Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00099 * 2 1 4 4 C 1.50706 * 109.47212 * 293.95404 * 3 2 1 5 5 O 1.21435 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.41020 * 120.00137 * 179.97438 * 4 3 2 7 7 H 1.08003 * 120.00049 * 359.97438 * 6 4 3 8 8 C 1.40455 * 120.00086 * 180.02562 * 6 4 3 9 9 N 1.30522 * 120.00120 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00035 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47074 * 60.00055 * 10 8 6 12 12 H 1.48507 * 109.47133 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47236 * 299.99800 * 10 8 6 14 14 C 1.46896 * 111.00236 * 123.95512 * 2 1 3 15 15 C 1.52997 * 109.46848 * 306.04597 * 14 2 1 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 2 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47053 * 66.04311 * 14 2 1 20 20 H 1.08994 * 109.47338 * 296.04783 * 1 2 3 21 21 H 1.08998 * 109.46955 * 56.04897 * 1 2 3 22 22 H 1.09002 * 109.47088 * 176.04150 * 1 2 3 23 23 H 1.09003 * 109.46826 * 53.95172 * 3 2 1 24 24 H 1.08998 * 109.47297 * 173.95374 * 3 2 1 25 25 H 0.97005 * 120.00064 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47220 * 186.04666 * 14 2 1 27 27 H 1.08996 * 109.47853 * 300.00000 * 15 14 2 28 28 H 1.09002 * 109.47153 * 60.00028 * 15 14 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 31 31 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 35 35 H 1.08992 * 109.47399 * 300.00238 * 19 14 2 36 36 H 1.09004 * 109.46724 * 60.00724 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0047 1.4446 -2.1422 6 6 2.0357 3.3792 -1.5338 7 1 2.5976 3.9153 -0.7832 8 6 1.7011 4.0092 -2.7437 9 7 1.0207 3.3619 -3.6502 10 14 2.2287 5.7739 -3.0551 11 1 3.7099 5.8645 -3.0010 12 1 1.7545 6.2032 -4.3953 13 1 1.6404 6.6570 -2.0162 14 6 1.9955 -0.7660 1.1375 15 6 1.3858 -0.2343 2.4362 16 6 1.9336 -1.0325 3.6210 17 6 1.5692 -2.5090 3.4534 18 6 2.1789 -3.0407 2.1547 19 6 1.6314 -2.2426 0.9703 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5610 1.9273 0.8309 24 1 3.0797 1.3444 0.1082 25 1 0.7899 3.7968 -4.4859 26 1 3.0798 -0.6611 1.1755 27 1 1.6450 0.8176 2.5554 28 1 0.3015 -0.3393 2.3982 29 1 1.4989 -0.6541 4.5461 30 1 3.0179 -0.9279 3.6592 31 1 0.4849 -2.6136 3.4152 32 1 1.9599 -3.0777 4.2973 33 1 1.9197 -4.0926 2.0356 34 1 3.2632 -2.9360 2.1930 35 1 0.5472 -2.3475 0.9323 36 1 2.0659 -2.6213 0.0451 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259116800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -53.771627 kcal Electronic energy + Delta-G solvation = -16056.127955 eV Core-core repulsion = 13539.538514 eV Total energy + Delta-G solvation = -2516.589441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14506 -36.79534 -34.59430 -32.48930 -30.62971 -29.19676 -27.94281 -26.03115 -23.90743 -22.42019 -20.96463 -19.27092 -18.83303 -16.33962 -15.57587 -14.99773 -14.71041 -14.38790 -14.05826 -13.82897 -13.52624 -13.20370 -12.41831 -12.18736 -12.06388 -12.05346 -11.78790 -11.22890 -11.15494 -10.99522 -10.85707 -10.71119 -10.43867 -10.29654 -10.14388 -10.10272 -10.01656 -9.77744 -8.82432 -7.56443 -7.09537 -6.11785 -4.81861 3.10358 3.16438 3.18533 4.06959 4.32355 4.60142 4.84528 4.92846 5.14637 5.35810 5.40877 5.51528 5.61219 5.65544 5.71885 5.77390 5.90635 6.07268 6.10479 6.11553 6.24282 6.28205 6.32614 6.36046 6.48821 6.54345 6.64530 6.70308 6.84154 7.01064 7.31592 7.85268 7.97816 8.13845 8.90694 8.99553 10.43993 10.69258 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058829 B = 0.005929 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.844945 B = 4721.520943 C = 4963.227459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.515 5.515 3 C 0.016 3.984 4 C 0.368 3.632 5 O -0.525 6.525 6 C -0.541 4.541 7 H 0.066 0.934 8 C 0.085 3.915 9 N -0.743 5.743 10 Si 0.903 3.097 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.267 1.267 14 C 0.082 3.918 15 C -0.154 4.154 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.109 4.109 20 H 0.011 0.989 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.272 0.728 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -6.807 11.203 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.237 5.237 3 C -0.113 4.113 4 C 0.261 3.739 5 O -0.412 6.412 6 C -0.573 4.573 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.371 5.371 10 Si 0.728 3.272 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.191 1.191 14 C -0.027 4.027 15 C -0.193 4.193 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.147 4.147 20 H 0.029 0.971 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.122 -7.375 10.180 12.621 hybrid contribution 0.139 1.429 0.853 1.670 sum 1.261 -5.946 11.033 12.597 Atomic orbital electron populations 1.22519 0.87883 1.01060 1.01025 1.61995 1.08073 1.14286 1.39334 1.22663 0.99258 0.87846 1.01521 1.19409 0.81445 0.87701 0.85338 1.90360 1.38777 1.66415 1.45642 1.20720 1.34963 0.99639 1.02009 0.91616 1.25953 0.93142 0.99161 0.95492 1.69945 1.25756 1.36451 1.04985 0.86498 0.79919 0.82754 0.78056 1.19052 1.20396 1.19132 1.21777 0.99039 0.93621 0.88259 1.22259 1.01241 0.99745 0.96103 1.21466 1.00746 0.95130 0.97827 1.21537 1.00656 0.95993 0.97411 1.21517 1.00326 0.98911 0.94774 1.21537 1.01004 0.94327 0.97820 0.97076 0.88832 0.92951 0.94985 0.91128 0.91696 0.90908 0.92066 0.91692 0.92613 0.92208 0.92265 0.92535 0.92270 0.92155 0.92089 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.42 60.06 0.51 0.98 16 2 N -0.52 -10.81 4.45 -236.33 -1.05 -11.86 16 3 C 0.02 0.36 4.89 -4.97 -0.02 0.33 16 4 C 0.37 10.40 6.60 -33.25 -0.22 10.19 16 5 O -0.52 -16.51 12.85 5.42 0.07 -16.44 16 6 C -0.54 -15.20 9.22 -37.69 -0.35 -15.55 16 7 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 8 C 0.09 2.34 5.50 -17.27 -0.10 2.24 16 9 N -0.74 -21.73 11.72 55.57 0.65 -21.08 16 10 Si 0.90 19.73 29.56 -169.99 -5.03 14.70 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.08 1.36 2.19 -67.72 -0.15 1.21 16 15 C -0.15 -2.27 4.45 -26.73 -0.12 -2.39 16 16 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 17 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 18 C -0.12 -1.36 5.92 -26.75 -0.16 -1.52 16 19 C -0.11 -1.58 5.12 -26.75 -0.14 -1.72 16 20 H 0.01 0.21 6.21 -51.93 -0.32 -0.12 16 21 H 0.09 2.28 5.82 -51.93 -0.30 1.98 16 22 H 0.05 0.96 6.47 -51.93 -0.34 0.62 16 23 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 24 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 25 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 26 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 27 H 0.06 0.95 6.91 -51.93 -0.36 0.60 16 28 H 0.06 0.98 6.33 -51.93 -0.33 0.65 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 278.43 15.07 4.20 4.20 Total: -1.00 -31.24 278.43 -7.90 -39.15 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.68 Total: 0.50 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.06 Total: -9.18 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.40 Total: -32.93 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.07 Total: -16.44 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.24 -7.90 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259116800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.625 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds