Wall clock time and date at job start Mon Mar 30 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47279 * 2 1 4 4 C 1.50707 * 109.47518 * 239.99957 * 2 1 3 5 5 H 1.08000 * 119.99548 * 267.88666 * 4 2 1 6 6 C 1.37877 * 119.99787 * 87.88063 * 4 2 1 7 7 N 1.31512 * 120.00234 * 353.54079 * 6 4 2 8 8 Si 1.86799 * 119.99548 * 173.54242 * 6 4 2 9 9 H 1.48491 * 109.47475 * 90.00087 * 8 6 4 10 10 H 1.48498 * 109.47163 * 329.99821 * 8 6 4 11 11 H 1.48501 * 109.46957 * 210.00304 * 8 6 4 12 12 N 1.46906 * 109.47479 * 120.00031 * 2 1 3 13 13 C 1.49620 * 111.00092 * 179.87686 * 12 2 1 14 14 C 1.50361 * 104.82744 * 114.66412 * 13 12 2 15 15 H 1.08998 * 110.05254 * 278.92234 * 14 13 12 16 16 C 1.51022 * 125.48592 * 144.39236 * 14 13 12 17 17 C 1.56398 * 101.59804 * 203.92941 * 16 14 13 18 18 C 1.55939 * 105.79632 * 25.00902 * 17 16 14 19 19 H 1.09002 * 110.59929 * 248.78678 * 18 17 16 20 20 O 1.42898 * 110.49333 * 126.18569 * 18 17 16 21 21 C 1.50301 * 104.16178 * 7.51324 * 18 17 16 22 22 H 1.09000 * 109.99043 * 80.52807 * 21 18 17 23 23 C 1.50103 * 110.99657 * 299.69003 * 12 2 1 24 24 H 1.08994 * 109.47295 * 306.61521 * 1 2 3 25 25 H 1.09001 * 109.47194 * 66.61538 * 1 2 3 26 26 H 1.08999 * 109.46929 * 186.61175 * 1 2 3 27 27 H 0.96996 * 119.99709 * 354.60147 * 7 6 4 28 28 H 1.09004 * 110.36350 * 233.49852 * 13 12 2 29 29 H 1.08997 * 110.36997 * 355.82279 * 13 12 2 30 30 H 1.09000 * 111.00148 * 322.01109 * 16 14 13 31 31 H 1.09000 * 110.99831 * 85.85002 * 16 14 13 32 32 H 1.08996 * 110.18280 * 265.92285 * 17 16 14 33 33 H 1.09003 * 110.24351 * 144.12323 * 17 16 14 34 34 H 0.96702 * 113.99603 * 65.25763 * 20 18 17 35 35 H 1.09005 * 110.85244 * 331.32885 * 23 12 2 36 36 H 1.09007 * 110.85310 * 94.95414 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2449 -1.7687 -1.1940 6 6 2.2206 -0.0094 -2.4027 7 7 1.8432 1.2478 -2.4849 8 14 3.0117 -0.8453 -3.8740 9 1 1.9589 -1.4750 -4.7108 10 1 3.9579 -1.8877 -3.4016 11 1 3.7473 0.1625 -4.6794 12 7 2.0197 -0.6925 1.1995 13 6 3.5154 -0.7150 1.2325 14 6 3.8866 0.1208 2.4259 15 1 3.8503 1.1790 2.1670 16 6 5.0536 -0.1381 3.3489 17 6 4.5865 0.5822 4.6561 18 6 3.0286 0.6079 4.5932 19 1 2.6671 1.6266 4.4526 20 8 2.4705 0.0396 5.7797 21 6 2.6949 -0.2387 3.3970 22 1 2.7390 -1.2946 3.6637 23 6 1.5446 -0.0075 2.4477 24 1 -0.3633 0.6129 0.8248 25 1 -0.3633 0.4079 -0.9433 26 1 -0.3633 -1.0208 0.1183 27 1 1.3623 1.6588 -1.7496 28 1 3.8767 -1.7359 1.3571 29 1 3.9216 -0.2765 0.3210 30 1 5.1881 -1.2065 3.5182 31 1 5.9668 0.3121 2.9597 32 1 4.9785 1.5988 4.6860 33 1 4.9184 0.0257 5.5326 34 1 2.6553 0.5458 6.5826 35 1 1.3944 1.0579 2.2724 36 1 0.6327 -0.4725 2.8224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252866041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:01 Heat of formation + Delta-G solvation = -66.378822 kcal Electronic energy + Delta-G solvation = -16378.225234 eV Core-core repulsion = 13861.089104 eV Total energy + Delta-G solvation = -2517.136130 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50507 -38.23481 -36.35448 -34.56715 -31.85212 -30.84642 -28.18066 -27.25015 -26.11034 -23.65018 -21.75613 -21.23153 -20.92279 -18.67668 -18.01259 -16.97882 -16.81641 -16.03296 -15.64348 -15.33590 -14.95668 -14.75677 -13.97793 -13.69491 -13.41461 -13.31189 -13.11999 -13.01316 -12.73981 -12.65518 -12.36564 -12.12524 -11.93560 -11.80951 -11.63402 -11.44711 -11.07202 -10.86287 -10.70662 -10.43705 -9.12475 -8.61058 -6.33195 1.52419 1.60241 1.78905 2.55072 2.96983 2.98442 3.22833 3.39602 3.75020 3.92289 4.03673 4.16933 4.29215 4.34837 4.47404 4.54373 4.57420 4.65356 4.70687 4.77716 4.79254 4.91582 4.98780 5.04686 5.05295 5.12138 5.18883 5.31069 5.37769 5.43825 5.89426 6.00086 6.29226 6.46315 6.68655 6.92452 7.46434 8.75093 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.007458 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.419471 B = 3753.653622 C = 4144.193988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.192 3.808 3 H -0.029 1.029 4 C -0.587 4.587 5 H 0.044 0.956 6 C -0.029 4.029 7 N -0.937 5.937 8 Si 1.114 2.886 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.283 1.283 12 N -0.529 5.529 13 C 0.069 3.931 14 C -0.124 4.124 15 H 0.056 0.944 16 C -0.097 4.097 17 C -0.140 4.140 18 C 0.121 3.879 19 H 0.063 0.937 20 O -0.577 6.577 21 C -0.104 4.104 22 H 0.077 0.923 23 C 0.056 3.944 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.257 0.743 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.031 0.969 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -0.370 14.608 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H -0.011 1.011 4 C -0.626 4.626 5 H 0.063 0.937 6 C -0.227 4.227 7 N -0.575 5.575 8 Si 0.936 3.064 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.208 1.208 12 N -0.254 5.254 13 C -0.058 4.058 14 C -0.144 4.144 15 H 0.075 0.925 16 C -0.135 4.135 17 C -0.178 4.178 18 C 0.061 3.939 19 H 0.081 0.919 20 O -0.386 6.386 21 C -0.123 4.123 22 H 0.095 0.905 23 C -0.072 4.072 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.049 0.951 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.796 -1.070 12.614 13.923 hybrid contribution -0.501 1.183 1.537 2.003 sum 5.295 0.113 14.151 15.109 Atomic orbital electron populations 1.21718 0.97458 0.99991 0.98575 1.19457 0.92380 0.90784 0.88962 1.01117 1.22097 1.47411 0.96723 0.96334 0.93715 1.27195 0.96241 0.95573 1.03674 1.70879 1.38059 1.13584 1.34965 0.82976 0.76298 0.74638 0.72495 1.20047 1.19769 1.20811 1.65174 1.07907 1.50792 1.01517 1.21812 0.88323 0.99317 0.96353 1.22405 0.97584 0.99396 0.94992 0.92538 1.21758 0.96336 1.01441 0.93931 1.23603 0.93781 1.02029 0.98372 1.21669 0.93148 0.95264 0.83787 0.91883 1.86547 1.78684 1.55280 1.18073 1.21989 0.95170 1.01342 0.93798 0.90484 1.22295 0.97983 0.96288 0.90594 0.94317 0.95083 0.93385 0.93315 0.91302 0.94067 0.90742 0.90230 0.89581 0.89028 0.75496 0.95057 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.82 71.98 0.63 -5.14 16 2 C 0.19 10.06 1.38 44.17 0.06 10.12 16 3 H -0.03 -1.67 6.97 -2.39 -0.02 -1.68 16 4 C -0.59 -33.61 7.16 25.60 0.18 -33.43 16 5 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 6 C -0.03 -1.65 5.45 84.65 0.46 -1.19 16 7 N -0.94 -57.46 13.56 21.45 0.29 -57.17 16 8 Si 1.11 50.92 29.91 68.60 2.05 52.97 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.53 -24.09 5.13 -868.03 -4.45 -28.54 16 13 C 0.07 2.89 6.22 84.92 0.53 3.41 16 14 C -0.12 -4.05 2.76 -10.56 -0.03 -4.08 16 15 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.10 -2.31 6.72 31.13 0.21 -2.11 16 17 C -0.14 -2.70 6.75 32.80 0.22 -2.48 16 18 C 0.12 2.91 4.12 30.74 0.13 3.03 16 19 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 20 O -0.58 -13.01 13.31 -148.98 -1.98 -14.99 16 21 C -0.10 -3.30 2.49 -10.61 -0.03 -3.32 16 22 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 23 C 0.06 2.13 5.35 85.00 0.45 2.58 16 24 H 0.04 1.65 7.38 -2.39 -0.02 1.63 16 25 H 0.03 1.58 7.77 -2.39 -0.02 1.56 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.26 15.95 6.43 -92.71 -0.60 15.36 16 28 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.04 1.97 6.93 -2.39 -0.02 1.96 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 34 H 0.40 4.71 9.12 -74.06 -0.68 4.04 16 35 H 0.03 1.23 7.77 -2.38 -0.02 1.21 16 36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -67.23 281.93 -0.72 -67.96 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.54 Total: 12.38 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 2.83 Total: -32.60 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -4.16 Total: -85.72 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.98 Total: -14.99 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -67.23 -0.72 -67.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252866041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.580 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds