Wall clock time and date at job start Mon Mar 30 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.47473 * 180.02562 * 5 3 2 7 7 H 1.08004 * 119.99799 * 359.97438 * 6 5 3 8 8 C 1.37875 * 120.00288 * 180.02562 * 6 5 3 9 9 N 1.31519 * 119.99934 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47222 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47202 * 119.99559 * 10 8 6 13 13 H 1.48494 * 109.47293 * 239.99929 * 10 8 6 14 14 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 15 15 C 1.53004 * 109.47487 * 59.99455 * 14 2 1 16 16 C 1.53001 * 109.47239 * 179.97438 * 15 14 2 17 17 C 1.52997 * 109.46736 * 60.00467 * 16 15 14 18 18 C 1.53006 * 109.47368 * 299.99585 * 17 16 15 19 19 C 1.53001 * 109.46527 * 60.00290 * 18 17 16 20 20 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 23 23 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 24 24 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 25 25 H 0.96991 * 120.00138 * 180.02562 * 9 8 6 26 26 H 1.09003 * 109.47380 * 180.02562 * 14 2 1 27 27 H 1.08993 * 109.47015 * 300.00345 * 15 14 2 28 28 H 1.09000 * 109.46385 * 60.00312 * 15 14 2 29 29 H 1.08995 * 109.47114 * 300.00810 * 16 15 14 30 30 H 1.08993 * 109.47156 * 180.02562 * 16 15 14 31 31 H 1.09007 * 109.47077 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47454 * 59.99930 * 17 16 15 33 33 H 1.08993 * 109.46907 * 300.00168 * 18 17 16 34 34 H 1.09000 * 109.46878 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46671 * 179.97438 * 19 18 17 36 36 H 1.08993 * 109.47626 * 60.00318 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6177 -0.0002 7 1 3.4266 3.4204 -0.0006 8 6 1.9053 4.9177 0.0007 9 7 0.6122 5.1580 0.0017 10 14 3.1192 6.3374 0.0005 11 1 4.5050 5.8038 -0.0001 12 1 2.9080 7.1690 -1.2115 13 1 2.9096 7.1681 1.2134 14 6 2.1975 -1.2687 -0.0006 15 6 1.8278 -2.0706 -1.2501 16 6 2.5932 -3.3954 -1.2510 17 6 2.2241 -4.1983 -0.0020 18 6 2.5938 -3.3966 1.2476 19 6 1.8284 -2.0718 1.2483 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 0.7585 2.5303 -0.8891 24 1 0.7592 2.5298 0.8908 25 1 0.2889 6.0725 0.0020 26 1 3.2692 -1.0696 0.0000 27 1 0.7562 -2.2697 -1.2501 28 1 2.0912 -1.4986 -2.1398 29 1 3.6648 -3.1958 -1.2510 30 1 2.3302 -3.9664 -2.1413 31 1 2.7691 -5.1424 -0.0028 32 1 1.1525 -4.3979 -0.0019 33 1 3.6654 -3.1971 1.2474 34 1 2.3304 -3.9685 2.1373 35 1 2.0914 -1.5008 2.1388 36 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258690601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:19 Heat of formation + Delta-G solvation = -63.579253 kcal Electronic energy + Delta-G solvation = -15957.476442 eV Core-core repulsion = 13440.461710 eV Total energy + Delta-G solvation = -2517.014731 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56005 -37.53265 -34.39816 -32.92277 -30.73270 -30.15832 -28.25818 -26.26137 -23.82587 -22.55984 -21.80424 -19.54494 -18.43278 -16.55618 -15.91116 -15.56588 -14.79508 -14.76548 -14.30478 -14.09597 -13.82509 -12.99939 -12.67829 -12.43394 -12.27662 -12.11615 -12.07232 -11.78115 -11.20993 -11.06885 -11.05297 -10.75560 -10.62895 -10.60075 -10.22367 -10.15811 -9.89713 -9.17825 -8.53858 -8.41309 -8.00049 -6.03317 -4.02372 3.35081 3.41916 3.50317 3.69445 3.72665 4.50684 4.71486 4.81405 4.93072 5.17936 5.27744 5.34779 5.42998 5.52055 5.55118 5.61239 5.67155 5.77477 5.90221 5.95610 6.01480 6.08364 6.13093 6.17300 6.20929 6.29818 6.44890 6.57215 7.13097 7.28906 7.37056 7.99075 8.02907 8.42256 9.08827 9.26300 9.62658 11.09215 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054613 B = 0.005866 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.573703 B = 4771.906167 C = 4933.087154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.629 5.629 3 C 0.515 3.485 4 O -0.547 6.547 5 C 0.008 3.992 6 C -0.507 4.507 7 H 0.075 0.925 8 C 0.054 3.946 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.138 3.862 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.126 4.126 20 H 0.047 0.953 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -16.800 -0.117 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.365 5.365 3 C 0.307 3.693 4 O -0.423 6.423 5 C -0.032 4.032 6 C -0.545 4.545 7 H 0.093 0.907 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.728 3.272 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.034 3.966 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.164 4.164 20 H 0.066 0.934 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.086 -16.617 -0.117 16.653 hybrid contribution 0.290 0.793 0.023 0.845 sum -0.796 -15.824 -0.094 15.844 Atomic orbital electron populations 1.21648 0.80439 1.02667 1.01212 1.48185 1.06542 1.05664 1.76080 1.22053 0.88518 0.85733 0.72966 1.90512 1.15003 1.87275 1.49508 1.19253 0.96745 0.87937 0.99218 1.21244 0.93988 0.89531 1.49745 0.90701 1.25005 0.95327 0.99025 0.95270 1.69967 1.12516 1.20259 1.51425 0.86390 0.81605 0.81792 0.77442 1.19492 1.21020 1.21026 1.20919 0.98598 0.83435 0.93623 1.21883 1.00299 0.95888 0.98500 1.21494 1.00544 0.95770 0.97627 1.21550 1.01154 0.98094 0.94837 1.21501 1.00538 0.95807 0.97617 1.21869 1.00279 0.95809 0.98481 0.93415 0.90347 0.92185 0.93511 0.93531 0.93006 0.88610 0.91874 0.91686 0.91828 0.92041 0.92237 0.92118 0.91833 0.92049 0.91734 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 9.30 59.85 0.56 1.81 16 2 N -0.63 -11.57 2.76 -173.92 -0.48 -12.05 16 3 C 0.52 12.24 7.67 -10.99 -0.08 12.16 16 4 O -0.55 -14.72 14.79 5.55 0.08 -14.64 16 5 C 0.01 0.20 4.01 -29.03 -0.12 0.08 16 6 C -0.51 -15.00 8.92 -34.44 -0.31 -15.31 16 7 H 0.07 2.32 6.75 -52.48 -0.35 1.97 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.14 2.16 2.52 -67.93 -0.17 1.99 16 15 C -0.13 -1.65 5.18 -26.73 -0.14 -1.78 16 16 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 17 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 18 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 19 C -0.13 -1.64 5.21 -26.73 -0.14 -1.78 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.08 1.25 6.44 -51.93 -0.33 0.92 16 22 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 23 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 24 H 0.05 1.23 8.11 -51.93 -0.42 0.81 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.10 1.76 6.90 -51.93 -0.36 1.40 16 27 H 0.06 0.74 6.66 -51.93 -0.35 0.40 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -32.25 285.68 -7.22 -39.47 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.87 Total: -3.07 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.97 Total: -5.45 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.26 Total: -38.00 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.08 Total: -14.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.25 -7.22 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258690601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.107 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds