Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53778 * 113.61727 * 274.13766 * 5 4 3 7 7 C 1.53956 * 87.02468 * 220.04570 * 6 5 4 8 8 C 1.53784 * 113.61658 * 176.52792 * 5 4 3 9 9 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 10 10 O 1.21282 * 120.00692 * 179.97438 * 9 2 1 11 11 C 1.50705 * 119.99759 * 0.02562 * 9 2 1 12 12 C 1.50698 * 109.47452 * 180.02562 * 11 9 2 13 13 H 1.07998 * 119.99590 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00043 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99796 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00225 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47128 * 90.00225 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00549 * 16 14 12 19 19 H 1.48495 * 109.46908 * 330.00242 * 16 14 12 20 20 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 21 21 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 22 22 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 23 23 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 24 24 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 26 26 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 27 27 H 1.09000 * 112.84915 * 45.33452 * 5 4 3 28 28 H 1.08996 * 113.61184 * 334.56845 * 6 5 4 29 29 H 1.09000 * 113.61578 * 105.46835 * 6 5 4 30 30 H 1.09002 * 113.53647 * 270.81670 * 7 6 5 31 31 H 1.08996 * 113.66740 * 139.92974 * 7 6 5 32 32 H 1.08998 * 113.61407 * 254.52625 * 8 5 4 33 33 H 1.08996 * 113.61156 * 25.35491 * 8 5 4 34 34 H 1.09006 * 109.46606 * 299.99889 * 11 9 2 35 35 H 1.08999 * 109.47462 * 59.99201 * 11 9 2 36 36 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4425 6 6 2.3072 4.2716 -1.3411 7 6 3.2389 4.9421 -2.3670 8 6 3.5986 3.5267 -2.8490 9 6 2.1389 -1.1671 -0.0005 10 8 3.3517 -1.1671 -0.0010 11 6 1.3855 -2.4723 -0.0017 12 6 2.3648 -3.6177 -0.0014 13 1 3.4266 -3.4203 -0.0010 14 6 1.9052 -4.9176 -0.0018 15 7 2.7600 -5.9172 -0.0011 16 14 0.0687 -5.2590 -0.0020 17 1 -0.4180 -5.3491 -1.4021 18 1 -0.1964 -6.5417 0.6978 19 1 -0.6396 -4.1576 0.6983 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6083 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 3.0415 0.9509 -1.9563 26 1 1.5000 1.8408 -1.9563 27 1 4.0470 3.0456 -0.7364 28 1 1.2972 4.1020 -1.7140 29 1 2.3232 4.7461 -0.3599 30 1 4.0749 5.4743 -1.9131 31 1 2.7122 5.5368 -3.1133 32 1 4.6556 3.4008 -3.0834 33 1 2.9431 3.1520 -3.6351 34 1 0.7585 -2.5306 0.8881 35 1 0.7591 -2.5295 -0.8919 36 1 2.4366 -6.8317 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258654310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -28.984449 kcal Electronic energy + Delta-G solvation = -15506.842157 eV Core-core repulsion = 12991.327569 eV Total energy + Delta-G solvation = -2515.514588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38500 -38.57349 -35.07239 -32.89073 -31.51350 -29.35600 -26.56006 -25.75485 -25.06754 -22.90442 -21.44012 -19.50119 -18.34838 -17.02403 -15.87256 -15.65595 -15.63059 -14.90660 -14.45133 -14.07503 -13.76530 -12.97217 -12.82129 -12.57758 -12.54353 -12.22259 -12.03774 -11.92189 -11.62908 -11.33254 -10.85302 -10.72608 -10.64303 -10.55525 -10.29887 -10.13355 -9.93413 -9.20691 -8.70734 -8.55990 -8.13220 -6.01116 -4.00412 3.27206 3.33075 3.35554 3.57984 3.63316 4.42213 4.53245 4.56836 4.67934 4.77593 5.16481 5.28940 5.35438 5.44748 5.47702 5.61747 5.64780 5.65053 5.75586 5.77908 5.83234 5.84526 5.91624 5.96720 6.14112 6.28774 6.40697 6.50027 6.62972 6.94641 7.07994 7.56279 8.04315 8.58080 9.12287 9.20224 9.57600 11.12045 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050689 B = 0.005388 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.257481 B = 5195.402576 C = 5468.989574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.636 5.636 3 C 0.119 3.881 4 C -0.124 4.124 5 C -0.107 4.107 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.138 4.138 9 C 0.522 3.478 10 O -0.530 6.530 11 C -0.028 4.028 12 C -0.512 4.512 13 H 0.092 0.908 14 C 0.068 3.932 15 N -0.898 5.898 16 Si 0.874 3.126 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.267 1.267 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 19.475 -2.611 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.373 5.373 3 C -0.004 4.004 4 C -0.163 4.163 5 C -0.126 4.126 6 C -0.175 4.175 7 C -0.181 4.181 8 C -0.175 4.175 9 C 0.312 3.688 10 O -0.405 6.405 11 C -0.067 4.067 12 C -0.550 4.550 13 H 0.110 0.890 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.191 1.191 20 H 0.067 0.933 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.156 19.243 -2.595 20.090 hybrid contribution -1.128 -0.291 -0.068 1.167 sum -6.283 18.951 -2.663 20.142 Atomic orbital electron populations 1.21674 0.80387 1.02629 1.01227 1.48144 1.06528 1.06151 1.76457 1.21320 0.97754 0.84964 0.96379 1.21928 0.99975 0.96466 0.97902 1.22491 0.98640 0.93795 0.97649 1.23019 0.98244 0.96987 0.99262 1.22839 0.99707 0.96515 0.99023 1.22930 1.01467 0.96041 0.97083 1.21423 0.88421 0.85169 0.73772 1.90570 1.14637 1.87083 1.48161 1.19698 0.97620 0.91189 0.98206 1.21031 0.95305 0.88181 1.50488 0.89031 1.24981 0.97409 0.96083 0.94835 1.69902 1.33993 0.98937 1.50839 0.86889 0.86405 0.78032 0.78553 1.20136 1.21114 1.19147 0.93343 0.90774 0.92008 0.91593 0.90362 0.91213 0.92130 0.89181 0.90259 0.91732 0.90419 0.91800 0.91620 0.90221 0.93725 0.94174 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.28 59.84 0.62 1.74 16 2 N -0.64 -11.05 2.87 -181.57 -0.52 -11.57 16 3 C 0.12 1.74 5.45 -4.04 -0.02 1.72 16 4 C -0.12 -1.66 5.36 -26.74 -0.14 -1.80 16 5 C -0.11 -1.17 3.64 -89.81 -0.33 -1.50 16 6 C -0.14 -1.25 7.65 -25.83 -0.20 -1.45 16 7 C -0.14 -1.24 8.09 -25.82 -0.21 -1.45 16 8 C -0.14 -1.39 7.65 -25.91 -0.20 -1.59 16 9 C 0.52 11.94 7.67 -10.98 -0.08 11.85 16 10 O -0.53 -14.14 15.04 5.56 0.08 -14.06 16 11 C -0.03 -0.67 3.08 -29.03 -0.09 -0.76 16 12 C -0.51 -15.29 9.48 -34.44 -0.33 -15.62 16 13 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 16 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.03 6.44 -51.93 -0.33 0.69 16 22 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 23 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 24 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.04 1.03 6.46 -51.93 -0.34 0.69 16 35 H 0.04 0.92 7.54 -51.93 -0.39 0.53 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -33.67 293.72 -6.99 -40.66 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.00 Total: -1.49 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.08 Total: -6.93 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.25 Total: -39.03 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.67 -6.99 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258654310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.676 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds