.7108 10 1 3.9579 -1.8877 -3.4016 11 1 3.7473 0.1625 -4.6794 12 7 2.0197 -0.6925 1.1995 13 6 3.5154 -0.7150 1.2325 14 6 3.8866 0.1208 2.4259 15 1 3.8503 1.1790 2.1670 16 6 5.0536 -0.1381 3.3489 17 6 4.5865 0.5822 4.6561 18 6 3.0286 0.6079 4.5932 19 1 2.6671 1.6266 4.4526 20 8 2.4705 0.0396 5.7797 21 6 2.6949 -0.2387 3.3970 22 1 2.7390 -1.2946 3.6637 23 6 1.5446 -0.0075 2.4477 24 1 -0.3633 0.6129 0.8248 25 1 -0.3633 0.4079 -0.9433 26 1 -0.3633 -1.0208 0.1183 27 1 1.3623 1.6588 -1.7496 28 1 3.8767 -1.7359 1.3571 29 1 3.9216 -0.2765 0.3210 30 1 5.1881 -1.2065 3.5182 31 1 5.9668 0.3121 2.9597 32 1 4.9785 1.5988 4.6860 33 1 4.9184 0.0257 5.5326 34 1 2.6553 0.5458 6.5826 35 1 1.3944 1.0579 2.2724 36 1 0.6327 -0.4725 2.8224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252866041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:01 Heat of formation + Delta-G solvation = -43.638174 kcal Electronic energy + Delta-G solvation = -16377.239126 eV Core-core repulsion = 13861.089104 eV Total energy + Delta-G solvation = -2516.150021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13650 -36.84409 -34.86792 -32.80448 -30.05413 -29.41197 -26.66173 -25.62088 -24.29065 -22.05644 -20.24321 -19.77092 -19.45398 -17.02998 -16.51771 -15.69548 -15.17476 -14.56447 -13.93180 -13.70281 -13.47535 -13.16799 -12.47904 -12.45706 -12.01213 -11.80231 -11.36856 -11.15170 -11.03586 -10.95578 -10.63236 -10.57043 -10.34111 -10.12547 -10.06524 -10.02753 -9.86591 -9.65833 -8.59337 -8.29821 -7.27955 -6.34650 -4.05636 3.44680 3.47394 3.63782 4.17857 4.28760 4.52467 4.65784 4.92676 5.14980 5.26286 5.34312 5.40923 5.44486 5.52458 5.83738 5.87888 5.96734 6.03211 6.10430 6.20326 6.36481 6.38130 6.48216 6.61683 6.67837 6.76090 6.82235 6.88410 7.08176 7.37103 7.65110 7.80931 8.05908 8.34872 8.62643 8.88901 9.66308 11.02048 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.007458 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.419471 B = 3753.653622 C = 4144.193988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.187 3.813 3 H 0.003 0.997 4 C -0.580 4.580 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 1.068 2.932 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.515 5.515 13 C 0.070 3.930 14 C -0.130 4.130 15 H 0.068 0.932 16 C -0.099 4.099 17 C -0.153 4.153 18 C 0.116 3.884 19 H 0.058 0.942 20 O -0.563 6.563 21 C -0.111 4.111 22 H 0.087 0.913 23 C 0.056 3.944 24 H 0.015 0.985 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.269 0.731 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.371 0.629 35 H 0.037 0.963 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -0.017 12.973 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.080 3.920 3 H 0.020 0.980 4 C -0.619 4.619 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.551 5.551 8 Si 0.897 3.103 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.211 1.211 12 N -0.239 5.239 13 C -0.058 4.058 14 C -0.150 4.150 15 H 0.086 0.914 16 C -0.138 4.138 17 C -0.191 4.191 18 C 0.057 3.943 19 H 0.076 0.924 20 O -0.368 6.368 21 C -0.131 4.131 22 H 0.105 0.895 23 C -0.072 4.072 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.217 0.783 35 H 0.055 0.945 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.768 -0.717 10.931 11.948 hybrid contribution -0.140 1.102 1.975 2.266 sum 4.629 0.385 12.906 13.717 Atomic orbital electron populations 1.21883 0.98573 0.99660 0.98721 1.19638 0.91576 0.92576 0.88161 0.97983 1.21882 1.47656 0.97219 0.95100 0.92534 1.25823 0.96268 0.95686 1.00788 1.70761 1.36577 1.12547 1.35171 0.83560 0.76430 0.75068 0.75256 1.21509 1.21390 1.21076 1.65272 1.06523 1.50772 1.01371 1.21890 0.89395 0.98526 0.95971 1.22526 0.95186 1.01073 0.96167 0.91375 1.21708 0.97364 1.00641 0.94046 1.23673 0.95669 1.00790 0.98944 1.21784 0.91750 0.96055 0.84688 0.92447 1.86611 1.78471 1.54472 1.17253 1.22078 0.97094 1.01204 0.92684 0.89474 1.22297 0.96668 0.97023 0.91189 0.96553 0.93165 0.93575 0.92004 0.91848 0.90633 0.91121 0.91574 0.91539 0.90973 0.78253 0.94454 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.82 37.15 0.33 -2.77 16 2 C 0.19 4.77 1.38 -68.86 -0.10 4.67 16 3 H 0.00 0.07 6.97 -51.93 -0.36 -0.29 16 4 C -0.58 -16.19 7.16 -34.44 -0.25 -16.43 16 5 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 6 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 7 N -0.91 -27.33 13.56 55.43 0.75 -26.58 16 8 Si 1.07 25.18 29.91 -169.99 -5.08 20.09 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.51 -11.53 5.13 -225.71 -1.16 -12.68 16 13 C 0.07 1.43 6.22 -3.62 -0.02 1.40 16 14 C -0.13 -2.17 2.76 -90.26 -0.25 -2.42 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.10 -1.32 6.72 -25.90 -0.17 -1.50 16 17 C -0.15 -1.77 6.75 -23.33 -0.16 -1.93 16 18 C 0.12 1.57 4.12 -26.51 -0.11 1.46 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 20 O -0.56 -7.27 13.31 -35.23 -0.47 -7.74 16 21 C -0.11 -1.85 2.49 -90.34 -0.22 -2.07 16 22 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 23 C 0.06 1.07 5.35 -3.07 -0.02 1.06 16 24 H 0.02 0.34 7.38 -51.93 -0.38 -0.05 16 25 H 0.05 1.26 7.77 -51.93 -0.40 0.85 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.27 8.03 6.43 -40.82 -0.26 7.77 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.74 6.93 -51.93 -0.36 1.38 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 34 H 0.37 2.93 9.12 45.56 0.42 3.35 16 35 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 281.93 15.07 4.25 4.25 Total: -1.00 -30.72 281.93 -7.96 -38.68 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.19 Total: 2.10 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.07 Total: -18.11 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.41 Total: -39.27 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.47 Total: -7.74 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.72 -7.96 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252866041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds