Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00099 * 2 1 4 4 C 1.50706 * 109.47212 * 293.95404 * 3 2 1 5 5 O 1.21435 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.41020 * 120.00137 * 179.97438 * 4 3 2 7 7 H 1.08003 * 120.00049 * 359.97438 * 6 4 3 8 8 C 1.40455 * 120.00086 * 180.02562 * 6 4 3 9 9 N 1.30522 * 120.00120 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00035 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47074 * 60.00055 * 10 8 6 12 12 H 1.48507 * 109.47133 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47236 * 299.99800 * 10 8 6 14 14 C 1.46896 * 111.00236 * 123.95512 * 2 1 3 15 15 C 1.52997 * 109.46848 * 306.04597 * 14 2 1 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 2 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47053 * 66.04311 * 14 2 1 20 20 H 1.08994 * 109.47338 * 296.04783 * 1 2 3 21 21 H 1.08998 * 109.46955 * 56.04897 * 1 2 3 22 22 H 1.09002 * 109.47088 * 176.04150 * 1 2 3 23 23 H 1.09003 * 109.46826 * 53.95172 * 3 2 1 24 24 H 1.08998 * 109.47297 * 173.95374 * 3 2 1 25 25 H 0.97005 * 120.00064 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47220 * 186.04666 * 14 2 1 27 27 H 1.08996 * 109.47853 * 300.00000 * 15 14 2 28 28 H 1.09002 * 109.47153 * 60.00028 * 15 14 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 31 31 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 35 35 H 1.08992 * 109.47399 * 300.00238 * 19 14 2 36 36 H 1.09004 * 109.46724 * 60.00724 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0047 1.4446 -2.1422 6 6 2.0357 3.3792 -1.5338 7 1 2.5976 3.9153 -0.7832 8 6 1.7011 4.0092 -2.7437 9 7 1.0207 3.3619 -3.6502 10 14 2.2287 5.7739 -3.0551 11 1 3.7099 5.8645 -3.0010 12 1 1.7545 6.2032 -4.3953 13 1 1.6404 6.6570 -2.0162 14 6 1.9955 -0.7660 1.1375 15 6 1.3858 -0.2343 2.4362 16 6 1.9336 -1.0325 3.6210 17 6 1.5692 -2.5090 3.4534 18 6 2.1789 -3.0407 2.1547 19 6 1.6314 -2.2426 0.9703 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5610 1.9273 0.8309 24 1 3.0797 1.3444 0.1082 25 1 0.7899 3.7968 -4.4859 26 1 3.0798 -0.6611 1.1755 27 1 1.6450 0.8176 2.5554 28 1 0.3015 -0.3393 2.3982 29 1 1.4989 -0.6541 4.5461 30 1 3.0179 -0.9279 3.6592 31 1 0.4849 -2.6136 3.4152 32 1 1.9599 -3.0777 4.2973 33 1 1.9197 -4.0926 2.0356 34 1 3.2632 -2.9360 2.1930 35 1 0.5472 -2.3475 0.9323 36 1 2.0659 -2.6213 0.0451 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259116800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -74.098676 kcal Electronic energy + Delta-G solvation = -16057.009402 eV Core-core repulsion = 13539.538514 eV Total energy + Delta-G solvation = -2517.470888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52853 -38.68756 -36.13006 -34.61752 -31.69650 -30.71429 -29.69707 -27.93923 -25.49036 -23.51269 -22.26999 -20.97244 -20.22834 -18.38637 -17.31554 -16.63170 -16.16370 -15.78767 -15.46736 -15.13104 -14.96094 -14.81774 -14.13724 -13.93098 -13.58836 -13.21743 -13.04260 -12.95679 -12.86117 -12.52230 -12.28891 -12.14974 -12.06709 -11.96738 -11.79080 -11.36858 -11.16490 -11.00421 -10.89545 -9.48753 -8.93157 -8.19905 -7.04445 1.37879 1.38127 1.52605 2.22568 2.24468 3.12664 3.41788 3.77392 3.88427 4.09008 4.25087 4.30909 4.40484 4.45812 4.53482 4.61371 4.63963 4.68481 4.74855 4.81966 4.90925 4.96382 5.12336 5.17641 5.21878 5.24035 5.27100 5.27956 5.35433 5.48881 5.55929 5.99227 6.17801 6.43061 6.76481 6.90412 8.35465 8.57980 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058829 B = 0.005929 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.844945 B = 4721.520943 C = 4963.227459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.538 5.538 3 C 0.031 3.969 4 C 0.343 3.657 5 O -0.569 6.569 6 C -0.572 4.572 7 H 0.082 0.918 8 C 0.029 3.971 9 N -0.792 5.792 10 Si 0.992 3.008 11 H -0.254 1.254 12 H -0.270 1.270 13 H -0.254 1.254 14 C 0.081 3.919 15 C -0.149 4.149 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.106 4.106 20 H 0.025 0.975 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.280 0.720 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -6.563 13.039 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.260 5.260 3 C -0.098 4.098 4 C 0.239 3.761 5 O -0.460 6.460 6 C -0.604 4.604 7 H 0.100 0.900 8 C -0.189 4.189 9 N -0.421 5.421 10 Si 0.811 3.189 11 H -0.178 1.178 12 H -0.194 1.194 13 H -0.178 1.178 14 C -0.027 4.027 15 C -0.188 4.188 16 C -0.147 4.147 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.144 4.144 20 H 0.044 0.956 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.047 -7.144 12.050 14.158 hybrid contribution -0.154 1.301 0.277 1.339 sum 1.893 -5.844 12.327 13.773 Atomic orbital electron populations 1.22308 0.87955 1.01467 0.99619 1.61918 1.08250 1.13425 1.42412 1.22311 0.99784 0.88944 0.98744 1.20173 0.80670 0.88371 0.86846 1.90327 1.40564 1.67448 1.47637 1.21276 1.35495 1.00352 1.03231 0.89978 1.27167 0.92400 1.04728 0.94647 1.70089 1.26927 1.39246 1.05830 0.85162 0.79908 0.75441 0.78428 1.17765 1.19437 1.17805 1.21880 0.98876 0.94257 0.87683 1.22174 1.00817 0.99468 0.96310 1.21455 1.01021 0.95425 0.96836 1.21538 1.00749 0.95354 0.97676 1.21493 1.00532 0.99259 0.93660 1.21516 1.00826 0.93209 0.98823 0.95640 0.93373 0.91099 0.94073 0.90168 0.91000 0.91007 0.93284 0.92215 0.91196 0.91667 0.92254 0.90235 0.90625 0.91636 0.92441 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.44 8.42 127.69 1.07 2.52 16 2 N -0.54 -22.85 4.45 -901.63 -4.01 -26.86 16 3 C 0.03 1.44 4.89 85.56 0.42 1.85 16 4 C 0.34 20.05 6.60 26.37 0.17 20.23 16 5 O -0.57 -37.54 12.85 -3.51 -0.05 -37.58 16 6 C -0.57 -32.63 9.22 23.49 0.22 -32.42 16 7 H 0.08 4.25 7.85 -2.91 -0.02 4.22 16 8 C 0.03 1.62 5.50 85.43 0.47 2.09 16 9 N -0.79 -47.62 11.72 21.91 0.26 -47.36 16 10 Si 0.99 40.25 29.56 68.60 2.03 42.27 16 11 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 12 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 13 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 14 C 0.08 2.62 2.19 44.92 0.10 2.72 16 15 C -0.15 -4.13 4.45 30.59 0.14 -4.00 16 16 C -0.11 -2.28 5.92 30.60 0.18 -2.09 16 17 C -0.12 -2.13 5.92 30.60 0.18 -1.95 16 18 C -0.11 -2.27 5.92 30.58 0.18 -2.09 16 19 C -0.11 -2.94 5.12 30.58 0.16 -2.78 16 20 H 0.03 0.96 6.21 -2.39 -0.01 0.95 16 21 H 0.05 2.46 5.82 -2.39 -0.01 2.45 16 22 H 0.07 2.62 6.47 -2.39 -0.02 2.61 16 23 H 0.04 1.81 7.06 -2.39 -0.02 1.79 16 24 H 0.08 3.50 7.93 -2.39 -0.02 3.48 16 25 H 0.28 15.13 8.29 -92.70 -0.77 14.36 16 26 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 27 H 0.05 1.47 6.91 -2.39 -0.02 1.45 16 28 H 0.06 1.71 6.33 -2.39 -0.02 1.70 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.62 6.55 -2.39 -0.02 1.60 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -69.93 278.43 2.56 -67.37 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.05 Total: 18.09 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.29 Total: -15.93 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -3.75 Total: -74.22 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.05 Total: -37.58 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -69.93 2.56 -67.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259116800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.729 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds