Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53778 * 113.61727 * 274.13766 * 5 4 3 7 7 C 1.53956 * 87.02468 * 220.04570 * 6 5 4 8 8 C 1.53784 * 113.61658 * 176.52792 * 5 4 3 9 9 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 10 10 O 1.21282 * 120.00692 * 179.97438 * 9 2 1 11 11 C 1.50705 * 119.99759 * 0.02562 * 9 2 1 12 12 C 1.50698 * 109.47452 * 180.02562 * 11 9 2 13 13 H 1.07998 * 119.99590 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00043 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99796 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00225 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47128 * 90.00225 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00549 * 16 14 12 19 19 H 1.48495 * 109.46908 * 330.00242 * 16 14 12 20 20 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 21 21 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 22 22 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 23 23 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 24 24 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 26 26 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 27 27 H 1.09000 * 112.84915 * 45.33452 * 5 4 3 28 28 H 1.08996 * 113.61184 * 334.56845 * 6 5 4 29 29 H 1.09000 * 113.61578 * 105.46835 * 6 5 4 30 30 H 1.09002 * 113.53647 * 270.81670 * 7 6 5 31 31 H 1.08996 * 113.66740 * 139.92974 * 7 6 5 32 32 H 1.08998 * 113.61407 * 254.52625 * 8 5 4 33 33 H 1.08996 * 113.61156 * 25.35491 * 8 5 4 34 34 H 1.09006 * 109.46606 * 299.99889 * 11 9 2 35 35 H 1.08999 * 109.47462 * 59.99201 * 11 9 2 36 36 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4425 6 6 2.3072 4.2716 -1.3411 7 6 3.2389 4.9421 -2.3670 8 6 3.5986 3.5267 -2.8490 9 6 2.1389 -1.1671 -0.0005 10 8 3.3517 -1.1671 -0.0010 11 6 1.3855 -2.4723 -0.0017 12 6 2.3648 -3.6177 -0.0014 13 1 3.4266 -3.4203 -0.0010 14 6 1.9052 -4.9176 -0.0018 15 7 2.7600 -5.9172 -0.0011 16 14 0.0687 -5.2590 -0.0020 17 1 -0.4180 -5.3491 -1.4021 18 1 -0.1964 -6.5417 0.6978 19 1 -0.6396 -4.1576 0.6983 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6083 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 3.0415 0.9509 -1.9563 26 1 1.5000 1.8408 -1.9563 27 1 4.0470 3.0456 -0.7364 28 1 1.2972 4.1020 -1.7140 29 1 2.3232 4.7461 -0.3599 30 1 4.0749 5.4743 -1.9131 31 1 2.7122 5.5368 -3.1133 32 1 4.6556 3.4008 -3.0834 33 1 2.9431 3.1520 -3.6351 34 1 0.7585 -2.5306 0.8881 35 1 0.7591 -2.5295 -0.8919 36 1 2.4366 -6.8317 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258654310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -51.194451 kcal Electronic energy + Delta-G solvation = -15507.805255 eV Core-core repulsion = 12991.327569 eV Total energy + Delta-G solvation = -2516.477686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80327 -39.64617 -36.58965 -35.06258 -32.88833 -31.19629 -27.68078 -26.72987 -26.34546 -24.53217 -22.65269 -20.37707 -19.85487 -19.11488 -17.49007 -17.14487 -16.73502 -16.23847 -16.05129 -15.35014 -15.13361 -14.53239 -14.34346 -13.97245 -13.56770 -13.37208 -13.27713 -13.13860 -13.00439 -12.69189 -12.44741 -12.35191 -11.87952 -11.79734 -11.48895 -11.44608 -11.13808 -10.99454 -10.79323 -10.49595 -9.53323 -8.26991 -6.35888 1.38271 1.43232 1.53686 1.83865 2.22696 2.38105 3.05964 3.68332 3.76563 3.86866 3.94234 4.03346 4.31598 4.37872 4.46732 4.60362 4.61532 4.67903 4.74507 4.86924 4.89092 4.91826 4.96511 5.01636 5.07069 5.11271 5.17933 5.25958 5.44566 5.48152 5.65651 5.76980 6.22606 6.53206 6.81360 7.24708 7.45972 8.90916 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050689 B = 0.005388 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.257481 B = 5195.402576 C = 5468.989574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.625 5.625 3 C 0.116 3.884 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.127 4.127 7 C -0.136 4.136 8 C -0.144 4.144 9 C 0.513 3.487 10 O -0.588 6.588 11 C -0.022 4.022 12 C -0.537 4.537 13 H 0.025 0.975 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.962 3.038 17 H -0.261 1.261 18 H -0.284 1.284 19 H -0.228 1.228 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 21.727 -2.602 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.358 5.358 3 C -0.006 4.006 4 C -0.153 4.153 5 C -0.133 4.133 6 C -0.164 4.164 7 C -0.173 4.173 8 C -0.182 4.182 9 C 0.304 3.696 10 O -0.468 6.468 11 C -0.062 4.062 12 C -0.575 4.575 13 H 0.043 0.957 14 C -0.196 4.196 15 N -0.595 5.595 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.150 1.150 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.120 0.880 23 H 0.127 0.873 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.201 21.565 -2.588 23.588 hybrid contribution 0.224 -0.959 -0.081 0.989 sum -8.977 20.606 -2.669 22.634 Atomic orbital electron populations 1.22056 0.77145 1.04644 1.03067 1.48118 1.08552 1.05229 1.73948 1.21533 0.97095 0.84530 0.97428 1.21826 1.00372 0.96502 0.96586 1.22510 0.99002 0.93475 0.98279 1.22990 0.98211 0.95167 1.00054 1.22818 0.99887 0.95542 0.99072 1.22982 1.01155 0.97490 0.96546 1.21293 0.87717 0.86667 0.73972 1.90552 1.16994 1.88025 1.51211 1.19582 0.96665 0.89935 0.99997 1.21204 0.93693 0.91104 1.51476 0.95674 1.26183 1.04670 0.95141 0.93566 1.70106 1.37552 0.99749 1.52061 0.85521 0.77643 0.78879 0.79695 1.18561 1.20980 1.15043 0.91512 0.90887 0.87998 0.87322 0.93244 0.95378 0.90406 0.90073 0.89270 0.90618 0.89869 0.90523 0.92320 0.90208 0.91380 0.91791 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 10.28 127.77 1.31 2.92 16 2 N -0.62 -20.57 2.87 -846.77 -2.43 -23.00 16 3 C 0.12 3.25 5.45 86.38 0.47 3.72 16 4 C -0.11 -2.96 5.36 30.59 0.16 -2.79 16 5 C -0.11 -2.37 3.64 -10.27 -0.04 -2.41 16 6 C -0.13 -1.90 7.65 31.18 0.24 -1.66 16 7 C -0.14 -2.00 8.09 31.18 0.25 -1.75 16 8 C -0.14 -2.77 7.65 31.12 0.24 -2.53 16 9 C 0.51 23.81 7.67 87.66 0.67 24.48 16 10 O -0.59 -33.44 15.04 -3.04 -0.05 -33.49 16 11 C -0.02 -1.06 3.08 29.10 0.09 -0.97 16 12 C -0.54 -33.37 9.48 25.60 0.24 -33.13 16 13 H 0.02 1.84 7.00 -2.91 -0.02 1.82 16 14 C 0.00 0.03 5.47 84.65 0.46 0.50 16 15 N -0.95 -62.36 13.96 21.45 0.30 -62.07 16 16 Si 0.96 42.57 27.47 68.60 1.88 44.46 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.07 1.67 6.44 -2.38 -0.02 1.66 16 22 H 0.10 1.49 7.89 -2.39 -0.02 1.48 16 23 H 0.11 2.14 7.89 -2.39 -0.02 2.12 16 24 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.07 2.93 6.46 -2.38 -0.02 2.92 16 35 H 0.06 2.75 7.54 -2.39 -0.02 2.73 16 36 H 0.27 16.10 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -80.13 293.72 4.79 -75.34 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.98 Total: 12.38 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.11 Total: -13.62 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.13 Total: -85.07 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.05 Total: -33.49 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.46 kcal Total: -80.13 4.79 -75.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258654310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.147 kcal (2) G-P(sol) polarization free energy of solvation -80.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds