Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 120.00643 * 2 1 4 4 N 1.34777 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99858 * 4.38931 * 4 2 1 6 6 C 1.46499 * 120.00367 * 184.38811 * 4 2 1 7 7 C 1.53001 * 109.46984 * 307.78770 * 6 4 2 8 8 C 1.52995 * 109.46944 * 299.99702 * 7 6 4 9 9 C 1.53001 * 109.47423 * 300.00231 * 8 7 6 10 10 C 1.50695 * 109.47507 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99700 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00097 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00137 * 359.72585 * 12 10 9 14 14 Si 1.86800 * 119.99639 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47255 * 60.00353 * 14 12 10 16 16 H 1.48502 * 109.46884 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47280 * 299.99972 * 14 12 10 18 18 C 1.53001 * 109.47249 * 59.99955 * 9 8 7 19 19 C 1.53002 * 109.47347 * 187.78424 * 6 4 2 20 20 H 1.09010 * 109.47171 * 264.74921 * 1 2 3 21 21 H 1.08997 * 109.46998 * 24.74144 * 1 2 3 22 22 H 1.08991 * 109.47933 * 144.74884 * 1 2 3 23 23 H 1.09001 * 109.47231 * 204.14352 * 5 4 2 24 24 H 1.09000 * 109.46954 * 324.13850 * 5 4 2 25 25 H 1.09001 * 109.47426 * 84.14367 * 5 4 2 26 26 H 1.09004 * 109.47181 * 67.78571 * 6 4 2 27 27 H 1.09006 * 109.46661 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46921 * 59.99673 * 7 6 4 29 29 H 1.09004 * 109.47286 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47136 * 59.99998 * 8 7 6 31 31 H 1.09004 * 109.46691 * 300.00398 * 9 8 7 32 32 H 0.96993 * 119.99852 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46955 * 59.99826 * 18 9 8 34 34 H 1.09000 * 109.47079 * 180.02562 * 18 9 8 35 35 H 1.08997 * 109.47027 * 179.97438 * 19 6 4 36 36 H 1.09001 * 109.47297 * 300.00278 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4515 -2.4341 -0.0960 6 6 3.6426 -1.1691 0.0976 7 6 4.2259 -0.2435 -0.9719 8 6 3.8062 -0.7373 -2.3578 9 6 4.3297 -2.1588 -2.5729 10 6 3.9169 -2.6450 -3.9382 11 1 3.3385 -2.0043 -4.5874 12 6 4.2775 -3.9076 -4.3586 13 7 4.9864 -4.6857 -3.5701 14 14 3.7651 -4.5105 -6.0507 15 1 4.3308 -3.6117 -7.0887 16 1 4.2733 -5.8901 -6.2595 17 1 2.2833 -4.5092 -6.1489 18 6 3.7464 -3.0844 -1.5034 19 6 4.1662 -2.5906 -0.1175 20 1 -0.3634 -0.0941 1.0234 21 1 -0.3633 0.9333 -0.4301 22 1 -0.3635 -0.8391 -0.5931 23 1 2.0537 -3.2338 0.3353 24 1 0.5105 -2.3540 0.4483 25 1 1.2477 -2.6572 -1.1433 26 1 3.9416 -0.8173 1.0850 27 1 5.3136 -0.2446 -0.8993 28 1 3.8529 0.7692 -0.8186 29 1 4.2214 -0.0776 -3.1197 30 1 2.7186 -0.7359 -2.4300 31 1 5.4174 -2.1601 -2.5006 32 1 5.2397 -5.5741 -3.8657 33 1 2.6588 -3.0830 -1.5756 34 1 4.1198 -4.0970 -1.6565 35 1 5.2538 -2.5919 -0.0457 36 1 3.7506 -3.2501 0.6444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258988812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = -37.045550 kcal Electronic energy + Delta-G solvation = -16769.429058 eV Core-core repulsion = 14253.564914 eV Total energy + Delta-G solvation = -2515.864144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08112 -37.25434 -34.38379 -32.55595 -30.19096 -30.01032 -28.44868 -26.22538 -24.41825 -21.65679 -21.10106 -19.41156 -18.14783 -16.49733 -16.12509 -15.66575 -15.28896 -14.59351 -14.04918 -13.40214 -13.21849 -12.93395 -12.67186 -12.48316 -12.01903 -11.87337 -11.60771 -11.43837 -11.39253 -11.11249 -10.86818 -10.68028 -10.26940 -10.10337 -9.74652 -9.40177 -9.23690 -8.64881 -8.59502 -8.24350 -8.07792 -5.95498 -4.01154 2.97185 3.31778 3.36586 3.39728 3.44698 4.45425 4.89022 5.30040 5.33207 5.42907 5.48027 5.57567 5.61063 5.73250 5.77012 5.95314 6.11383 6.19198 6.21986 6.44689 6.58882 6.65137 6.67375 6.88874 6.93560 7.18452 7.23763 7.31028 7.55653 7.76537 7.85014 8.08310 8.19409 8.52530 8.56836 9.03191 9.63087 11.09764 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.008403 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.866988 B = 3331.408203 C = 3441.671536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.551 6.551 4 N -0.598 5.598 5 C 0.070 3.930 6 C 0.155 3.845 7 C -0.142 4.142 8 C -0.099 4.099 9 C 0.050 3.950 10 C -0.510 4.510 11 H 0.051 0.949 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.125 4.125 19 C -0.128 4.128 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 2.830 8.164 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.430 6.430 4 N -0.331 5.331 5 C -0.072 4.072 6 C 0.052 3.948 7 C -0.179 4.179 8 C -0.136 4.136 9 C 0.031 3.969 10 C -0.548 4.548 11 H 0.069 0.931 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.162 4.162 19 C -0.165 4.165 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.726 3.177 8.165 11.045 hybrid contribution -0.244 -0.582 -0.978 1.164 sum -6.969 2.595 7.187 10.342 Atomic orbital electron populations 1.21935 0.92753 1.04731 1.03890 1.20634 0.90237 0.83334 0.76105 1.90600 1.70324 1.31475 1.50568 1.47877 1.07206 1.06025 1.71988 1.22135 0.96040 0.86647 1.02397 1.21066 0.78346 0.97556 0.97813 1.22087 0.99579 1.00322 0.95952 1.21486 0.99519 0.99029 0.93615 1.18633 0.95656 0.88971 0.93605 1.21212 1.33791 0.99422 1.00365 0.93077 1.24952 0.95139 0.96942 0.96918 1.69863 1.38063 1.09109 1.36044 0.86742 0.78838 0.77750 0.85131 1.20411 1.21375 1.20411 1.22018 1.00152 1.03337 0.90720 1.21992 1.00782 0.93446 1.00305 0.89526 0.89481 0.90020 0.89888 0.92483 0.91078 0.92682 0.92468 0.89994 0.94053 0.93931 0.96054 0.93124 0.92897 0.89188 0.91428 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.22 36.00 0.33 -1.67 16 2 C 0.51 8.37 7.24 -10.99 -0.08 8.29 16 3 O -0.55 -11.01 14.53 5.56 0.08 -10.93 16 4 N -0.60 -9.73 2.30 -173.93 -0.40 -10.13 16 5 C 0.07 0.96 7.74 59.85 0.46 1.42 16 6 C 0.15 2.76 3.12 -67.93 -0.21 2.55 16 7 C -0.14 -2.81 5.09 -26.73 -0.14 -2.94 16 8 C -0.10 -2.20 4.98 -26.73 -0.13 -2.34 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 13 N -0.89 -25.05 11.33 55.43 0.63 -24.42 16 14 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.12 -2.75 4.47 -26.73 -0.12 -2.87 16 19 C -0.13 -2.33 4.90 -26.73 -0.13 -2.46 16 20 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.08 0.83 6.85 -51.93 -0.36 0.48 16 23 H 0.08 1.12 5.38 -51.93 -0.28 0.84 16 24 H 0.06 0.59 6.78 -51.93 -0.35 0.23 16 25 H 0.07 1.08 6.42 -51.93 -0.33 0.74 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.70 5.53 -51.93 -0.29 1.42 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.96 7.36 -51.93 -0.38 0.58 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 1.11 4.06 -51.93 -0.21 0.90 16 34 H 0.09 2.26 6.08 -51.93 -0.32 1.94 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.79 6.60 -51.93 -0.34 0.44 16 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -30.27 269.86 -6.60 -36.87 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.36 Total: 0.04 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.60 Total: -11.68 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.23 Total: -34.55 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.27 -6.60 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258988812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.176 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds