Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.47473 * 180.02562 * 5 3 2 7 7 H 1.08004 * 119.99799 * 359.97438 * 6 5 3 8 8 C 1.37875 * 120.00288 * 180.02562 * 6 5 3 9 9 N 1.31519 * 119.99934 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47222 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47202 * 119.99559 * 10 8 6 13 13 H 1.48494 * 109.47293 * 239.99929 * 10 8 6 14 14 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 15 15 C 1.53004 * 109.47487 * 59.99455 * 14 2 1 16 16 C 1.53001 * 109.47239 * 179.97438 * 15 14 2 17 17 C 1.52997 * 109.46736 * 60.00467 * 16 15 14 18 18 C 1.53006 * 109.47368 * 299.99585 * 17 16 15 19 19 C 1.53001 * 109.46527 * 60.00290 * 18 17 16 20 20 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 23 23 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 24 24 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 25 25 H 0.96991 * 120.00138 * 180.02562 * 9 8 6 26 26 H 1.09003 * 109.47380 * 180.02562 * 14 2 1 27 27 H 1.08993 * 109.47015 * 300.00345 * 15 14 2 28 28 H 1.09000 * 109.46385 * 60.00312 * 15 14 2 29 29 H 1.08995 * 109.47114 * 300.00810 * 16 15 14 30 30 H 1.08993 * 109.47156 * 180.02562 * 16 15 14 31 31 H 1.09007 * 109.47077 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47454 * 59.99930 * 17 16 15 33 33 H 1.08993 * 109.46907 * 300.00168 * 18 17 16 34 34 H 1.09000 * 109.46878 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46671 * 179.97438 * 19 18 17 36 36 H 1.08993 * 109.47626 * 60.00318 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6177 -0.0002 7 1 3.4266 3.4204 -0.0006 8 6 1.9053 4.9177 0.0007 9 7 0.6122 5.1580 0.0017 10 14 3.1192 6.3374 0.0005 11 1 4.5050 5.8038 -0.0001 12 1 2.9080 7.1690 -1.2115 13 1 2.9096 7.1681 1.2134 14 6 2.1975 -1.2687 -0.0006 15 6 1.8278 -2.0706 -1.2501 16 6 2.5932 -3.3954 -1.2510 17 6 2.2241 -4.1983 -0.0020 18 6 2.5938 -3.3966 1.2476 19 6 1.8284 -2.0718 1.2483 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 0.7585 2.5303 -0.8891 24 1 0.7592 2.5298 0.8908 25 1 0.2889 6.0725 0.0020 26 1 3.2692 -1.0696 0.0000 27 1 0.7562 -2.2697 -1.2501 28 1 2.0912 -1.4986 -2.1398 29 1 3.6648 -3.1958 -1.2510 30 1 2.3302 -3.9664 -2.1413 31 1 2.7691 -5.1424 -0.0028 32 1 1.1525 -4.3979 -0.0019 33 1 3.6654 -3.1971 1.2474 34 1 2.3304 -3.9685 2.1373 35 1 2.0914 -1.5008 2.1388 36 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258690601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = -83.330738 kcal Electronic energy + Delta-G solvation = -15958.332930 eV Core-core repulsion = 13440.461710 eV Total energy + Delta-G solvation = -2517.871220 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06414 -38.92596 -35.88166 -35.13433 -31.70656 -31.68630 -29.97625 -27.66000 -25.81646 -23.51868 -23.09155 -20.59881 -20.04153 -18.64466 -17.44899 -17.33611 -16.46948 -16.39099 -15.69248 -15.08084 -14.89950 -14.56373 -14.22554 -14.07363 -13.75931 -13.36945 -13.18977 -13.11486 -13.06788 -12.77917 -12.59401 -12.10241 -12.05285 -12.02729 -11.50867 -11.39251 -11.24945 -11.16173 -10.64128 -10.42274 -9.50342 -8.26971 -6.34489 1.38102 1.38441 1.53796 1.84352 2.17992 2.43599 3.07765 3.69033 3.84614 4.01995 4.12303 4.25529 4.32395 4.38631 4.51506 4.55120 4.59149 4.70023 4.71937 4.89440 4.93452 5.02667 5.11637 5.18065 5.21925 5.22623 5.24914 5.34048 5.42877 5.54044 5.66953 5.82395 6.04323 6.54690 6.79056 7.31992 7.45945 8.85454 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054613 B = 0.005866 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.573703 B = 4771.906167 C = 4933.087154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.512 3.488 4 O -0.590 6.590 5 C 0.015 3.985 6 C -0.539 4.539 7 H 0.051 0.949 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.965 3.035 11 H -0.277 1.277 12 H -0.270 1.270 13 H -0.270 1.270 14 C 0.132 3.868 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.119 4.119 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.268 0.732 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -18.345 -0.139 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.303 3.697 4 O -0.471 6.471 5 C -0.024 4.024 6 C -0.577 4.577 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.789 3.211 11 H -0.202 1.202 12 H -0.195 1.195 13 H -0.196 1.196 14 C 0.029 3.971 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.158 4.158 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.117 0.883 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.120 -18.206 -0.138 18.329 hybrid contribution 0.542 1.232 0.032 1.346 sum -1.578 -16.974 -0.106 17.048 Atomic orbital electron populations 1.21900 0.77953 1.03986 1.02604 1.48151 1.08135 1.05165 1.73727 1.21613 0.87838 0.86789 0.73438 1.90481 1.16548 1.88062 1.51998 1.19040 0.96035 0.88876 0.98426 1.21417 0.93553 0.91483 1.51294 0.93044 1.25786 0.97259 1.01316 0.94361 1.70031 1.13826 1.21332 1.51129 0.85401 0.78759 0.78530 0.78373 1.20181 1.19524 1.19560 1.21167 0.96441 0.82645 0.96842 1.21842 1.01892 0.96369 0.95795 1.21505 0.99529 0.94738 0.99449 1.21539 1.02349 0.98194 0.92995 1.21512 0.99517 0.94758 0.99459 1.21822 1.01827 0.96317 0.95800 0.91924 0.91635 0.88298 0.94096 0.94279 0.92313 0.92151 0.89752 0.93628 0.92978 0.89989 0.90376 0.90616 0.92974 0.90058 0.93778 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 9.30 127.77 1.19 3.39 16 2 N -0.62 -22.85 2.76 -822.57 -2.27 -25.12 16 3 C 0.51 25.30 7.67 87.66 0.67 25.97 16 4 O -0.59 -33.52 14.79 -3.04 -0.04 -33.57 16 5 C 0.02 0.84 4.01 29.10 0.12 0.95 16 6 C -0.54 -33.03 8.92 25.60 0.23 -32.80 16 7 H 0.05 3.34 6.75 -2.91 -0.02 3.32 16 8 C 0.01 0.67 5.46 84.65 0.46 1.13 16 9 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 10 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.13 4.10 2.52 44.99 0.11 4.22 16 15 C -0.12 -2.92 5.18 30.60 0.16 -2.76 16 16 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 17 C -0.11 -1.75 5.92 30.60 0.18 -1.57 16 18 C -0.11 -2.18 5.92 30.60 0.18 -2.00 16 19 C -0.12 -2.92 5.21 30.60 0.16 -2.76 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.06 2.06 6.44 -2.38 -0.02 2.04 16 22 H 0.10 2.05 6.43 -2.39 -0.02 2.03 16 23 H 0.04 2.23 7.40 -2.39 -0.02 2.21 16 24 H 0.04 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.06 2.32 6.90 -2.39 -0.02 2.30 16 27 H 0.08 1.68 6.66 -2.39 -0.02 1.67 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -71.70 285.68 4.67 -67.02 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.04 Total: 6.09 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 3.64 Total: -8.19 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.99 Total: -79.67 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.04 Total: -33.57 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.70 4.67 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258690601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.309 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds