Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 120.00643 * 2 1 4 4 N 1.34777 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99858 * 4.38931 * 4 2 1 6 6 C 1.46499 * 120.00367 * 184.38811 * 4 2 1 7 7 C 1.53001 * 109.46984 * 307.78770 * 6 4 2 8 8 C 1.52995 * 109.46944 * 299.99702 * 7 6 4 9 9 C 1.53001 * 109.47423 * 300.00231 * 8 7 6 10 10 C 1.50695 * 109.47507 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99700 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00097 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00137 * 359.72585 * 12 10 9 14 14 Si 1.86800 * 119.99639 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47255 * 60.00353 * 14 12 10 16 16 H 1.48502 * 109.46884 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47280 * 299.99972 * 14 12 10 18 18 C 1.53001 * 109.47249 * 59.99955 * 9 8 7 19 19 C 1.53002 * 109.47347 * 187.78424 * 6 4 2 20 20 H 1.09010 * 109.47171 * 264.74921 * 1 2 3 21 21 H 1.08997 * 109.46998 * 24.74144 * 1 2 3 22 22 H 1.08991 * 109.47933 * 144.74884 * 1 2 3 23 23 H 1.09001 * 109.47231 * 204.14352 * 5 4 2 24 24 H 1.09000 * 109.46954 * 324.13850 * 5 4 2 25 25 H 1.09001 * 109.47426 * 84.14367 * 5 4 2 26 26 H 1.09004 * 109.47181 * 67.78571 * 6 4 2 27 27 H 1.09006 * 109.46661 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46921 * 59.99673 * 7 6 4 29 29 H 1.09004 * 109.47286 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47136 * 59.99998 * 8 7 6 31 31 H 1.09004 * 109.46691 * 300.00398 * 9 8 7 32 32 H 0.96993 * 119.99852 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46955 * 59.99826 * 18 9 8 34 34 H 1.09000 * 109.47079 * 180.02562 * 18 9 8 35 35 H 1.08997 * 109.47027 * 179.97438 * 19 6 4 36 36 H 1.09001 * 109.47297 * 300.00278 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4515 -2.4341 -0.0960 6 6 3.6426 -1.1691 0.0976 7 6 4.2259 -0.2435 -0.9719 8 6 3.8062 -0.7373 -2.3578 9 6 4.3297 -2.1588 -2.5729 10 6 3.9169 -2.6450 -3.9382 11 1 3.3385 -2.0043 -4.5874 12 6 4.2775 -3.9076 -4.3586 13 7 4.9864 -4.6857 -3.5701 14 14 3.7651 -4.5105 -6.0507 15 1 4.3308 -3.6117 -7.0887 16 1 4.2733 -5.8901 -6.2595 17 1 2.2833 -4.5092 -6.1489 18 6 3.7464 -3.0844 -1.5034 19 6 4.1662 -2.5906 -0.1175 20 1 -0.3634 -0.0941 1.0234 21 1 -0.3633 0.9333 -0.4301 22 1 -0.3635 -0.8391 -0.5931 23 1 2.0537 -3.2338 0.3353 24 1 0.5105 -2.3540 0.4483 25 1 1.2477 -2.6572 -1.1433 26 1 3.9416 -0.8173 1.0850 27 1 5.3136 -0.2446 -0.8993 28 1 3.8529 0.7692 -0.8186 29 1 4.2214 -0.0776 -3.1197 30 1 2.7186 -0.7359 -2.4300 31 1 5.4174 -2.1601 -2.5006 32 1 5.2397 -5.5741 -3.8657 33 1 2.6588 -3.0830 -1.5756 34 1 4.1198 -4.0970 -1.6565 35 1 5.2538 -2.5919 -0.0457 36 1 3.7506 -3.2501 0.6444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258988812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = -54.966069 kcal Electronic energy + Delta-G solvation = -16770.206150 eV Core-core repulsion = 14253.564914 eV Total energy + Delta-G solvation = -2516.641236 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46397 -38.79025 -35.96235 -34.38464 -31.74698 -31.65414 -29.70221 -27.67156 -26.22116 -23.36214 -22.69052 -21.02044 -19.54673 -18.41939 -17.53384 -17.08052 -16.68564 -16.49144 -15.57254 -14.89542 -14.66707 -14.49744 -14.12790 -13.83006 -13.49825 -13.34932 -13.15068 -12.90403 -12.82789 -12.66372 -12.52974 -12.43781 -12.06789 -11.88941 -11.59150 -11.18695 -10.87282 -10.55753 -10.38742 -10.12785 -9.42969 -8.05508 -6.19370 1.41070 1.42169 1.49739 1.74254 2.22888 2.44264 3.19968 3.72833 4.04703 4.15477 4.16648 4.37137 4.50965 4.54431 4.65559 4.68110 4.70850 4.80834 4.90462 4.95751 5.01979 5.04659 5.12285 5.20292 5.27241 5.41873 5.50641 5.59205 5.67963 5.81482 6.08366 6.27281 6.45423 6.62056 6.91483 7.31821 7.47988 8.97591 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.008403 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.866988 B = 3331.408203 C = 3441.671536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.497 3.503 3 O -0.594 6.594 4 N -0.602 5.602 5 C 0.067 3.933 6 C 0.157 3.843 7 C -0.136 4.136 8 C -0.087 4.087 9 C 0.048 3.952 10 C -0.535 4.535 11 H 0.041 0.959 12 C 0.018 3.982 13 N -0.912 5.912 14 Si 0.948 3.052 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.115 4.115 19 C -0.117 4.117 20 H 0.117 0.883 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.038 0.962 31 H -0.015 1.015 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 2.270 9.027 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.476 6.476 4 N -0.334 5.334 5 C -0.074 4.074 6 C 0.054 3.946 7 C -0.174 4.174 8 C -0.124 4.124 9 C 0.030 3.970 10 C -0.573 4.573 11 H 0.060 0.940 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.153 4.153 19 C -0.154 4.154 20 H 0.135 0.865 21 H 0.107 0.893 22 H 0.117 0.883 23 H 0.104 0.896 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.568 2.600 9.032 12.718 hybrid contribution 0.349 -0.393 -1.270 1.374 sum -8.219 2.207 7.763 11.519 Atomic orbital electron populations 1.21952 0.88627 1.05640 1.06162 1.21563 0.92264 0.82520 0.74847 1.90579 1.71609 1.32919 1.52497 1.47998 1.06512 1.07219 1.71665 1.22257 0.97773 0.85398 1.02019 1.20931 0.79835 0.96330 0.97516 1.22008 0.99706 1.00527 0.95172 1.21310 0.98868 0.97358 0.94901 1.18604 0.93519 0.91012 0.93870 1.21508 1.34261 0.99839 1.01686 0.94020 1.25638 0.95077 0.96996 1.00340 1.69993 1.38443 1.09255 1.37451 0.85782 0.78887 0.77233 0.80742 1.20494 1.20722 1.19402 1.21822 1.00572 1.00821 0.92068 1.21856 1.00521 0.94346 0.98714 0.86520 0.89281 0.88306 0.89649 0.88170 0.92763 0.91200 0.92556 0.90628 0.95635 0.94313 0.99716 0.93042 0.91712 0.92229 0.92219 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.22 71.23 0.66 -2.56 16 2 C 0.50 15.32 7.24 87.66 0.63 15.96 16 3 O -0.59 -23.23 14.53 -3.03 -0.04 -23.27 16 4 N -0.60 -18.22 2.30 -822.58 -1.89 -20.12 16 5 C 0.07 1.61 7.74 127.77 0.99 2.60 16 6 C 0.16 5.38 3.12 44.99 0.14 5.52 16 7 C -0.14 -5.43 5.09 30.59 0.16 -5.27 16 8 C -0.09 -3.94 4.98 30.59 0.15 -3.79 16 9 C 0.05 2.46 2.10 -11.54 -0.02 2.43 16 10 C -0.53 -29.93 8.56 25.60 0.22 -29.72 16 11 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 12 C 0.02 1.01 5.30 84.66 0.45 1.46 16 13 N -0.91 -51.82 11.33 21.45 0.24 -51.58 16 14 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 C -0.12 -5.08 4.47 30.60 0.14 -4.94 16 19 C -0.12 -4.12 4.90 30.60 0.15 -3.97 16 20 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.10 1.61 6.85 -2.39 -0.02 1.59 16 23 H 0.08 2.02 5.38 -2.39 -0.01 2.01 16 24 H 0.10 1.58 6.78 -2.39 -0.02 1.56 16 25 H 0.05 1.51 6.42 -2.39 -0.02 1.50 16 26 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.08 3.16 5.53 -2.39 -0.01 3.15 16 29 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 1.76 7.36 -2.39 -0.02 1.74 16 31 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.06 2.68 4.06 -2.39 -0.01 2.67 16 34 H 0.06 3.01 6.08 -2.39 -0.01 3.00 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 2.37 6.60 -2.39 -0.02 2.35 16 Total: -1.00 -66.48 269.86 5.05 -61.43 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.28 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.66 Total: -22.27 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.65 Total: -71.70 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.48 5.05 -61.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258988812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.467 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds